mRNA_H-elongata_contig15719.3721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15719.3721.1
Unique NamemRNA_H-elongata_contig15719.3721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15719.3721.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.540e-29
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 RYLEEKWRESGKGVIKLQGESFPLVCPKAPSQMNGCDCGVYVLRYAKEICQQWPRVTSAHVEDGLARYFTPELFGPADIVEERRQLRELLGECK 282
            RYL+ KW+E+G+G +    + FPLV P+ P+Q+NGCDCGVYVLRYAKEICQQWP VT+A V++ L+ +F PELF P+DI EERR LRELL  CK
Sbjct:  501 RYLQAKWKETGRGEMLFDQDVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTAAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCK 594
[Close]
BLAST of mRNA_H-elongata_contig15719.3721.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.010e-28
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 RYLEEKWRESGKGVIKLQGESFPLVCPKAPSQMNGCDCGVYVLRYAKEICQQWPRVTSAHVEDGLARYFTPELFGPADIVEERRQLRELLGECK 282
            RYL+ KW+E+G+G +      FPLV P+ P+Q+NGCDCGVYVLRYAKEICQQWP VT A V++ L+ +F PELF P+DI EERR LRELL  CK
Sbjct:  803 RYLQAKWKETGRGEMLFDQHVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTVAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCK 896
[Close]
BLAST of mRNA_H-elongata_contig15719.3721.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.070e-23
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    4 YLEEKWRESGKGVIKLQGESFPLVCPKAPSQMNGCDCGVYVLRYAKEICQQWPRVTSAHVEDGLARYFTPELFGPADIVEERRQLRELL 270
            YL+E W  + +G   +  +  PLV  ++P Q NGCDCG+ VLR AK+I Q+WP  T A V+DG+ ++FTPELF P+DI  ERR LR+LL
Sbjct:   22 YLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAKDILQEWPIATQAEVDDGMQKHFTPELFSPSDISNERRMLRQLL 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15719.3721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDN6_ECTSI4.540e-2963.83ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE2.010e-2863.83ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FTK7_ECTSI2.070e-2351.69ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15719contigH-elongata_contig15719:395..7446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size3912
Cds size2364
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15719.3721.1prot_H-elongata_contig15719.3721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15719 2192..6343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.0119922-UTR-H-elongata_contig15719:394..7881622929928.0119922-UTR-H-elongata_contig15719:394..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 395..788 -
1691679211.345236-UTR-H-elongata_contig15719:394..7881691679211.345236-UTR-H-elongata_contig15719:394..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 395..788 -
1622929928.0284674-UTR-H-elongata_contig15719:798..14131622929928.0284674-UTR-H-elongata_contig15719:798..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 799..1413 -
1691679211.3569677-UTR-H-elongata_contig15719:798..14131691679211.3569677-UTR-H-elongata_contig15719:798..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 799..1413 -
1622929928.049471-UTR-H-elongata_contig15719:1988..21911622929928.049471-UTR-H-elongata_contig15719:1988..2191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 1989..2191 -
1691679211.37007-UTR-H-elongata_contig15719:1988..21911691679211.37007-UTR-H-elongata_contig15719:1988..2191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 1989..2191 -
1622929928.0969508-UTR-H-elongata_contig15719:6343..63921622929928.0969508-UTR-H-elongata_contig15719:6343..6392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 6344..6392 -
1691679211.3993413-UTR-H-elongata_contig15719:6343..63921691679211.3993413-UTR-H-elongata_contig15719:6343..6392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 6344..6392 -
1622929928.1166317-UTR-H-elongata_contig15719:6817..69631622929928.1166317-UTR-H-elongata_contig15719:6817..6963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 6818..6963 -
1691679211.4090338-UTR-H-elongata_contig15719:6817..69631691679211.4090338-UTR-H-elongata_contig15719:6817..6963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 6818..6963 -
1622929928.14322-UTR-H-elongata_contig15719:7305..74461622929928.14322-UTR-H-elongata_contig15719:7305..7446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 7306..7446 -
1691679211.4166038-UTR-H-elongata_contig15719:7305..74461691679211.4166038-UTR-H-elongata_contig15719:7305..7446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15719 7306..7446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.0666254-CDS-H-elongata_contig15719:2191..26551622929928.0666254-CDS-H-elongata_contig15719:2191..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15719 2192..2655 -
1691679211.378932-CDS-H-elongata_contig15719:2191..26551691679211.378932-CDS-H-elongata_contig15719:2191..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15719 2192..2655 -
1622929928.0837872-CDS-H-elongata_contig15719:4443..63431622929928.0837872-CDS-H-elongata_contig15719:4443..6343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15719 4444..6343 -
1691679211.3905365-CDS-H-elongata_contig15719:4443..63431691679211.3905365-CDS-H-elongata_contig15719:4443..6343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15719 4444..6343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15719.3721.1

>prot_H-elongata_contig15719.3721.1 ID=prot_H-elongata_contig15719.3721.1|Name=mRNA_H-elongata_contig15719.3721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=788bp
MDCKRTPCAAVGMAPATTTAAAAPAPSLEPDPGIPTHDAFATIEPTTNAA
TTPVSDPAPGPALAPATTTACAFPSVDKGRERLESVCAATAMTALSDVRT
SGEASTCGAESFGIPSPSHCASSEIEASDAKIEESKSGTNDEDYNNHVSA
ARTASGGRRKLLEFQGPSEGGMEGDRGGDVDGDGAEGAAKKEDAAFVMAP
VTPLRDPSGVEMEKIVMRGASGRAVNSAKAARRRKSLAGNKGHECCAAVT
TTVGKCSSVADTDQAEEAQQELDIDGSSQGFGGIDVEDGGTGRDESSCIP
VRRRKKLQSESTKGCPLTTPALASVGEKISGKDGLRASHEVGDLKREDAE
RQSADAGCLSFQQPGDRGFGGEVVPSTTGDYTATIHSALVGVFGPEGSGD
DGQRARNKVGPPDELTKKRSDEVGCFSAQRPRGKGSGGKAIPSLAGAGAT
SDHFSCQSAVGQSAQSKSSIRRRRNARSPPRNLGKAAGAETGEALAAREE
GIEEALLMGGDAFTPMCAQALNGLPLRSNVNPERRVANTVKLAAEADICE
AKAKAEKLVGISSSSPVSPVITALTDETIPRPPRNADDLSIFAGGCVETE
HGFPSDRTAQANGSDFDISISERLKVDGQEGSKGATSVVEHEGAVSEKIN
NAHLLAIEGGCVGTEHGFPDWAWQTDPHEFDISIAERLRMSAQDGGRDGG
SGRTARRRRHAKAPSHAVPPSLTARNASPGGKKRKKRNSSTNEEVRVVDA
PDCLDMVTDQDQGFSSPGKRERRVSSSPANLERIEKK*
back to top

mRNA from alignment at H-elongata_contig15719:395..7446-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15719.3721.1 ID=mRNA_H-elongata_contig15719.3721.1|Name=mRNA_H-elongata_contig15719.3721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7052bp|location=Sequence derived from alignment at H-elongata_contig15719:395..7446- (Himanthalia elongata Himel1 dioecious)
AGATACCTGGAGGAGAAGTGGAGGGAGTCCGGAAAAGGGGTGATCAAGCT
CCAGGGGGAATCTTTCCCGCTTGTGTGTCCAAAGGCACCCTCGCAGATGA
ACGGCTGTGACTGCGGGGTGTACGTTCTGCGCTACGCGAAGGTGAGGTAG
AAAGAAACCTCGACTGGTGGCATAGCTTTATTTCATAAATAGAAAGATTA
GGCAGAAGCCTCTCCTTGTTGTTGTTGCTGTTGTCATATCATTTGTTCTG
GACGTCTGACTTGTGGATGCACCAGCCGGGGTCACACAGGAGGAAGGTCA
CAGACTATTTCTCCACCTTCTTTTCGCATCCACGTATCTCTCCCTCTCCC
TCTCCCTCTCTGTTGACAGTATGTTGGCTTCTATCCAACAATATATCTAT
ACGTGTGCTCAAAATCACAGATACGGTTTGTATGCACACAGAGAGACCAC
CCCCGCCGCTCACATTCCTCTTCCGCTCGATAGGAAATATGTCAGCAGTG
GCCGCGGGTGACTTCAGCCCACGTGGAGGACGGGCTCGCGCGTTACTTCA
CGCCAGAGCTCTTTGGCCCGGCGGACATCGTCGAAGAGCGGCGACAGCTC
AGAGAGCTCCTCGGCGAATGCAAGTGAGTGCTACGTATTCGCGCCAGAAT
CACGGCGACCCTTGAACGAGCGGCTGCCGTTGTTGGCTCTTCTTTGAGAA
TGTCACATCGCTGTGGGTAGGCTCCTAAAATATGCCGTTGAGAGAGCGTG
GCAGTATCGAACGAAAGAAATATCTCGAGTCGCAGGATTCCCGGCGGCTC
CTCCGTCGGAATGCGGCCGGCAGAAGCGGGGGTTCAGTTTGATAACGTCA
AGGCCGAAGACATCTTGTGGTTAACGTTTCAGAGTCTGAGGTCGTTGTTG
TTGCCGGTGAGGTCTGTGTGGCCTACGCAAGGGTTCCCCACACACGGGTG
GTAATTGCTTGCCCCCCACCATTCGTCGACGCCTGATTCTCTTTCGCGCA
CAGGATTCGGTACGAGAAGGAAAAGCAGCTGCGGAAGCAGAAGAAGCCCT
CCAGGTTCAAGGAAAAAGGCAATTTTGCGGAAAAGGGGGCTAGGGCGGAC
CCCATGGACTGCAAGAGGACCCCCTGTGCCGCGGTGGGTATGGCGCCAGC
CACAACCACCGCAGCCGCCGCACCTGCGCCTTCATTAGAGCCTGATCCCG
GAATCCCAACACATGATGCCTTCGCGACCATCGAACCCACCACGAACGCT
GCTACAACCCCCGTTTCCGATCCAGCTCCAGGTCCAGCCTTGGCCCCAGC
GACCACAACCGCTTGCGCCTTTCCATCCGTCGATAAGGGCCGCGAGAGAT
TGGAGTCCGTCTGTGCTGCCACCGCTATGACTGCCTTGTCCGACGTACGG
ACCTCGGGCGAAGCATCAACATGTGGCGCCGAGAGTTTCGGCATCCCGTC
CCCGAGCCACTGCGCATCTAGCGAGATTGAAGCTTCAGACGCCAAAATAG
AGGAGAGCAAGAGCGGTACCAACGACGAGGATTACAACAACCACGTTAGC
GCCGCGAGAACGGCTTCGGGGGGGAGGCGGAAGTTATTGGAATTCCAAGG
ACCGTCGGAAGGCGGGATGGAGGGCGATCGGGGAGGTGACGTCGACGGCG
ATGGTGCAGAGGGAGCTGCAAAAAAAGAGGATGCCGCATTCGTTATGGCG
CCAGTTACCCCGCTTAGGGATCCGTCCGGCGTAGAGATGGAGAAGATTGT
CATGCGCGGGGCCTCTGGTAGGGCGGTCAACTCGGCGAAGGCGGCAAGGC
GAAGAAAAAGCTTGGCGGGGAACAAGGGGCACGAGTGTTGCGCTGCAGTC
ACAACGACGGTTGGCAAGTGCTCGAGTGTGGCGGACACGGACCAAGCGGA
GGAAGCTCAGCAAGAGCTCGACATTGACGGTAGTTCGCAAGGGTTTGGAG
GCATTGACGTTGAGGATGGTGGTACCGGAAGAGATGAGAGCTCGTGTATA
CCAGTTCGGAGAAGGAAGAAGCTGCAGTCAGAGTCGACGAAGGGTTGTCC
CCTAACCACACCGGCCCTGGCAAGCGTTGGGGAGAAAATCAGTGGAAAAG
ATGGACTGCGAGCGAGCCACGAGGTTGGTGATCTCAAAAGGGAGGATGCT
GAGAGACAAAGCGCTGATGCTGGGTGTTTGTCATTCCAGCAGCCTGGAGA
CAGAGGATTCGGCGGCGAAGTGGTCCCATCTACCACAGGAGATTATACCG
CCACCATTCATTCGGCCTTGGTAGGCGTTTTTGGCCCAGAGGGAAGTGGG
GATGATGGGCAACGAGCGAGAAACAAGGTTGGTCCACCCGATGAGTTAAC
GAAGAAGCGGAGTGACGAAGTTGGGTGTTTTTCCGCCCAGCGGCCTAGGG
GCAAAGGATCGGGCGGTAAAGCGATCCCTTCTCTTGCTGGCGCTGGTGCA
ACCAGCGATCATTTTAGCTGCCAGAGCGCGGTTGGACAAAGTGCCCAAAG
CAAATCTTCGATTCGAAGACGGCGCAACGCCAGGTCGCCACCCCGGAATC
TAGGCAAGGCGGCCGGTGCCGAAACTGGAGAGGCCTTGGCCGCACGGGAA
GAAGGAATTGAGGAAGCATTACTCATGGGCGGGGACGCGTTCACGCCCAT
GTGTGCGCAGGCGCTGAACGGCTTGCCTCTGCGATCCAATGTCAACCCGG
AGCGGAGGGTCGCAAATACGGTCAAGCTCGCGGCGGAGGCAGATATTTGC
GAGGCAAAGGCAAAAGCCGAGAAGCTCGTTGGAATATCGAGTTCGTCTCC
CGTTTCCCCGGTCATCACCGCCCTTACCGACGAGACTATTCCCCGACCAC
CTAGAAACGCCGACGATTTGTCCATTTTTGCGGGAGGATGCGTCGAAACG
GAGCACGGTTTTCCGTCGGACAGGACCGCGCAAGCGAATGGTTCTGATTT
CGATATTTCTATATCCGAGCGTCTGAAGGTGGATGGACAAGAAGGGAGCA
AAGGTGCCAAATCGGTGGTTGAGCATGATGGTGCGGAGAGTGAGAAAGGA
AAGAATGCTGATGTGTTTGCTAATGAGGGTGGATGCGTCGAAACGGAGCA
CGGTTCTCCGTCGGACAGGACCGCGCAAGCGAATGGGTCTGGTTTTGATA
ATTCTATATCCGAGCGTCTGAAGGGGGGCGGGCAAGAAGGGAGCAAAGGT
GCCACATCGGTGGTTGAGCATGAGGGTGCGGTGAGTGAGAAGATAAATAA
TGCCCATGTGCTTGCTATCGAGGGTGCCGCATTCGTTATGGCGCCAGTTA
CCCCGCTTAGGGATCCGTCCGGCGTAGAGATGGAGAAGATTGTCATGCGC
GGGGCCTCTGGTAGGGCGGTCAACTCGGCGAAGGCGGCAAGGCGAAGAAA
AAGCTTGGCGGGGAACAAGGGGCACGAGTGTTGCGCTGCAGTCACAACGA
CGGTTGGCAAGTGCTCGAGTGTGGCGGACACGGACCAAGCGGAGGAAGCT
CAGCAAGAGCTCGACATTGACGGTAGTTCGCAAGGGTTTGGAGGCATTGA
CGTTGAGGATGGTGGTACCGGAAGAGATGAGAGCTCGTGTATACCAGTTC
GGAGAAGGAAGAAGCTGCAGTCAGAGTCGACGAAGGGTTGTCCCCTAACC
ACACCGGCCCTGGCAAGCGTTGGGGAGAAAATCAGTGGAAAAGATGGACT
GCGAGCGAGCCACGAGGTTGGTGATCTCAAAAGGGAGGATGCTGAGAGAC
AAAGCGCTGATGCTGGGTGTTTGTCATTCCAGCAGCCTGGAGACAGAGGA
TTCGGCGGCGAAGTGGTCCCATCTACCACAGGAGATTATACCGCCACCAT
TCATTCGGCCTTGGTAGGCGTTTTTGGCCCAGAGGGAAGTGGGGATGATG
GGCAACGAGCGAGAAACAAGGTTGGTCCACCCGATGAGTTAACGAAGAAG
CGGAGTGACGAAGTTGGGTGTTTTTCCGCCCAGCGGCCTAGGGGCAAAGG
ATCGGGCGGTAAAGCGATCCCTTCTCTTGCTGGCGCTGGTGCAACCAGCG
ATCATTTTAGCTGCCAGAGCGCGGTTGGACAAAGTGCCCAAAGCAAATCT
TCGATTCGAAGACGGCGCAACGCCAGGTCGCCACCCCGGAATCTAGGCAA
GGCGGCCGGTGCCGAAACTGGAGAGGCCTTGGCCGCACGGGAAGAAGGAA
TTGAGGAAGCATTACTCATGGGCGGGGACGCGTTCACGCCCATGTGTGCG
CAGGCGCTGAACGGCTTGCCTCTGCGATCCAATGTCAACCCGGAGCGGAG
GGTCGCAAATACGGTCAAGCTCGCGGCGGAGGCAGATATTTGCGAGGCAA
AGGCAAAAGCCGAGAAGCTCGTTGGAATATCGAGTTCGTCTCCCGTTTCC
CCGGTCATCACCGCCCTTACCGACGAGACTATTCCCCGACCACCTAGAAA
CGCCGACGATTTGTCCATTTTTGCGGGAGGATGCGTCGAAACGGAGCACG
GTTTTCCGTCGGACAGGACCGCGCAAGCGAATGGTTCTGATTTCGATATT
TCTATATCCGAGCGTCTGAAGGTGGATGGACAAGAAGGGAGCAAAGGTGC
CAAATCGGTGGTTGAGCATGATGGTGCGGAGAGTGAGAAAGGAAAGAATG
CTGATGTGTTTGCTAATGAGGGTGGATGCGTCGAAACGGAGCACGGTTCT
CCGTCGGACAGGACCGCGCAAGCGAATGGGTCTGGTTTTGATAATTCTAT
ATCCGAGCGTCTGAAGGGGGGCGGGCAAGAAGGGAGCAAAGGTGCCACAT
CGGTGGTTGAGCATGAGGGTGCGGTGAGTGAGAAAATAAATAATGCCCAT
TTGCTTGCTATCGAGGGAGGATGTGTCGGAACGGAGCACGGGTTCCCGGA
CTGGGCTTGGCAGACGGACCCGCATGAATTCGACATATCCATAGCCGAGC
GTCTGAGGATGAGCGCACAGGACGGGGGAAGAGACGGTGGCAGCGGCCGC
ACCGCGCGACGAAGGAGGCATGCGAAAGCTCCGTCGCACGCTGTTCCTCC
TTCGTTGACCGCTAGAAATGCAAGTCCCGGGGGGAAAAAGAGGAAGAAGC
GAAATTCGTCCACCAACGAAGAAGTGAGGGTGGTTGACGCGCCGGATTGC
TTGGACATGGTCACCGACCAAGATCAAGGTTTTTCGTCGCCCGGAAAGCG
CGAGCGGCGTGTTTCCTCCTCACCAGCGAATCTCGAGCGGATAGAGAAAA
AATAATGTGACGACAGAGCCGTTGGAGAACAACACGGCAGGGCGGGCACG
ACTTTTCGAGGGAGGCCAGGTGGTGGAATGGCGGGTGTAGGCAGGAAGAG
TCGCAAGAAACCGTCGAAGCGTTCGAGCGTCCAGGCTCCGTTGTCCGAGT
CCGACGATGACCCGGAGGTTAGTGCCCCCGTGTATGGAGAGCAGTGTCGG
GAAGGAAGGTGAGCGGATCGGAGTTGGTTACATGTGTAATGCTGAGACGG
AGTTCTTGAGACGGTTTGTCACTTTTTGTCTCACCCGAGAAAGCCTTTGC
CCCGCCGTTATCCTTTGCGGGAACTTCATTATATATATATATTGAAGGGC
TATCCGCAGTATTTCTGACAGTATCGCACTTTACATCACGTTTAGTTTCG
GGTTTACACGCGTCATATGGACTTTATGCTTCGGAAGATAGATGTCGGGA
AGGTAGGCTATTTGGCGTGGCCTCTCCTCTTTGATTTACTTTGCGAGCGA
ACCACAAAACCACGTCTGTATTAATAGGAACATCATGTGATATGTAGCTA
TTTGCATCTCGTAGCAGTGTTGTCCGTTCCTTGTCGTATGTTGGCGGTAC
CGCAAAGGCTTGGCTCGCAATTTATCCACGGGGTTGCTGGTTTGGGTGTG
TAGCCCAATTTTGAAAAATATCGCTTTATGGAACGCTTCAGCTTATGCCT
TTTTCTCCCCCCCGCCCTCCTACCTCTCTGTTTTGTGGCTGACGTCGCTG
CGCGTGTTATACGGCGTGTCCCTTGGGAAGTAGGGTTGATTTGGTTATCG
CTTCTTGGTTGAAATGGTCGTGGTTCCCTCATATCCCGTAGAATAAGGAT
ACCAAGATCATCCGGAATTTGTTGAACGTGCGACAATGTCCCCAAACCAA
GCGTTTGCCAAAACAAGAATCTCCAGCCTGAAGTTTCACTCTGAACAGTT
GCGCCGCTCTGCCCTCGCAATGTCGCCAAGGATTCACGGCCTCTTGAAGC
TAAAAAGTATGAATATATCGGGGATAATTTACGAAGGCCTGCTTGGTACT
TTACTATGTACAAGAGAATAAGATAATGCAGTGAGTGAGGAAGTGTCTTT
TTATTAAAAAAACCTTGAACTCATTCCAACCCTCCGAACATCTACACCTT
CTTAGAGCCGTGAGAGGTGCAGTCTAGGGGACCAACTATCGTCAGGTTCG
TGTGTGTACATTACTACCTTCGAGCACGAAATCGTCACACGCGATAGATC
GTTTTGCCCAATTAATTAAGTTCATTGGGTCAACGGAATAATGTCAGGGA
TCCCATTATTATCCCGTACACTTTACATTATTATTCGTCATGTGGGGACG
CCAAACCAAAGCCTAGAGAGTGGATTTTGTAATCCTAGAGAGTGGACTGT
GTGATAAGAAGACGGGGTGTAGGAGAGAGAGAAAAGGGGGGAATAAATGA
GTGAGCTGTTGTTGTTGGTCACACATTTATATTTATATAAAAAACCTTGA
ACTCATTCCAACCCTTCGAACATCCACACCTTAGCGCCGTGAGAGGTGCC
ATCCAGGGGACCAACTATCCTCGGGTTCGAATGTGTACATTACTACCTTT
GAGCACGAAATTGTCACACTTAAGTATATAGGTGTTATTTTTATTTTTTA
AAGACTGTTATTCCCCCGCCTTAGGAAATGACCAAAGAGTAGAACGTTAT
GATGATTGGTTCCTTATTCCCCCGCTTTAGGAAATAACCTAAGAGTAGAA
CGTTATGATGATTGGTTCTTTATTCCCCCGCTTTAGGAAATGCCCTAAGG
AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15719:395..7446-

>mRNA_H-elongata_contig15719.3721.1 ID=mRNA_H-elongata_contig15719.3721.1|Name=mRNA_H-elongata_contig15719.3721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4728bp|location=Sequence derived from alignment at H-elongata_contig15719:395..7446- (Himanthalia elongata Himel1 dioecious)
ATGGACTGCAAGAGGACCCCCTGTGCCGCGGTGGGTATGGCGCCAGCCAC
AACCACCGCAGCCGCCGCACCTGCGCCTTCATTAGAGCCTGATCCCGGAA
TCCCAACACATGATGCCTTCGCGACCATCGAACCCACCACGAACGCTGCT
ACAACCCCCGTTTCCGATCCAGCTCCAGGTCCAGCCTTGGCCCCAGCGAC
CACAACCGCTTGCGCCTTTCCATCCGTCGATAAGGGCCGCGAGAGATTGG
AGTCCGTCTGTGCTGCCACCGCTATGACTGCCTTGTCCGACGTACGGACC
TCGGGCGAAGCATCAACATGTGGCGCCGAGAGTTTCGGCATCCCGTCCCC
GAGCCACTGCGCATCTAGCGAGATTGAAGCTTCAGACGCCAAAATAGAGG
AGAGCAAGAGCGGTACCAACGACGAGGATTACAACAACCACGTTAGCGCC
GCGAGAACGGCTTCGGGGGGGAGGCGGAAGTTATTGGAATTCCAAGGACC
GTCGGAAGGCGGGATGGAGGGCGATCGGGGAGGTGACGTCGACGGCGATG
GTGCAGAGGGAGCTGCAAAAAAAGAGGATGCCGCATTCGTTATGGCGCCA
GTTACCCCGCTTAGGGATCCGTCCGGCGTAGAGATGGAGAAGATTGTCAT
GCGCGGGGCCTCTGGTAGGGCGGTCAACTCGGCGAAGGCGGCAAGGCGAA
GAAAAAGCTTGGCGGGGAACAAGGGGCACGAGTGTTGCGCTGCAGTCACA
ACGACGGTTGGCAAGTGCTCGAGTGTGGCGGACACGGACCAAGCGGAGGA
AGCTCAGCAAGAGCTCGACATTGACGGTAGTTCGCAAGGGTTTGGAGGCA
TTGACGTTGAGGATGGTGGTACCGGAAGAGATGAGAGCTCGTGTATACCA
GTTCGGAGAAGGAAGAAGCTGCAGTCAGAGTCGACGAAGGGTTGTCCCCT
AACCACACCGGCCCTGGCAAGCGTTGGGGAGAAAATCAGTGGAAAAGATG
GACTGCGAGCGAGCCACGAGGTTGGTGATCTCAAAAGGGAGGATGCTGAG
AGACAAAGCGCTGATGCTGGGTGTTTGTCATTCCAGCAGCCTGGAGACAG
AGGATTCGGCGGCGAAGTGGTCCCATCTACCACAGGAGATTATACCGCCA
CCATTCATTCGGCCTTGGTAGGCGTTTTTGGCCCAGAGGGAAGTGGGGAT
GATGGGCAACGAGCGAGAAACAAGGTTGGTCCACCCGATGAGTTAACGAA
GAAGCGGAGTGACGAAGTTGGGTGTTTTTCCGCCCAGCGGCCTAGGGGCA
AAGGATCGGGCGGTAAAGCGATCCCTTCTCTTGCTGGCGCTGGTGCAACC
AGCGATCATTTTAGCTGCCAGAGCGCGGTTGGACAAAGTGCCCAAAGCAA
ATCTTCGATTCGAAGACGGCGCAACGCCAGGTCGCCACCCCGGAATCTAG
GCAAGGCGGCCGGTGCCGAAACTGGAGAGGCCTTGGCCGCACGGGAAGAA
GGAATTGAGGAAGCATTACTCATGGGCGGGGACGCGTTCACGCCCATGTG
TGCGCAGGCGCTGAACGGCTTGCCTCTGCGATCCAATGTCAACCCGGAGC
GGAGGGTCGCAAATACGGTCAAGCTCGCGGCGGAGGCAGATATTTGCGAG
GCAAAGGCAAAAGCCGAGAAGCTCGTTGGAATATCGAGTTCGTCTCCCGT
TTCCCCGGTCATCACCGCCCTTACCGACGAGACTATTCCCCGACCACCTA
GAAACGCCGACGATTTGTCCATTTTTGCGGGAGGATGCGTCGAAACGGAG
CACGGTTTTCCGTCGGACAGGACCGCGCAAGCGAATGGTTCTGATTTCGA
TATTTCTATATCCGAGCGTCTGAAGGTGGATGGACAAGAAGGGAGCAAAG
ATGGACTGCAAGAGGACCCCCTGTGCCGCGGTGGGTATGGCGCCAGCCAC
AACCACCGCAGCCGCCGCACCTGCGCCTTCATTAGAGCCTGATCCCGGAA
TCCCAACACATGATGCCTTCGCGACCATCGAACCCACCACGAACGCTGCT
ACAACCCCCGTTTCCGATCCAGCTCCAGGTCCAGCCTTGGCCCCAGCGAC
CACAACCGCTTGCGCCTTTCCATCCGTCGATAAGGGCCGCGAGAGATTGG
AGTCCGTCTGTGCTGCCACCGCTATGACTGCCTTGTCCGACGTACGGACC
TCGGGCGAAGCATCAACATGTGGCGCCGAGAGTTTCGGCATCCCGTCCCC
GAGCCACTGCGCATCTAGCGAGATTGAAGCTTCAGACGCCAAAATAGAGG
AGAGCAAGAGCGGTACCAACGACGAGGATTACAACAACCACGTTAGCGCC
GCGAGAACGGCTTCGGGGGGGAGGCGGAAGTTATTGGAATTCCAAGGACC
GTCGGAAGGCGGGATGGAGGGCGATCGGGGAGGTGACGTCGACGGCGATG
GTGCAGAGGGAGCTGCAAAAAAAGAGGATGCCGCATTCGTTATGGCGCCA
GTTACCCCGCTTAGGGATCCGTCCGGCGTAGAGATGGAGAAGATTGTCAT
GCGCGGGGCCTCTGGTAGGGCGGTCAACTCGGCGAAGGCGGCAAGGCGAA
GAAAAAGCTTGGCGGGGAACAAGGGGCACGAGTGTTGCGCTGCAGTCACA
ACGACGGTTGGCAAGTGCTCGAGTGTGGCGGACACGGACCAAGCGGAGGA
AGCTCAGCAAGAGCTCGACATTGACGGTAGTTCGCAAGGGTTTGGAGGCA
TTGACGTTGAGGATGGTGGTACCGGAAGAGATGAGAGCTCGTGTATACCA
GTTCGGAGAAGGAAGAAGCTGCAGTCAGAGTCGACGAAGGGTTGTCCCCT
AACCACACCGGCCCTGGCAAGCGTTGGGGAGAAAATCAGTGGAAAAGATG
GACTGCGAGCGAGCCACGAGGTTGGTGATCTCAAAAGGGAGGATGCTGAG
AGACAAAGCGCTGATGCTGGGTGTTTGTCATTCCAGCAGCCTGGAGACAG
AGGATTCGGCGGCGAAGTGGTCCCATCTACCACAGGAGATTATACCGCCA
CCATTCATTCGGCCTTGGTAGGCGTTTTTGGCCCAGAGGGAAGTGGGGAT
GATGGGCAACGAGCGAGAAACAAGGTTGGTCCACCCGATGAGTTAACGAA
GAAGCGGAGTGACGAAGTTGGGTGTTTTTCCGCCCAGCGGCCTAGGGGCA
AAGGATCGGGCGGTAAAGCGATCCCTTCTCTTGCTGGCGCTGGTGCAACC
AGCGATCATTTTAGCTGCCAGAGCGCGGTTGGACAAAGTGCCCAAAGCAA
ATCTTCGATTCGAAGACGGCGCAACGCCAGGTCGCCACCCCGGAATCTAG
GCAAGGCGGCCGGTGCCGAAACTGGAGAGGCCTTGGCCGCACGGGAAGAA
GGAATTGAGGAAGCATTACTCATGGGCGGGGACGCGTTCACGCCCATGTG
TGCGCAGGCGCTGAACGGCTTGCCTCTGCGATCCAATGTCAACCCGGAGC
GGAGGGTCGCAAATACGGTCAAGCTCGCGGCGGAGGCAGATATTTGCGAG
GCAAAGGCAAAAGCCGAGAAGCTCGTTGGAATATCGAGTTCGTCTCCCGT
TTCCCCGGTCATCACCGCCCTTACCGACGAGACTATTCCCCGACCACCTA
GAAACGCCGACGATTTGTCCATTTTTGCGGGAGGATGCGTCGAAACGGAG
CACGGTTTTCCGTCGGACAGGACCGCGCAAGCGAATGGTTCTGATTTCGA
TATTTCTATATCCGAGCGTCTGAAGGTGGATGGACAAGAAGGGAGCAAAG
GTGCCACATCGGTGGTTGAGCATGAGGGTGCGGTGAGTGAGAAAATAAAT
AATGCCCATTTGCTTGCTATCGAGGGAGGATGTGTCGGAACGGAGCACGG
GTTCCCGGACTGGGCTTGGCAGACGGACCCGCATGAATTCGACATATCCA
TAGCCGAGCGTCTGAGGATGAGCGCACAGGACGGGGGAAGAGACGGTGGC
AGCGGCCGCACCGCGCGACGAAGGAGGCATGCGAAAGCTCCGTCGCACGC
TGTTCCTCCTTCGTTGACCGCTAGAAATGCAAGTCCCGGGGGGAAAAAGA
GGAAGAAGCGAAATTCGTCCACCAACGAAGAAGTGAGGGTGGTTGACGCG
CCGGATTGCTTGGACATGGTCACCGACCAAGATCAAGGTTTTTCGTCGCC
CGGAAAGCGCGAGCGGCGTGTTTCCTCCTCACCAGCGAATCTCGAGCGGA
TAGAGAAAAAATAAGTGCCACATCGGTGGTTGAGCATGAGGGTGCGGTGA
GTGAGAAAATAAATAATGCCCATTTGCTTGCTATCGAGGGAGGATGTGTC
GGAACGGAGCACGGGTTCCCGGACTGGGCTTGGCAGACGGACCCGCATGA
ATTCGACATATCCATAGCCGAGCGTCTGAGGATGAGCGCACAGGACGGGG
GAAGAGACGGTGGCAGCGGCCGCACCGCGCGACGAAGGAGGCATGCGAAA
GCTCCGTCGCACGCTGTTCCTCCTTCGTTGACCGCTAGAAATGCAAGTCC
CGGGGGGAAAAAGAGGAAGAAGCGAAATTCGTCCACCAACGAAGAAGTGA
GGGTGGTTGACGCGCCGGATTGCTTGGACATGGTCACCGACCAAGATCAA
GGTTTTTCGTCGCCCGGAAAGCGCGAGCGGCGTGTTTCCTCCTCACCAGC
GAATCTCGAGCGGATAGAGAAAAAATAA
back to top