mRNA_H-elongata_contig157128.3720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157128.3720.1
Unique NamemRNA_H-elongata_contig157128.3720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157128.3720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157128contigH-elongata_contig157128:124..1450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1327
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157128.3720.1prot_H-elongata_contig157128.3720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157128 385..1140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.9203873-UTR-H-elongata_contig157128:123..3841622929927.9203873-UTR-H-elongata_contig157128:123..384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157128 124..384 +
1691679211.3150911-UTR-H-elongata_contig157128:123..3841691679211.3150911-UTR-H-elongata_contig157128:123..384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157128 124..384 +
1622929927.960587-UTR-H-elongata_contig157128:1140..14501622929927.960587-UTR-H-elongata_contig157128:1140..1450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157128 1141..1450 +
1691679211.3342562-UTR-H-elongata_contig157128:1140..14501691679211.3342562-UTR-H-elongata_contig157128:1140..1450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157128 1141..1450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.9401195-CDS-H-elongata_contig157128:384..11401622929927.9401195-CDS-H-elongata_contig157128:384..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157128 385..1140 +
1691679211.3244898-CDS-H-elongata_contig157128:384..11401691679211.3244898-CDS-H-elongata_contig157128:384..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157128 385..1140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157128.3720.1

>prot_H-elongata_contig157128.3720.1 ID=prot_H-elongata_contig157128.3720.1|Name=mRNA_H-elongata_contig157128.3720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MSVACISETGEDDGLEEEAFSGGARSLEFVERRTLFPETEWWFATLRKLK
LGRGFNSLVDGVLWPTSLEELKFGWDFNQPVDNVRWPASLRQLTFGYCFD
QPIDKVTWPELLQEMTLGLRFNQRLDEVDWPTSLRKLSFGKRFNQPIAGV
AWPRSLQQLSFGWDFNQPIVGATWPPSLEQLAFGQDFNQQIDGVTWPAAL
QELIFGESFNQPVHKVAWPDSLRRITFGKDFDQPMDALQDRGIKVTILRC
C*
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mRNA from alignment at H-elongata_contig157128:124..1450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157128.3720.1 ID=mRNA_H-elongata_contig157128.3720.1|Name=mRNA_H-elongata_contig157128.3720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1327bp|location=Sequence derived from alignment at H-elongata_contig157128:124..1450+ (Himanthalia elongata Himel1 dioecious)
GGGCGCATCAACCTCGGGCTGGGCGCTTTGCTAGTCGCCCTCGGCACCGC
CCGCGGCGATGCCCAATGGTACGCGCCGACGAGCCGCCTGCAGCTTGTGT
GTCTCGACCTCTGCGCGGCCTGGCGCGAGCTCCTGTGGCCGCGCGTCATC
GTTACCGCGGAAACACCTCGGTGGCTGTGGCTGCGCCAGGAGAAGATTCG
AGTCCAGGGCGCTTCGGCCTCCCGCGTCCCCGCGTTGAGGGTGCACACGA
TCACGTGGAAGATGTCCGTGGCGTGCATTTCGGAGACGGGGGAAGATGAC
GGCCTGGAGGAGGAGGCCTTCTCGGGCGGGGCGAGATCGTTGGAGTTTGT
GGAGAGACGGACGTTGTTTCCGGAGACGGAATGGTGGTTCGCCACACTGC
GGAAGCTCAAGCTGGGGAGAGGATTCAATAGCTTGGTCGACGGCGTCCTG
TGGCCGACTTCGCTGGAGGAGCTAAAGTTCGGATGGGACTTCAATCAGCC
CGTCGACAATGTCAGGTGGCCGGCGTCGCTGCGGCAGCTGACATTCGGCT
ACTGTTTCGACCAGCCGATAGACAAGGTCACGTGGCCGGAGTTGCTTCAG
GAGATGACGCTGGGATTACGCTTCAACCAGCGACTCGACGAAGTCGATTG
GCCGACCTCGCTGCGGAAGCTGTCCTTCGGGAAAAGGTTCAACCAGCCGA
TCGCAGGCGTCGCGTGGCCGAGGTCCCTCCAGCAGCTGTCCTTCGGTTGG
GATTTCAATCAGCCGATTGTCGGTGCGACCTGGCCACCCTCGCTGGAGCA
GCTCGCGTTCGGACAGGACTTCAACCAACAGATCGACGGGGTGACGTGGC
CCGCGGCGCTGCAGGAGCTGATCTTCGGGGAGAGCTTCAACCAACCGGTG
CACAAGGTCGCGTGGCCGGACTCGCTCCGACGGATAACGTTCGGGAAGGA
TTTTGACCAGCCGATGGACGCTCTTCAAGATCGTGGGATCAAGGTTACAA
TTCTCCGCTGTTGCTAGCCCCCCTCCCGTTGGGTCTAATAATAGTACGCT
GTTGCGTAATCCCGAAACCCTTCGTTCCGTGACGGTGTGCCTGACACTTG
TGTGACGAGGAACGTTTTTTTATAGCTACCCGTTTGAAATACGACCTCGC
TCCGAGGAGGCGTTACGGACCCGTCGCGACCTCCTGCTTGCTGGACGAGA
AAGAGGGTACATTCATACGAGCTCGCGCGCGGGGTCACTCAGGGTAATAA
GATCGTACGAAGGGAAAAAAACGTCGAGGGGGATTGGAGAGAAACGTCGC
GCTCACCGATGGTGCAAGAAGGGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig157128:124..1450+

>mRNA_H-elongata_contig157128.3720.1 ID=mRNA_H-elongata_contig157128.3720.1|Name=mRNA_H-elongata_contig157128.3720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig157128:124..1450+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGTGGCGTGCATTTCGGAGACGGGGGAAGATGACGGCCTGGAGGA
GGAGGCCTTCTCGGGCGGGGCGAGATCGTTGGAGTTTGTGGAGAGACGGA
CGTTGTTTCCGGAGACGGAATGGTGGTTCGCCACACTGCGGAAGCTCAAG
CTGGGGAGAGGATTCAATAGCTTGGTCGACGGCGTCCTGTGGCCGACTTC
GCTGGAGGAGCTAAAGTTCGGATGGGACTTCAATCAGCCCGTCGACAATG
TCAGGTGGCCGGCGTCGCTGCGGCAGCTGACATTCGGCTACTGTTTCGAC
CAGCCGATAGACAAGGTCACGTGGCCGGAGTTGCTTCAGGAGATGACGCT
GGGATTACGCTTCAACCAGCGACTCGACGAAGTCGATTGGCCGACCTCGC
TGCGGAAGCTGTCCTTCGGGAAAAGGTTCAACCAGCCGATCGCAGGCGTC
GCGTGGCCGAGGTCCCTCCAGCAGCTGTCCTTCGGTTGGGATTTCAATCA
GCCGATTGTCGGTGCGACCTGGCCACCCTCGCTGGAGCAGCTCGCGTTCG
GACAGGACTTCAACCAACAGATCGACGGGGTGACGTGGCCCGCGGCGCTG
CAGGAGCTGATCTTCGGGGAGAGCTTCAACCAACCGGTGCACAAGGTCGC
GTGGCCGGACTCGCTCCGACGGATAACGTTCGGGAAGGATTTTGACCAGC
CGATGGACGCTCTTCAAGATCGTGGGATCAAGGTTACAATTCTCCGCTGT
TGCTAGATGTCCGTGGCGTGCATTTCGGAGACGGGGGAAGATGACGGCCT
GGAGGAGGAGGCCTTCTCGGGCGGGGCGAGATCGTTGGAGTTTGTGGAGA
GACGGACGTTGTTTCCGGAGACGGAATGGTGGTTCGCCACACTGCGGAAG
CTCAAGCTGGGGAGAGGATTCAATAGCTTGGTCGACGGCGTCCTGTGGCC
GACTTCGCTGGAGGAGCTAAAGTTCGGATGGGACTTCAATCAGCCCGTCG
ACAATGTCAGGTGGCCGGCGTCGCTGCGGCAGCTGACATTCGGCTACTGT
TTCGACCAGCCGATAGACAAGGTCACGTGGCCGGAGTTGCTTCAGGAGAT
GACGCTGGGATTACGCTTCAACCAGCGACTCGACGAAGTCGATTGGCCGA
CCTCGCTGCGGAAGCTGTCCTTCGGGAAAAGGTTCAACCAGCCGATCGCA
GGCGTCGCGTGGCCGAGGTCCCTCCAGCAGCTGTCCTTCGGTTGGGATTT
CAATCAGCCGATTGTCGGTGCGACCTGGCCACCCTCGCTGGAGCAGCTCG
CGTTCGGACAGGACTTCAACCAACAGATCGACGGGGTGACGTGGCCCGCG
GCGCTGCAGGAGCTGATCTTCGGGGAGAGCTTCAACCAACCGGTGCACAA
GGTCGCGTGGCCGGACTCGCTCCGACGGATAACGTTCGGGAAGGATTTTG
ACCAGCCGATGGACGCTCTTCAAGATCGTGGGATCAAGGTTACAATTCTC
CGCTGTTGCTAG
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