mRNA_H-elongata_contig15724.3728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15724.3728.1
Unique NamemRNA_H-elongata_contig15724.3728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: D7FYW6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.750e-31
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLNM 270
            +L HT D Y+GV +D  +LP  T+ F+ VLE+SLEAWRS G+KGVWLKVPADRTELVPV+ +LGFELHHAEKAYIMLNM
Sbjct:    2 LLEHTTDIYDGVTVDGASLPATTEEFKSVLEASLEAWRSTGKKGVWLKVPADRTELVPVSIDLGFELHHAEKAYIMLNM 80
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A2G5CBR3_AQUCA (Nudix_hydro domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CBR3_AQUCA)

HSP 1 Score: 94.0 bits (232), Expect = 7.590e-22
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L  T DNY G+I+D + LP + +TF   L+SSL +W S+G+KG+WLK+P +R+ELVP+A + GF+ HHAE+ YIM+ 
Sbjct:  102 LLDATEDNYEGIIVDPERLPSNPNTFASRLQSSLASWISKGKKGIWLKLPVERSELVPIAVKEGFQYHHAEREYIMMT 179
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A2G5CBQ6_AQUCA (Nudix hydrolase domain-containing protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CBQ6_AQUCA)

HSP 1 Score: 94.0 bits (232), Expect = 2.430e-21
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L  T DNY G+I+D + LP + +TF   L+SSL +W S+G+KG+WLK+P +R+ELVP+A + GF+ HHAE+ YIM+ 
Sbjct:  102 LLDATEDNYEGIIVDPERLPSNPNTFASRLQSSLASWISKGKKGIWLKLPVERSELVPIAVKEGFQYHHAEREYIMMT 179
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: UPI00053C3C31 (nudix hydrolase 8 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3C31)

HSP 1 Score: 94.4 bits (233), Expect = 4.100e-21
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L   +D Y GV++D + LP D  TF  VL SSL  WR + RKGVWLK+P +R+ELVPVA + GFE HHAEK Y+ML 
Sbjct:   78 LLHAYDDEYGGVVVDPERLPSDPSTFVSVLRSSLSHWRRKERKGVWLKLPVERSELVPVAIKEGFEYHHAEKGYVMLT 155
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A443P9H9_9MAGN (NUDIX hydrolase domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443P9H9_9MAGN)

HSP 1 Score: 94.0 bits (232), Expect = 5.910e-21
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L    D Y GV+I+ + LP DT+TF   L++SL  WRS+G+KGVWLK+P +R+ELVPVA + GFE HHAE+ YIML 
Sbjct:   80 VLDTYEDEYEGVVINPERLPFDTNTFASSLQASLSHWRSKGKKGVWLKLPLERSELVPVAVKEGFEYHHAEREYIMLT 157
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: R0GMM3_9BRAS (Nudix hydrolase n=2 Tax=Capsella rubella TaxID=81985 RepID=R0GMM3_9BRAS)

HSP 1 Score: 94.0 bits (232), Expect = 7.540e-21
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   25 ERTMLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            ER +L  T+D Y GVI+D + LP +   F  +L +SL  WR +G+KGVWLK+P +++ELVP+A + GFE HHAEK Y+ML 
Sbjct:   93 ERLLLDATDDQYGGVIVDHRKLPSNPYAFASMLRASLTDWRRKGKKGVWLKLPVEQSELVPIAVKEGFEYHHAEKGYVMLT 173
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A2G5CBQ5_AQUCA (Nudix hydrolase domain-containing protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CBQ5_AQUCA)

HSP 1 Score: 94.0 bits (232), Expect = 9.880e-21
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L  T DNY G+I+D + LP + +TF   L+SSL +W S+G+KG+WLK+P +R+ELVP+A + GF+ HHAE+ YIM+ 
Sbjct:  102 LLDATEDNYEGIIVDPERLPSNPNTFASRLQSSLASWISKGKKGIWLKLPVERSELVPIAVKEGFQYHHAEREYIMMT 179
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A251UFB2_HELAN (Putative nudix hydrolase 6-like protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UFB2_HELAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.060e-20
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   25 ERTMLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            E+ +L   +D Y GV+++ + LP DTD F  +L SSL  WR+EG+KG+WLK+P ++ +LVP+A   GF+ HHAE+ Y+M+ 
Sbjct:   95 EKRVLDAFDDEYGGVVVNPEKLPSDTDVFVSILRSSLSLWRTEGKKGIWLKLPVEKCDLVPIAIREGFQYHHAERGYVMMT 175
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A2P6P8Q4_ROSCH (Putative hydrolase n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6P8Q4_ROSCH)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-20
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:   34 MLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLN 267
            +L   +D Y GVI+D + LPE+ D F  +L SSL  W+ EG+KG+WLK+P +R ELVPVA + GF+ HHAE+ Y+ML 
Sbjct:  109 VLDAFDDEYGGVIVDPERLPENADAFAYILHSSLSNWKMEGKKGIWLKLPVERAELVPVAVKEGFQYHHAERGYVMLT 186
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BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Match: A0A835LTW9_9MAGN (Nudix hydrolase domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LTW9_9MAGN)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-20
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   31 TMLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRSEGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLNM 270
            ++L    DNY GVI+D   LP ++  F  +L+SSL  WRS+G+KGVWLK+P +R++LVP+A + GF  HHAE+ Y+ML +
Sbjct:  100 SVLDAAEDNYEGVIVDPDRLPINSSAFASMLQSSLSHWRSKGKKGVWLKLPTERSDLVPIAVKQGFHYHHAEREYVMLTI 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15724.3728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYW6_ECTSI1.750e-3172.15Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A2G5CBR3_AQUCA7.590e-2251.28Nudix_hydro domain-containing protein n=1 Tax=Aqui... [more]
A0A2G5CBQ6_AQUCA2.430e-2151.28Nudix hydrolase domain-containing protein n=2 Tax=... [more]
UPI00053C3C314.100e-2156.41nudix hydrolase 8 n=1 Tax=Tarenaya hassleriana Tax... [more]
A0A443P9H9_9MAGN5.910e-2156.41NUDIX hydrolase domain-containing protein n=1 Tax=... [more]
R0GMM3_9BRAS7.540e-2151.85Nudix hydrolase n=2 Tax=Capsella rubella TaxID=819... [more]
A0A2G5CBQ5_AQUCA9.880e-2151.28Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A251UFB2_HELAN1.060e-2046.91Putative nudix hydrolase 6-like protein n=3 Tax=He... [more]
A0A2P6P8Q4_ROSCH1.110e-2052.56Putative hydrolase n=2 Tax=Rosoideae TaxID=171638 ... [more]
A0A835LTW9_9MAGN1.240e-2050.00Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15724contigH-elongata_contig15724:285..2409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.1e-25
Seed eggNOG ortholog2880.D7FYW6
KEGG rclassRC00005
KEGG koko:K13648
KEGG ReactionR05191
KEGG Pathwayko00520,map00520
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004551,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0009605,GO:0009607,GO:0009611,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0023051,GO:0023056,GO:0035529,GO:0036094,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0047631,GO:0048037,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051287,GO:0051704,GO:0051707,GO:0065007,GO:0071944,GO:0080151,GO:0097159,GO:1901265,GO:1901363,GO:2000031,GO:2001023,GO:2001025,GO:2001038,GO:2001040
EggNOG free text desc.8-hydroxy-dADP phosphatase activity
EggNOG OGsKOG0648@1,KOG0648@2759
EC2.4.1.43
COG Functional cat.L
CAZyGT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.4261274-CDS-H-elongata_contig15724:284..3771622929928.4261274-CDS-H-elongata_contig15724:284..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15724 285..377 -
1691679211.526858-CDS-H-elongata_contig15724:284..3771691679211.526858-CDS-H-elongata_contig15724:284..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15724 285..377 -
1622929928.438929-CDS-H-elongata_contig15724:2232..24091622929928.438929-CDS-H-elongata_contig15724:2232..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15724 2233..2409 -
1691679211.5388858-CDS-H-elongata_contig15724:2232..24091691679211.5388858-CDS-H-elongata_contig15724:2232..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15724 2233..2409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15724.3728.1prot_H-elongata_contig15724.3728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15724 285..2409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15724.3728.1

>prot_H-elongata_contig15724.3728.1 ID=prot_H-elongata_contig15724.3728.1|Name=mRNA_H-elongata_contig15724.3728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
SPRQERRQERTMLGHTNDNYNGVIIDEKALPEDTDTFEDVLESSLEAWRS
EGRKGVWLKVPADRTELVPVARELGFELHHAEKAYIMLNM
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mRNA from alignment at H-elongata_contig15724:285..2409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15724.3728.1 ID=mRNA_H-elongata_contig15724.3728.1|Name=mRNA_H-elongata_contig15724.3728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2125bp|location=Sequence derived from alignment at H-elongata_contig15724:285..2409- (Himanthalia elongata Himel1 dioecious)
TCCCCGAGGCAGGAGAGGAGGCAGGAGAGGACGATGCTGGGCCACACGAA
CGACAACTACAACGGAGTGATCATCGACGAAAAAGCTCTCCCGGAGGACA
CCGACACCTTCGAGGACGTGCTGGAGAGCTCCCTCGAGGCCTGGCGATCG
GAGGGTCGGAAGGGCGTGTGGCTCAAGGTGAAAATAATGGGAAGGGAGGA
GAGGGGAGGGTGGGGTGTCCTTCCGGAGTGGTAACGTGGTCTAGTATGGT
CATCCCCCCGTCCATACCTCTTATTTATTATATCGAAAGGGTGTCGAAAA
GGGAATGTTGTTTGCAGCAGGATGTCGCGGTGATGGTGTGGAGAGTGCAT
CTCGATTGTCAAAGCGTTAGTTCGTGCGAGCGTAAACTCGACACCGTCGT
GCCAAATCGAGGCCATAAACTAACAATGCGAAGAATGATCCATCCCTTCA
CCATTCCCTTATCGAGGCCATAAACTAACAAGGCAAAGAATGACCCCTTC
CTCCACCATTCCTTTGCCATTAGGTCACCGTTGGTTCACCGTTGGTTCAC
CGTTGGTTCATCATGGTTGGCCGGGTTTATTTCTTTTTAGGTCATGACAC
TAACACCATGACTGTAATACTAAAATACTATTAATACGAACTAGTGAAGT
GTAATACTAAAATACTATTAATACAATATCAAGTGATATCTGGCCTGAAT
ATTTTGCCCCAAAACATTCTCATATCCCGTTATCGCGAGGCACTCAATGG
TCCGCAGGTCTCCACGACGAAAACCCAGATTTTGATCGGTGGAGGTTGGC
TTTGGGTTGGTGGAAATTGTCACTGGAATCACCGTGCCCTTAATACTTAA
TATAGACTAGACTAGACTAGTGTGTATAAATTTTCCCCACCAAACGGCAA
TCCACGCCCTTACTTGACCTTTACTTGACCTACTATTTTAAATGCGTGCT
CGTGTAGCGTATTCTAATTCGACGGATTCGAGGTGATCCGCGCTGCCCTT
CGCTAAAAACGTGCCTTGATCTTAAAATATTTGGATCTGTCTCGAGTAGA
TTACTTGTAGTTTGTATCCCTTTTTGATCCCTTTTTGAAAACAAGAGAAG
GTCGCTATTTGGACGACTTGGTTGTGAGTGTATAGTGTATACCGTGCCCG
ATTGATTGATTTATTATCACTTTATGCGTCTTTTCTTTGCACTATAGCAT
AGTATAGTATAGTATAGTGTAGTATAGTATAGTATAGCACAGTATAGTAT
ATAAGCTTTGGTTTTGGCGTCTCCACATGAAGAATTACGTTTAGTGTACG
GGATAAATAACATTATGGGATAGATACAGATAGATACAGATATATCCATG
ACATTATTCCGTTTACACGATTAATCACGTGTGACGATTTTGTACTCAAA
GGTTGTAGTGTACACATTCGAACCTGACCATGGTTGGTCCCCTGGAATGC
ATCCCTTACGGCGCTAAGAAGGCTATTATAGTGTGGATGGTCGGAGGGTT
GGAATGCTTTCATGATTTAAAAAAATAAAAATACAACAGACTTATCAATC
AAATACGAGAGTGCCACTGGATTTGAAAGCTTAGATAGACACTGCTGTGC
TGAGACATTTTCCTTTTGGCGGAAACTTTCTTCTTTTCGAGGAGGAAGCT
TCGGCGAAGTTTCCTCATGGATGGGAAGGCTGCACAGGTGGCACGTGTTT
TCCGAAAAAAAATAGGAACAACTTTGGTGTTCCTTCCTATTGTATGGTTG
CATATCGCACATTGTATTGTGTATTGTAGTGTTACGATGATGAGAGCAGG
AGATAGATGGCCCAAAAGCGTTTTGCCTCGAGAGAAAACTACGCCAGTGC
TGTGTTCTCGTAGAGCTATTAGAAGTCTAGTAGCCTCTCGGCAGACATAA
AAAATACTAAAAGCATACTTGTCTTCGTATCAAACAGATCACACGCCCGC
GCGCGCTTCCTCATAAACACGCGCGCACGCACAAACGCCGCGAGAATGGT
GCGTATTGTTTCCTTTTCGTCTCCGTTTCCAGGTTCCGGCGGACAGGACG
GAGCTGGTGCCAGTGGCGCGAGAGCTGGGGTTCGAACTCCACCACGCCGA
GAAGGCGTACATCATGCTTAATATG
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Coding sequence (CDS) from alignment at H-elongata_contig15724:285..2409-

>mRNA_H-elongata_contig15724.3728.1 ID=mRNA_H-elongata_contig15724.3728.1|Name=mRNA_H-elongata_contig15724.3728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig15724:285..2409- (Himanthalia elongata Himel1 dioecious)
TCCCCGAGGCAGGAGAGGAGGCAGGAGAGGACGATGCTGGGCCACACGAA
CGACAACTACAACGGAGTGATCATCGACGAAAAAGCTCTCCCGGAGGACA
CCGACACCTTCGAGGACGTGCTGGAGAGCTCCCTCGAGGCCTGGCGATCG
GAGGGTCGGAAGGGCGTGTGGCTCAAGTCCCCGAGGCAGGAGAGGAGGCA
GGAGAGGACGATGCTGGGCCACACGAACGACAACTACAACGGAGTGATCA
TCGACGAAAAAGCTCTCCCGGAGGACACCGACACCTTCGAGGACGTGCTG
GAGAGCTCCCTCGAGGCCTGGCGATCGGAGGGTCGGAAGGGCGTGTGGCT
CAAGGTTCCGGCGGACAGGACGGAGCTGGTGCCAGTGGCGCGAGAGCTGG
GGTTCGAACTCCACCACGCCGAGAAGGCGTACATCATGCTTAATATGGTT
CCGGCGGACAGGACGGAGCTGGTGCCAGTGGCGCGAGAGCTGGGGTTCGA
ACTCCACCACGCCGAGAAGGCGTACATCATGCTTAATATG
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