mRNA_H-elongata_contig157203.3725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157203.3725.1
Unique NamemRNA_H-elongata_contig157203.3725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-22
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHH+N+KVHFIVM
Sbjct:  861 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHLNKKVHFIVM 907
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-22
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHH+N+KVHFIVM
Sbjct:  586 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHLNKKVHFIVM 632
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A836CAN4_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.430e-19
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            ET+FLRRILPHYYEH++ HP+TFLVRF GMYRVKMHHINRKVHF+VM
Sbjct:  510 ETRFLRRILPHYYEHIRRHPDTFLVRFCGMYRVKMHHINRKVHFMVM 556
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A2D4CBN1_PYTIN (Phosphatidylinositol-4-phosphate 5 kinase-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBN1_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 2.350e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E+KFLRRILPHYY+ V  +P T + RFYGM+RVKMHHI RK+HFI+M
Sbjct:  206 ESKFLRRILPHYYKFVMENPNTLITRFYGMHRVKMHHIRRKMHFIIM 252
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A7R9YC01_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC01_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.360e-14
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E KFLRRILPHYY H++ +P++ + RFYGM+RVKM+H+ RKVHF+VM
Sbjct:  217 ENKFLRRILPHYYAHLRSNPDSLMTRFYGMHRVKMYHLRRKVHFVVM 263
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A225VVS3_9STRA (Phosphatidylinositol-4-phosphate-5-kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VVS3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.360e-14
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E+KFLRRILPHYY+ V  +P+T + RFYGM+RVKMHH+ RK+HF++M
Sbjct:  242 ESKFLRRILPHYYKFVMENPDTLITRFYGMHRVKMHHLRRKMHFVIM 288
[Close]
BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A4D9DCS9_9STRA (PIPK domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCS9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.690e-14
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E KFLR+ILPHYY++V ++P T L RFYGM+RVKM H+ RKVHF++M
Sbjct:  329 ENKFLRKILPHYYQYVSLNPNTLLTRFYGMHRVKMRHLKRKVHFVIM 375
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A5D6Y3G0_9STRA (PIPK domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3G0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.690e-14
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E+KFLRRILPHYY+ V  +P T + RFYGM+RVKMHH+ RK+HFI+M
Sbjct:  283 ESKFLRRILPHYYKFVMENPNTLITRFYGMHRVKMHHLRRKMHFIIM 329
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BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: A0A3F2RGW4_9STRA (Inorganic diphosphatase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGW4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E+KFLRRILPHYY+ V  +P T + RFYGM+RVKMHH+ RK+HF++M
Sbjct:  749 ESKFLRRILPHYYKFVMENPNTLITRFYGMHRVKMHHLRRKMHFVIM 795
[Close]
BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Match: H3GYT1_PHYRM (PIPK domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GYT1_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM 141
            E+KFLRRILPHYY+ V  +P T + RFYGM+RVKMHH+ RK+HF++M
Sbjct:  268 ESKFLRRILPHYYKFVMENPNTLITRFYGMHRVKMHHLRRKMHFVIM 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157203.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUU1_9PHAE1.380e-2295.74PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC9_ECTSI1.380e-2295.74PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CAN4_9STRA2.430e-1985.11PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2D4CBN1_PYTIN2.350e-1470.21Phosphatidylinositol-4-phosphate 5 kinase-like pro... [more]
A0A7R9YC01_9STRA6.360e-1465.96Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225VVS3_9STRA6.360e-1465.96Phosphatidylinositol-4-phosphate-5-kinase n=1 Tax=... [more]
A0A4D9DCS9_9STRA8.690e-1465.96PIPK domain-containing protein n=1 Tax=Nannochloro... [more]
A0A5D6Y3G0_9STRA8.690e-1468.09PIPK domain-containing protein n=1 Tax=Pythium bra... [more]
A0A3F2RGW4_9STRA1.190e-1365.96Inorganic diphosphatase n=3 Tax=Phytophthora kerno... [more]
H3GYT1_PHYRM1.190e-1365.96PIPK domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157203contigH-elongata_contig157203:176..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D8LKC9
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.3188367-CDS-H-elongata_contig157203:175..3161622929928.3188367-CDS-H-elongata_contig157203:175..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157203 176..316 +
1691679211.4756496-CDS-H-elongata_contig157203:175..3161691679211.4756496-CDS-H-elongata_contig157203:175..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157203 176..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157203.3725.1prot_H-elongata_contig157203.3725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157203 176..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157203.3725.1

>prot_H-elongata_contig157203.3725.1 ID=prot_H-elongata_contig157203.3725.1|Name=mRNA_H-elongata_contig157203.3725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
ETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHINRKVHFIVM
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mRNA from alignment at H-elongata_contig157203:176..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157203.3725.1 ID=mRNA_H-elongata_contig157203.3725.1|Name=mRNA_H-elongata_contig157203.3725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig157203:176..316+ (Himanthalia elongata Himel1 dioecious)
GAGACGAAGTTTCTCCGGAGAATCTTGCCGCACTACTATGAGCACGTGAA
GGTTCACCCGGAAACGTTCTTGGTCCGGTTCTACGGCATGTACCGCGTTA
AGATGCATCACATAAACCGAAAGGTTCACTTCATCGTCATG
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Coding sequence (CDS) from alignment at H-elongata_contig157203:176..316+

>mRNA_H-elongata_contig157203.3725.1 ID=mRNA_H-elongata_contig157203.3725.1|Name=mRNA_H-elongata_contig157203.3725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig157203:176..316+ (Himanthalia elongata Himel1 dioecious)
GAGACGAAGTTTCTCCGGAGAATCTTGCCGCACTACTATGAGCACGTGAA
GGTTCACCCGGAAACGTTCTTGGTCCGGTTCTACGGCATGTACCGCGTTA
AGATGCATCACATAAACCGAAAGGTTCACTTCATCGTCATGGAGACGAAG
TTTCTCCGGAGAATCTTGCCGCACTACTATGAGCACGTGAAGGTTCACCC
GGAAACGTTCTTGGTCCGGTTCTACGGCATGTACCGCGTTAAGATGCATC
ACATAAACCGAAAGGTTCACTTCATCGTCATG
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