mRNA_H-elongata_contig157231.3727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157231.3727.1
Unique NamemRNA_H-elongata_contig157231.3727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: D7FQD9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD9_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.720e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTK 120
            QVKHM LE+RVKLA+LIVAL EDD++ VV AY +MGI TK
Sbjct:  407 QVKHMALEERVKLAKLIVALDEDDREGVVRAYIDMGIRTK 446
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: I2CQV3_NANGC (ABC1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQV3_NANGC)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-6
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTKN 123
            QVKH+ LEQR++LARLIVA+A+ D+D+VV  Y  MG  T++
Sbjct:  169 QVKHITLEQRLQLARLIVAVAKKDKDKVVACYRAMGFRTRH 209
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: A0A5J4YKJ6_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKJ6_PORPP)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTE-MGIVTKN 123
            QVKHM LE+R+K A+LIVALA DD+  +V   TE MGI TK+
Sbjct:  513 QVKHMSLEERIKYAKLIVALARDDKVEIVRVATEEMGIKTKH 554
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: F2UDP2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UDP2_SALR5)

HSP 1 Score: 49.7 bits (117), Expect = 9.330e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTKN 123
            QVK + +EQR++LARLIVALA+ D D VV  +  MG  +KN
Sbjct:  395 QVKRLTVEQRIELARLIVALADGDMDEVVRVHAHMGFRSKN 435
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: A0A4D9CWB2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.240e-5
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTK 120
            +VKH+ LEQR++LARLIVA+A+ D+++VV  Y  MG  T+
Sbjct:  114 EVKHITLEQRLQLARLIVAVAKKDKEKVVACYRAMGFRTR 153
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BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Match: A0A813QB95_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813QB95_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 4.480e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 QVKHMGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTK 120
            QV+ + LEQR+KLA+LIV LAE  +D +V+ Y++MG  TK
Sbjct:  360 QVQELTLEQRLKLAKLIVLLAEGTRDEIVQHYSQMGAKTK 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157231.3727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQD9_ECTSI2.720e-972.50Protein kinase domain-containing protein n=1 Tax=E... [more]
I2CQV3_NANGC1.530e-658.54ABC1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A5J4YKJ6_PORPP3.640e-661.90Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
F2UDP2_SALR59.330e-656.10Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A4D9CWB2_9STRA2.240e-555.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A813QB95_9BILA4.480e-555.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157231contigH-elongata_contig157231:165..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.3840954-CDS-H-elongata_contig157231:164..2751622929928.3840954-CDS-H-elongata_contig157231:164..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157231 165..275 -
1691679211.5044832-CDS-H-elongata_contig157231:164..2751691679211.5044832-CDS-H-elongata_contig157231:164..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157231 165..275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.393131-UTR-H-elongata_contig157231:275..2871622929928.393131-UTR-H-elongata_contig157231:275..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157231 276..287 -
1691679211.516406-UTR-H-elongata_contig157231:275..2871691679211.516406-UTR-H-elongata_contig157231:275..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157231 276..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157231.3727.1prot_H-elongata_contig157231.3727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157231 165..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157231.3727.1

>prot_H-elongata_contig157231.3727.1 ID=prot_H-elongata_contig157231.3727.1|Name=mRNA_H-elongata_contig157231.3727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MGLEQRVKLARLIVALAEDDQDRVVEAYTEMGIVTKN
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mRNA from alignment at H-elongata_contig157231:165..287-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157231.3727.1 ID=mRNA_H-elongata_contig157231.3727.1|Name=mRNA_H-elongata_contig157231.3727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig157231:165..287- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAGCATATGGGTCTGGAGCAGCGGGTGAAACTTGCCCGATTGAT
TGTGGCGCTGGCGGAGGACGACCAAGACAGAGTGGTGGAAGCCTATACGG
AGATGGGCATCGTCACCAAAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig157231:165..287-

>mRNA_H-elongata_contig157231.3727.1 ID=mRNA_H-elongata_contig157231.3727.1|Name=mRNA_H-elongata_contig157231.3727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig157231:165..287- (Himanthalia elongata Himel1 dioecious)
ATGGGTCTGGAGCAGCGGGTGAAACTTGCCCGATTGATTGTGGCGCTGGC
GGAGGACGACCAAGACAGAGTGGTGGAAGCCTATACGGAGATGGGCATCG
TCACCAAAAACATGGGTCTGGAGCAGCGGGTGAAACTTGCCCGATTGATT
GTGGCGCTGGCGGAGGACGACCAAGACAGAGTGGTGGAAGCCTATACGGA
GATGGGCATCGTCACCAAAAAC
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