mRNA_H-elongata_contig157223.3726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157223.3726.1
Unique NamemRNA_H-elongata_contig157223.3726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.340e-51
Identity = 104/277 (37.55%), Postives = 149/277 (53.79%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  E +   T +  G KL G    C  CS S   R  + + T+ R++++ GR+F DL G     S+ G  + ++  DDFT    + FL++KSDA +A R  +    A  G+   ++++R+D GG++ G  F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:   36 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.200e-49
Identity = 105/276 (38.04%), Postives = 148/276 (53.62%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK-IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  E +   T +  G KL G    C  CS S   R  + + T+ R++++ GR+F+DL G     S+ G  + M+  DDFT    + FLK++SDA  A R  +    A      ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:  256 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 529          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.310e-49
Identity = 104/277 (37.55%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  + +   T +  G +L G    C  CS +   +  +++ T++R++++ GR+F+DL G     S+ G  + M+  DDFT    + FLKHKSDA  A R  +    A +G+   ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:  668 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 941          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.330e-49
Identity = 104/277 (37.55%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  + +   T +  G +L G    C  CS +   +  +++ T++R++++ GR+F+DL G     S+ G  + M+  DDFT    + FLKHKSDA  A R  +    A +G+   ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:  375 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 648          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.300e-48
Identity = 105/277 (37.91%), Postives = 150/277 (54.15%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  E +   T +  G KL G    C  CS S   R  + + T+ R++++ GR+F+DL G     S+ G  + M+  DDFT    + FL++KSDA +A R  +    A  G+   ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+      PYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:  134 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 407          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.700e-48
Identity = 106/277 (38.27%), Postives = 150/277 (54.15%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  E +   T +  G KL G    C  CS S   R  +   T+ R++++ GR+F+DL G     S+ G  + M+  DDFT    + FL++KSDA +A R  +    A  G+   ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  P     +PF    Y R  +P  KL P+G SC  +G + D PR+  RV
Sbjct:  189 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 462          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.360e-48
Identity = 102/277 (36.82%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    4 KFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLK--IDVIRTDGGGEWHG-QFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            +FH +  H  E +   T +  G++L+G    C  CS S  ++  ++  T+ R++++ GR+F+DL G     S+ G  + M+  DDFT    + FLK KSDA +A R  +    A +G+   ++++R+D GGE+ G +F S  +EL IK+E TP Y+PQYNGV ER LGL+    +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+W+G   +    +PF    Y R  +P  KL P+G +C  +G + D PR+  RV
Sbjct:  574 EFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV 847          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 9.120e-43
Identity = 105/267 (39.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query:   10 HQVLGHPAEQITSNTVRMAGVKLSG-IWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPE-GLKIDVIRTDGGGEWHGQFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVALLRGVMEGKIDL-----LWAEAMAYACDMWNRCTFSSLDSG-TSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCP 786
            H   GH  E++   T +  GV+L+G    PC+ CS S      +SKST+ RA  +  RLF++L G     S+ GN + ++  DD T +  V FLKHKSDA  A    + +Y A     ++ V RTDGGGE+ GQF       GIK+E TPP TP+YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N CT ++ + G  SP EL++G  P   + HPF     + +S+   +  PR      LGL    P
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.170e-38
Identity = 97/276 (35.14%), Postives = 139/276 (50.36%), Query Frame = 1
Query:    7 FHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLKIDV--IRTDGGGEW-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            FH   GH  E +   T +  G  L G  R C+ CS +      +   T  RA ++  R+F+DLSG     SL G  + ++  DD+T +  V FLKHKSDA  A    + E  A  G   DV  +R+D GGE+  G+F     +  IK+E TP ++P+YNGV ERALGL++D  +A       L  G        LWAEA+A++C+  N  + +S     SPYE+W+G  P     +PF     + + K  HK  P+   C  LG   +  R+  R+
Sbjct:  513 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRA-NGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPN--YPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRI 784          
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.180e-38
Identity = 97/276 (35.14%), Postives = 139/276 (50.36%), Query Frame = 1
Query:    7 FHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKSTENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKSDATNALRDIINEYFAPEGLKIDV--IRTDGGGEW-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVMEGKIDLLWAEAMAYACDMWNRCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGASCIMLGLTPDCPRETFRV 804
            FH   GH  E +   T +  G  L G  R C+ CS +      +   T  RA ++  R+F+DLSG     SL G  + ++  DD+T +  V FLKHKSDA  A    + E  A  G   DV  +R+D GGE+  G+F     +  IK+E TP ++P+YNGV ERALGL++D  +A       L  G        LWAEA+A++C+  N  + +S     SPYE+W+G  P     +PF     + + K  HK  P+   C  LG   +  R+  R+
Sbjct:  526 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRA-NGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPN--YPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRI 797          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157223.3726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE2.340e-5137.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE2.200e-4938.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JBA7_9PHAE2.310e-4937.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.330e-4937.55Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE1.300e-4837.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE2.700e-4838.27Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K2M6_9PHAE3.360e-4836.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE9.120e-4339.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE2.170e-3835.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.180e-3835.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157223contigH-elongata_contig157223:131..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score120.9
Seed ortholog evalue8.9e-25
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size804
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.3521576-CDS-H-elongata_contig157223:130..9341622929928.3521576-CDS-H-elongata_contig157223:130..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157223 131..934 +
1691679211.4885793-CDS-H-elongata_contig157223:130..9341691679211.4885793-CDS-H-elongata_contig157223:130..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157223 131..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157223.3726.1prot_H-elongata_contig157223.3726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157223 131..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157223.3726.1

>prot_H-elongata_contig157223.3726.1 ID=prot_H-elongata_contig157223.3726.1|Name=mRNA_H-elongata_contig157223.3726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MKFHQVLGHPAEQITSNTVRMAGVKLSGIWRPCVHCSESSVWRFAVSKST
ENRAERRAGRLFIDLSGPFHETSLEGNRFVMLCIDDFTCFKMVRFLKHKS
DATNALRDIINEYFAPEGLKIDVIRTDGGGEWHGQFLSFLSELGIKREST
PPYTPQYNGVVERALGLLRDKTVALLRGVMEGKIDLLWAEAMAYACDMWN
RCTFSSLDSGTSPYELWYGRRPTFDNIHPFGTMGYLRRSKPGHKLAPRGA
SCIMLGLTPDCPRETFRV
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mRNA from alignment at H-elongata_contig157223:131..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157223.3726.1 ID=mRNA_H-elongata_contig157223.3726.1|Name=mRNA_H-elongata_contig157223.3726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig157223:131..934+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACAAGCAA CACGGTTCGTATGGCGGGCGTGAAACTAAGCGGAATTTGGCGACCATGCG TACACTGCTCCGAATCTAGTGTGTGGCGATTCGCCGTGTCTAAATCCACG GAGAATCGGGCTGAAAGGCGCGCGGGACGGCTGTTTATTGATCTTTCAGG CCCCTTTCACGAGACGTCTCTCGAAGGAAATAGATTCGTCATGCTGTGCA TTGACGACTTCACCTGCTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGC GACGCCACGAATGCGTTAAGGGACATAATTAACGAGTACTTCGCGCCCGA GGGCCTCAAGATCGACGTCATCCGCACGGACGGTGGGGGAGAATGGCACG GCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGGATCAAGCGCGAGTCCACA CCCCCATATACCCCTCAATACAATGGCGTCGTGGAGCGCGCTCTGGGGCT ACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGA TCGACCTTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAAC CGATGTACTTTCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTG GTACGGCCGACGTCCGACCTTCGACAATATCCACCCGTTCGGGACCATGG GATATCTACGACGGTCCAAGCCGGGGCACAAACTAGCCCCCCGCGGGGCG AGCTGCATCATGCTCGGGCTGACCCCCGACTGCCCGCGGGAAACTTTCCG GGTG
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Coding sequence (CDS) from alignment at H-elongata_contig157223:131..934+

>mRNA_H-elongata_contig157223.3726.1 ID=mRNA_H-elongata_contig157223.3726.1|Name=mRNA_H-elongata_contig157223.3726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig157223:131..934+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACAAGCAA
CACGGTTCGTATGGCGGGCGTGAAACTAAGCGGAATTTGGCGACCATGCG
TACACTGCTCCGAATCTAGTGTGTGGCGATTCGCCGTGTCTAAATCCACG
GAGAATCGGGCTGAAAGGCGCGCGGGACGGCTGTTTATTGATCTTTCAGG
CCCCTTTCACGAGACGTCTCTCGAAGGAAATAGATTCGTCATGCTGTGCA
TTGACGACTTCACCTGCTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGC
GACGCCACGAATGCGTTAAGGGACATAATTAACGAGTACTTCGCGCCCGA
GGGCCTCAAGATCGACGTCATCCGCACGGACGGTGGGGGAGAATGGCACG
GCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGGATCAAGCGCGAGTCCACA
CCCCCATATACCCCTCAATACAATGGCGTCGTGGAGCGCGCTCTGGGGCT
ACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGA
TCGACCTTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAAC
CGATGTACTTTCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTG
GTACGGCCGACGTCCGACCTTCGACAATATCCACCCGTTCGGGACCATGG
GATATCTACGACGGTCCAAGCCGGGGCACAAACTAGCCCCCCGCGGGGCG
AGCTGCATCATGCTCGGGCTGACCCCCGACTGCCCGCGGGAAACTTTCCG
GGTGATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACAA
GCAACACGGTTCGTATGGCGGGCGTGAAACTAAGCGGAATTTGGCGACCA
TGCGTACACTGCTCCGAATCTAGTGTGTGGCGATTCGCCGTGTCTAAATC
CACGGAGAATCGGGCTGAAAGGCGCGCGGGACGGCTGTTTATTGATCTTT
CAGGCCCCTTTCACGAGACGTCTCTCGAAGGAAATAGATTCGTCATGCTG
TGCATTGACGACTTCACCTGCTTCAAAATGGTCCGTTTCCTCAAGCACAA
GAGCGACGCCACGAATGCGTTAAGGGACATAATTAACGAGTACTTCGCGC
CCGAGGGCCTCAAGATCGACGTCATCCGCACGGACGGTGGGGGAGAATGG
CACGGCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGGATCAAGCGCGAGTC
CACACCCCCATATACCCCTCAATACAATGGCGTCGTGGAGCGCGCTCTGG
GGCTACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGT
AAGATCGACCTTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTG
GAACCGATGTACTTTCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGC
TTTGGTACGGCCGACGTCCGACCTTCGACAATATCCACCCGTTCGGGACC
ATGGGATATCTACGACGGTCCAAGCCGGGGCACAAACTAGCCCCCCGCGG
GGCGAGCTGCATCATGCTCGGGCTGACCCCCGACTGCCCGCGGGAAACTT
TCCGGGTG
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