mRNA_H-elongata_contig157042.3718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157042.3718.1
Unique NamemRNA_H-elongata_contig157042.3718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.080e-27
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDI 210
            QFVTQYQQAGG+FRLR TT+CGGWHSDP +  P+V+G+DQ+AAAVLMARIAVHRTETEEV DI
Sbjct:  503 QFVTQYQQAGGRFRLRATTVCGGWHSDPNDLGPLVRGYDQQAAAVLMARIAVHRTETEEVADI 565
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S2V3Z1_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.260e-25
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            QFVTQYQ   G++RLR TT+CGGWHSDP++ AP+ +GFDQEA+AV+MAR+AVHRTE+EEV DI+
Sbjct:  265 QFVTQYQHPSGRYRLRATTVCGGWHSDPSDSAPLARGFDQEASAVIMARLAVHRTESEEVPDIL 328
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: F0XWM5_AURAN (Protein transport protein SEC23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWM5_AURAN)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   16 WRQFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            + QF+TQYQ A G++RLR TTLCG W  DP + AP+ + FDQEAAAVLMAR+AVHRTETEEV DI+
Sbjct:  491 YAQFITQYQHANGRYRLRSTTLCGAWQPDPNDSAPVARSFDQEAAAVLMARVAVHRTETEEVPDIL 556
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S2W7G0_9STRA (Protein transport protein SEC23 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7G0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.520e-21
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            QF+T YQ A GK RLR TTLCGGWHSDP + +P+ + FDQEAAAVLMAR+AV RT TEEV DI+
Sbjct:  489 QFITTYQHANGKTRLRSTTLCGGWHSDPADSSPIGRSFDQEAAAVLMARVAVFRTSTEEVADIL 552
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A8J2WHU7_9STRA (Protein transport protein SEC23 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WHU7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.440e-21
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   16 WRQFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            + QF+T YQ A GK RLR TTLCG W  DP++ +P+ + FDQEAAAVLMAR+AVHRTETEEV DI+
Sbjct:  485 YAQFLTSYQHASGKQRLRCTTLCGAWQPDPSDASPVARSFDQEAAAVLMARVAVHRTETEEVADIL 550
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S3HLG5_9STRA (Protein transport protein SEC23 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLG5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.280e-20
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDI 210
            QF+T YQ + G+F LRVTT+CGGWHSDP + AP+   FDQEAA VLMAR+AVHR  TE++ D+
Sbjct:  250 QFLTTYQASNGRFHLRVTTVCGGWHSDPADHAPIAASFDQEAATVLMARLAVHRCLTEDIADV 312
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S1G6C9_9STRA (Protein transport protein SEC23 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6C9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.430e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            QF+T+YQ + G+ RLRVTT+ G WH+D +  AP+   FDQEAAAVLMARIAVHRTETE+  DI+
Sbjct:  220 QFITRYQHSSGRHRLRVTTVAGPWHTDASTLAPVASSFDQEAAAVLMARIAVHRTETEDTLDIL 283
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S1BQW7_9STRA (Protein transport protein SEC23 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BQW7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.020e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            QF+T+YQ A G+ RLR TTLCG WHSDP +  P+   FDQEAAAVL AR+AV+RTETE+V D++
Sbjct:  507 QFITKYQHANGRTRLRSTTLCGPWHSDPNDHNPIKTSFDQEAAAVLTARLAVYRTETEDVGDVL 570
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A6U3YQE8_9STRA (Protein transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.360e-19
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            Q +T YQ A G+ RLR TTLCG WH+D  + +P+ + FDQE AAVLMARIA HRT+TEEV DI+
Sbjct:  502 QLITTYQHASGRQRLRATTLCGPWHNDTKDMSPLARSFDQETAAVLMARIATHRTDTEEVPDIL 565
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BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Match: A0A7S2JSI2_9STRA (Protein transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSI2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   22 QFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAAAVLMARIAVHRTETEEVRDII 213
            QF+T+YQ   G+ R+R TTLCG WHSDP +  P+   FDQEAAA+L AR+AVHRTETE+V D++
Sbjct:  154 QFLTRYQHMNGRTRVRSTTLCGPWHSDPNDVTPIRASFDQEAAAILTARLAVHRTETEDVGDVL 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157042.3718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK6_ECTSI2.080e-2780.95Protein transport protein SEC23 n=2 Tax=Ectocarpus... [more]
A0A7S2V3Z1_9STRA8.260e-2570.31Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
F0XWM5_AURAN1.530e-2268.18Protein transport protein SEC23 n=1 Tax=Aureococcu... [more]
A0A7S2W7G0_9STRA2.520e-2170.31Protein transport protein SEC23 n=1 Tax=Rhizochrom... [more]
A0A8J2WHU7_9STRA3.440e-2166.67Protein transport protein SEC23 n=1 Tax=Pelagomona... [more]
A0A7S3HLG5_9STRA5.280e-2063.49Protein transport protein SEC23 n=1 Tax=Spumella e... [more]
A0A7S1G6C9_9STRA2.430e-1964.06Protein transport protein SEC23 n=1 Tax=Bicosoecid... [more]
A0A7S1BQW7_9STRA5.020e-1964.06Protein transport protein SEC23 n=1 Tax=Corethron ... [more]
A0A6U3YQE8_9STRA9.360e-1962.50Protein transport protein SEC23 n=1 Tax=Dictyocha ... [more]
A0A7S2JSI2_9STRA1.350e-1860.94Protein transport protein SEC23 n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157042contigH-elongata_contig157042:284..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue6.4e-23
Seed eggNOG ortholog2880.D8LCK6
Preferred nameSEC23A
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
EggNOG free text desc.COPII-coated vesicle budding
EggNOG OGsCOG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.7506263-CDS-H-elongata_contig157042:283..4961622929927.7506263-CDS-H-elongata_contig157042:283..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157042 284..496 -
1691679211.2542617-CDS-H-elongata_contig157042:283..4961691679211.2542617-CDS-H-elongata_contig157042:283..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157042 284..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157042.3718.1prot_H-elongata_contig157042.3718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157042 284..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157042.3718.1

>prot_H-elongata_contig157042.3718.1 ID=prot_H-elongata_contig157042.3718.1|Name=mRNA_H-elongata_contig157042.3718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
ELAFPWRQFVTQYQQAGGKFRLRVTTLCGGWHSDPTNFAPMVKGFDQEAA
AVLMARIAVHRTETEEVRDII
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mRNA from alignment at H-elongata_contig157042:284..496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157042.3718.1 ID=mRNA_H-elongata_contig157042.3718.1|Name=mRNA_H-elongata_contig157042.3718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig157042:284..496- (Himanthalia elongata Himel1 dioecious)
GAACTGGCCTTCCCCTGGCGGCAGTTCGTGACGCAGTATCAGCAGGCCGG
AGGAAAGTTTCGACTGAGGGTAACAACGCTGTGCGGGGGATGGCACAGCG
ACCCGACCAACTTCGCTCCGATGGTGAAGGGTTTCGACCAAGAAGCAGCG
GCGGTGTTGATGGCGAGGATCGCGGTGCACAGGACGGAGACGGAGGAGGT
GAGAGATATTATA
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Coding sequence (CDS) from alignment at H-elongata_contig157042:284..496-

>mRNA_H-elongata_contig157042.3718.1 ID=mRNA_H-elongata_contig157042.3718.1|Name=mRNA_H-elongata_contig157042.3718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig157042:284..496- (Himanthalia elongata Himel1 dioecious)
GAACTGGCCTTCCCCTGGCGGCAGTTCGTGACGCAGTATCAGCAGGCCGG
AGGAAAGTTTCGACTGAGGGTAACAACGCTGTGCGGGGGATGGCACAGCG
ACCCGACCAACTTCGCTCCGATGGTGAAGGGTTTCGACCAAGAAGCAGCG
GCGGTGTTGATGGCGAGGATCGCGGTGCACAGGACGGAGACGGAGGAGGT
GAGAGATATTATAGAACTGGCCTTCCCCTGGCGGCAGTTCGTGACGCAGT
ATCAGCAGGCCGGAGGAAAGTTTCGACTGAGGGTAACAACGCTGTGCGGG
GGATGGCACAGCGACCCGACCAACTTCGCTCCGATGGTGAAGGGTTTCGA
CCAAGAAGCAGCGGCGGTGTTGATGGCGAGGATCGCGGTGCACAGGACGG
AGACGGAGGAGGTGAGAGATATTATA
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