mRNA_H-elongata_contig15703.3717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15703.3717.1
Unique NamemRNA_H-elongata_contig15703.3717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: D7FQ79_ECTSI (Possible haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ79_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 3.560e-146
Identity = 205/277 (74.01%), Postives = 235/277 (84.84%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGEDKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPNETLEKLFARESATPTWTMPLFAL 831
            DG  ALPGAVECLEELR +GKR+VILSNTSKRE FTM RLPKFGFR +LFDGGVTSGEEGYQ+L +NGLVGGKAVLLGWNGED DG L A+SLDYSS +E A FLLCHGPD IVDD G T T TR++G V+PY ++FQ A++RDLPMYNVNPD +VNNP+GG W+MPGL++K YE MGGRV YFGKPHKEH++TAV+KMGL  D VVHVGDSLAHDI GA++AGLDSVFIAGGI GEELG+D K  +  F L  + LE+ F+RE+ TPTWTMPLFAL
Sbjct:   38 DGRDALPGAVECLEELRSQGKRLVILSNTSKREDFTMARLPKFGFRRELFDGGVTSGEEGYQHLVQNGLVGGKAVLLGWNGEDSDGLLAALSLDYSSPKE-ATFLLCHGPDNIVDDTGATRTDTRNTGKVEPYEAVFQAAIERDLPMYNVNPDITVNNPQGGLWHMPGLLAKRYEAMGGRVTYFGKPHKEHYDTAVEKMGLGNDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGIDAKADKSTFNLSPDALERAFSRENVTPTWTMPLFAL 313          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A7S2V2E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2E7_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.620e-57
Identity = 106/265 (40.00%), Postives = 154/265 (58.11%), Query Frame = 1
Query:   67 VVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNG--EDKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMG---------LAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGV-DVKTGRPPFELPNETLEKLFARESATPTWTMPLF 825
            ++ILSN+SKR  FT++RL KFGF S  F G VTSGEE  QY+ +NGLVG KA++  W    +    F + +  +++S  E A ++LCHG   I   +G T T  +  G V  Y  L + A ++ L M   NPDF+V  P G   YMPGL+++ Y+++GG +  FGKP   HF   ++ +G         +  D ++HVGDSL HDI GAA AG+DS+FI GGI   +L + D        E+   +L  L ++ ++ P+W+  LF
Sbjct:    1 MIILSNSSKRSNFTIDRLGKFGFDSSAFSGAVTSGEEALQYIQRNGLVGQKALVFSWEDFRQADAPFFDQVQPEFASPAEGARYILCHGSQVISTALGDTSTRLQQEGIVDDYEDLLKDAAEKGLLMVVANPDFTVKKPDGSTAYMPGLLARRYQELGGPLVTFGKPGVSHFQACIRMLGQQQDGEGQPILPDRIIHVGDSLHHDIQGAADAGIDSLFIGGGIHSADLQLSDAPHELSSAEINPSSLVTLCSKYTSEPSWSSTLF 265          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A8J9WZI5_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9WZI5_PHATR)

HSP 1 Score: 193 bits (490), Expect = 1.460e-54
Identity = 116/290 (40.00%), Postives = 158/290 (54.48%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGEDKDGFLEAM----SLDYSSVREEAAFLLCHG--------PDTIVDDVGTTCTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPN-ETLEKLFARESATPTWTMPLFAL 831
            +GE  L GA EC+E L R+GK+++ILSN+S     T  RLPK GF  D F G VTSGEE   Y+ +    G K + L W        +  +    ++  S   EEA F+L HG        PD    +  T      ++G+++    + +  +DR +PM   NPDF    P G    MPG I++ YE +GG V  FGKPHKEHF   V+ +GL K+ VVHVGDS+ HDIAGA   G+ S+ + GG+  EELG++V +      LP  + LE+LF     TPT  +PL  L
Sbjct:   14 NGEHGLEGAPECVEALARQGKKLIILSNSSSLAKDTSARLPKLGFDRDAFVGAVTSGEEASHYIQET-YAGKKCLFLTWKSPKTPSPVSVLQKYGNVSISDNVEEADFILLHGCEVMRGPGPDGEASE--TDLGHFMETGNLEIVDKILKPCLDRMIPMVCANPDFIYVKPDGDVASMPGKIAERYEQLGGSVTSFGKPHKEHFEACVRDLGLPKEKVVHVGDSIYHDIAGANATGISSILVVGGVHREELGIEVGS------LPERDALEQLFHTHGETPTHVVPLLKL 294          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A7S0EVJ0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EVJ0_9CRYP)

HSP 1 Score: 188 bits (477), Expect = 1.140e-51
Identity = 113/284 (39.79%), Postives = 157/284 (55.28%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGE--DKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGTRD---SGSVK-PYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMG--LAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDV-KTGRPPFELPNETLEKLFARESATPTWTMPLF 825
            +G + LPGA+EC   L + GK++ ILSNTS+R      +L   GF  +  +  +TSGEE ++++ K  + G   V L W  E  D D FL+ +++  S V   A F+LCHG + +V D  T+  G  D    G V   Y  L + A+ R L M   N D+S   P G   +MPGLI ++Y+ MGG+V +FGKPH EHF   +K  G  +    VVHVGDSL HDI GA  A +DSVFI GG+  +++G+ V   G    E   E ++KL   E   P W +  F
Sbjct:   96 NGAIPLPGALECFNALNKAGKKIAILSNTSRRSKDAFKKLRALGFELESEESVITSGEECWKHM-KESMDGKSCVYLTWKREIEDADKFLDGLNISTSDVSS-ADFILCHGSEIVVGDPSTS-PGETDFIKHGDVSLSYNQLLKAALKRGLQMLVANADYSAVLPDGSLGHMPGLIGQQYQLMGGKVKWFGKPHPEHFQACLKTFGKDVLPTRVVHVGDSLDHDIQGAMDANIDSVFILGGVHAQDVGLRVGNDGSLSGETDEEKVDKLLTDEGYYPKWILEQF 376          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A1Z5JT37_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT37_FISSO)

HSP 1 Score: 184 bits (468), Expect = 3.850e-51
Identity = 112/279 (40.14%), Postives = 159/279 (56.99%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGE-DKDGFLEAMSLDYSSVREEAAFLLCHGPDTI--VDDVGTTCTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPN-ETLEKLFARESATPTWTMPLF 825
            DG   L GA + +  L+ +GK+++ILSN+SK   FT+ +LP+FG     F   VTSG+E   Y+ ++      A+ L W+ + D D FL+A  +   +  E+A F+L HG   +   D     C  T D   V+P   L +  V+  LPM   NPDF +    G   YMPG I++ YE++GG+V  FGKP+KEHF   ++++ L  + VVHVGDSL HDI GA  AGLDS+F+AGG+   EL         P E+P+ E+  +LF R    PT  +PLF
Sbjct:   36 DGTKGLVGAADAVRSLKARGKKLIILSNSSKLTDFTLQKLPQFGLEPSDFVHAVTSGQEACAYVRQHHFQQ-PALFLTWSSQSDADVFLQACGIPVVTRVEDAKFILLHGARRLYGTDLDLEQCYMTGDLTVVEP---LLKKCVEHQLPMICANPDFVMVRTDGRLVYMPGTIAQRYEELGGKVTSFGKPNKEHFQACLRELELPAEKVVHVGDSLHHDIMGANAAGLDSIFVAGGVHRHELD------NLPGEVPSRESCLELFERHGQFPTHVVPLF 304          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A7S0C8U6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8U6_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.160e-50
Identity = 110/292 (37.67%), Postives = 157/292 (53.77%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGW-NGEDKD--------GFLEAMSLDYSSVREEAAFLLCHGPDTIVD-----DVGTTCTGT-RDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPNETLEKLFARESATPTWTMPLFAL 831
            +G   LPGA EC+E+L  + K+ +ILSNTS     T+ +LPK GF    F+G VTSGEE   +++K      K +   W NG            G  ++  ++ +   E+A F++ HG   I       +   T  G+  ++G       + +    R+LPM   NPDF +  P G   +MPG I + YE MGG+  YFGKPH  HF   ++ +GL ++ V HVGDSL HD+AGA  +G+ S+F+ GGI  E+LG   + G  P    NE L+KLF +E  TPT  +PL  L
Sbjct:   35 NGSCGLPGAPECVEKLAAQNKKFIILSNTSSSSKATIAKLPKLGFDPINFEGAVTSGEEAGLHVSK-AYQSKKVLWFTWANGATPSPLDFLARCGSGDSRGIEVADSIEDADFIIAHGCGVIRGSGKDGEAKETSLGSFHENGDFSVLDPVLEQCAKRNLPMVCANPDFIMVKPDGSKGHMPGKIGQRYESMGGKCEYFGKPHVPHFEACLRDLGLDRNRVAHVGDSLHHDVAGANNSGIASIFVTGGIHREDLG-SPELGTLPT---NEALQKLFKKEGQTPTHVIPLLRL 321          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A0G4G895_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G895_9ALVE)

HSP 1 Score: 184 bits (467), Expect = 4.930e-49
Identity = 104/247 (42.11%), Postives = 143/247 (57.89%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGEDKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGT---RDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVK 732
            +G   LPGA++CLE L++ GK++VILSN+S++    +N L K GF  D+F G VTSGEE   YL  N   G  A  + W G + D F+EA  +    + EEA  L+  G + I +      T     R +G +K +    +  V+R +P+   NPDF V  P G   +MPG+I+  YE +GG+V  FGKP K HF  +V+ + L  + VVHVGDSL HDIAGA  AGL S+FIA GI   E    ++
Sbjct:   30 NGAYPLPGALDCLERLQKAGKKMVILSNSSRKAFDCINGLKKLGFDVDVFVGAVTSGEEASTYLRDN-FSGKIATWMRWEGRESDPFIEAAEVKIGPI-EEAEVLVLQGVEIISEGSDRPLTSAPCFRRTGDLKDHMPFLKKGVERGIPLVCANPDFQVLEPSGSRAFMPGVIAAAYEKLGGKVLRFGKPGKTHFEASVRMLELPPERVVHVGDSLEHDIAGACGAGLASIFIAEGIHKHETHTTIR 274          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: L1JPQ0_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPQ0_GUITC)

HSP 1 Score: 184 bits (467), Expect = 6.440e-49
Identity = 112/283 (39.58%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGE--DKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTC--TGTRDSGSVK-PYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMG--LAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDV-KTGRPPFELPNETLEKLFARESATPTWTMPLF 825
            +G + LPGA+EC E L++ GKR+ ILSNTS+R    + +L   GF+ D  +  +TSGEE ++++ +  + G   V L W  E  D D FL+ +++  S V   A F+LCHG + IV++  ++   TG  + G+V   Y  +  +A++R L M   N D+   N          LI ++Y+ MGG+V +FGKPH EHF   +K  G  +    VVHVGDSL HDI GAA A LDSVFI GG+  +E+G+   K G    E   E + KL A E   P W +  F
Sbjct:   39 NGAIPLPGALECFESLKKAGKRIAILSNTSRRSKDALKKLRALGFQLDSEESVITSGEECWKHMNER-MNGKSCVYLTWKREVEDDDKFLDGLNISTSDVST-ADFILCHGSEIIVENSSSSPVETGFIEHGNVLLAYQKVLAVALNRGLEMLVANADYRHANNSSN---QTSLIGQQYQLMGGKVKWFGKPHSEHFQACLKTFGEDIKYTRVVHVGDSLDHDIQGAADANLDSVFILGGVHAQEVGLTTGKDGLTTGEQDEEKINKLLADEGCHPKWILEKF 316          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: R1BTU2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BTU2_EMIHU)

HSP 1 Score: 177 bits (449), Expect = 2.290e-48
Identity = 110/279 (39.43%), Postives = 149/279 (53.41%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGV--TSGEEGYQYLAKNGLVGGKAVLLGWNGEDKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGG--CWYMPGLISKEYEDMGGRVHYFGKPHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPNETLEKLFARE-SATPTWTMPL 822
            +G  AL GA   +  L   GKR+ ILSN+SKR+ +++  LPK GF +D F      TSGEE +  L           L   +G+    +L+   +  + V E A FLL  G + + D           SG V P+  LF  A+ R LPM   NPDF V+ P+ G    Y PG I+  YE++GGRV Y+GKPH +HF   V  +GL K+ V+H+GDS+ HD+AGA  AG+   FIAGGI  E+LG+      P  ELP+    +    E  A PT T+ L
Sbjct:   27 NGATALDGAPALVARLAAAGKRLGILSNSSKRKEWSLRELPKLGFSADHFVAAAVTTSGEEAWHALGAEWRGKACVWLSKKDGDGVSDYLDGTGVGLADV-ERADFLLASGTNVVRDGASVLAVDCEQSGDVTPFEDLFSRAIARALPMICANPDF-VSPPKPGKAMTYQPGHIAARYEELGGRVIYYGKPHPQHFEACVAGLGLPKERVLHIGDSMHHDVAGAVRAGVPVAFIAGGIEHEKLGI------PSGELPSAAALRALCEEFCAIPTHTVAL 297          
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Match: A0A7S4D550_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D550_HETAK)

HSP 1 Score: 177 bits (450), Expect = 6.780e-48
Identity = 122/287 (42.51%), Postives = 167/287 (58.19%), Query Frame = 1
Query:    1 DGEVALPGAVECLEELRRKGKRVVILSNTSKREAFTMNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGL-----VGGKAVLLGWNGEDKDGFLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTT-CTGTRDSGSVKPYASLFQIAVDRDLPMYNVNPDFSVNNPRGGCWY-MPGLISKEYEDMGGRVHYFGKPHKEHFNT---AVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISGEELGVDVKTGRPPFELPNE-TLEKLFARESA-TPTWTMPLF 825
            +G  A  GA+E +E L ++GKR+VILSN+SKR+   +  L K GF  D F G VTSG+  Y+ +          +G + V+ G N +D   +L  M  + S++ EEA FLL  G   I+D V TT C  + +S +    A++   A  R LP+   NPD +    R GC   MPG+I K+YEDMGG VHY GKPH   +     A+++ G  +D V  VGDSL HDI GA+ AG++S+FI GGI  EELG+  + GR   E P++  LEKL+AR     PT +MP F
Sbjct:   85 NGTHAYQGAIEAVERLAQRGKRLVILSNSSKRKKTGVKNLRKMGFNPDHFCGFVTSGDTVYEEMISRAREPFKSLGTRCVVFG-NADDDKAYLSEMQCELSTI-EEADFLLARGNFVILDAVETTKCDRSLESEA--RVAAVLAAAAARGLPLLVANPDIA----RPGCGSPMPGVIGKQYEDMGGTVHYTGKPHSSVYELCFQALEEDGGNRDRVCAVGDSLDHDILGASRAGIESIFIIGGIHSEELGIK-EGGR---ECPSQKALEKLYARHGGGVPTHSMPAF 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15703.3717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ79_ECTSI3.560e-14674.01Possible haloacid dehalogenase-like hydrolase fami... [more]
A0A7S2V2E7_9STRA5.620e-5740.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9WZI5_PHATR1.460e-5440.00Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S0EVJ0_9CRYP1.140e-5139.79Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A1Z5JT37_FISSO3.850e-5140.14Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0C8U6_9STRA4.160e-5037.67Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A0G4G895_9ALVE4.930e-4942.11Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
L1JPQ0_GUITC6.440e-4939.58Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
R1BTU2_EMIHU2.290e-4839.43Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S4D550_HETAK6.780e-4842.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15703contigH-elongata_contig15703:1454..4775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue2e-100
Seed eggNOG ortholog2880.D7FQ79
EggNOG free text desc.Haloacid dehalogenase-like hydrolase
EggNOG OGs2QU6A@2759,COG0647@1
Ec32 ortholog descriptionpossible haloacid dehalogenase-like hydrolase family protein
Ec32 orthologEc-01_007130.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1375
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15703.3717.1prot_H-elongata_contig15703.3717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15703 1995..4667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.5850255-UTR-H-elongata_contig15703:1453..19941622929927.5850255-UTR-H-elongata_contig15703:1453..1994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 1454..1994 -
1691679211.1424942-UTR-H-elongata_contig15703:1453..19941691679211.1424942-UTR-H-elongata_contig15703:1453..1994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 1454..1994 -
1622929927.7080142-UTR-H-elongata_contig15703:4667..47751622929927.7080142-UTR-H-elongata_contig15703:4667..4775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 4668..4775 -
1691679211.242975-UTR-H-elongata_contig15703:4667..47751691679211.242975-UTR-H-elongata_contig15703:4667..4775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 4668..4775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.5994155-CDS-H-elongata_contig15703:1994..22041622929927.5994155-CDS-H-elongata_contig15703:1994..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 1995..2204 -
1691679211.1611228-CDS-H-elongata_contig15703:1994..22041691679211.1611228-CDS-H-elongata_contig15703:1994..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 1995..2204 -
1622929927.6187134-CDS-H-elongata_contig15703:2563..26201622929927.6187134-CDS-H-elongata_contig15703:2563..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 2564..2620 -
1691679211.1742594-CDS-H-elongata_contig15703:2563..26201691679211.1742594-CDS-H-elongata_contig15703:2563..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 2564..2620 -
1622929927.634038-CDS-H-elongata_contig15703:2941..30941622929927.634038-CDS-H-elongata_contig15703:2941..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 2942..3094 -
1691679211.1882837-CDS-H-elongata_contig15703:2941..30941691679211.1882837-CDS-H-elongata_contig15703:2941..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 2942..3094 -
1622929927.649559-CDS-H-elongata_contig15703:3338..34851622929927.649559-CDS-H-elongata_contig15703:3338..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 3339..3485 -
1691679211.2007723-CDS-H-elongata_contig15703:3338..34851691679211.2007723-CDS-H-elongata_contig15703:3338..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 3339..3485 -
1622929927.6708417-CDS-H-elongata_contig15703:3727..38201622929927.6708417-CDS-H-elongata_contig15703:3727..3820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 3728..3820 -
1691679211.219289-CDS-H-elongata_contig15703:3727..38201691679211.219289-CDS-H-elongata_contig15703:3727..3820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 3728..3820 -
1622929927.6903906-CDS-H-elongata_contig15703:4601..46671622929927.6903906-CDS-H-elongata_contig15703:4601..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 4602..4667 -
1691679211.2320976-CDS-H-elongata_contig15703:4601..46671691679211.2320976-CDS-H-elongata_contig15703:4601..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 4602..4667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15703.3717.1

>prot_H-elongata_contig15703.3717.1 ID=prot_H-elongata_contig15703.3717.1|Name=mRNA_H-elongata_contig15703.3717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MNRLPKFGFRSDLFDGGVTSGEEGYQYLAKNGLVGGKAVLLGWNGEDKDG
FLEAMSLDYSSVREEAAFLLCHGPDTIVDDVGTTCTGTRDSGSVKPYASL
FQIAVDRDLPMYNVNPDFSVNNPRGGCWYMPGLISKEYEDMGGRVHYFGK
PHKEHFNTAVKKMGLAKDSVVHVGDSLAHDIAGAATAGLDSVFIAGGISG
EELGVDVKTGRPPFELPNETLEKLFARESATPTWTMPLFAL*
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mRNA from alignment at H-elongata_contig15703:1454..4775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15703.3717.1 ID=mRNA_H-elongata_contig15703.3717.1|Name=mRNA_H-elongata_contig15703.3717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3322bp|location=Sequence derived from alignment at H-elongata_contig15703:1454..4775- (Himanthalia elongata Himel1 dioecious)
GATGGGGAAGTTGCCTTGCCCGGTGCAGTGGAGTGCTTGGAAGAGCTTCG AAGAAAGGGGAAACGCGTGGTTATCCTAAGCAACACGTCCAAGAGGGAGG CCTTCACGATGAACAGACTGCCCAAGTTTGGCTTCCGATCCGATTTATTC GACGGCGGGGTAACTTCTGGGGAGGTAGGCGTGAACATGTCATTTGCTAC GATAAGACGGTTGGGAGCAGAGTTTTCGCTAGGCAGTGACATGTTTTAGC TTGCAGCCATTGCAACGATTGCAACGATAGGGAGACGCTTCCTTAATGGG GAAACATTTTAGACATTTGACCCAAACATTTACCGTACTACGTCCTCGTA GGAGCCGCGGACGGTAGATAGTGCAGTATATACCGGTCGCCCGAGTGGTT CAGTTGGTAACCTTGAAATCTTTTGACGTTGGGACGTGAGTTTGAATCTC GGCGCAGTCACACGAACTGGGATTTTCTTTTCACATCATGGTCAAGAAGT AGTGGAGAACGATTATTTCGTGGGTACACAAAATTCAACGGCCGGCGAGG GAAAGGGACGGCTGAATCCTTCTATTATCGCGGCAAAAAAATAAGGCAGG CACCACAGAAGGAAGGTGGAGCAATCCTGTGTGACCCTACCCTACCCTAC CCTACCCTACCCTACCCTACCCTACCCTACCCCGGCTGGTGCCTCCACAA GTCTGACGTCCAGAATAACTAAAGGAGATGACAACACACTCTTACACACA CAATACTTGACAAGCGCTGACACACAAGAGAGACCGGGCCATCCTTACCG ATGATCGCCACTTAGGATATGCGGAGACGAATACCGAAACTGCTCATCGA CCCTTGGAATGAAACCAATGTCGTATTCTGTTCCCCACCGATCGAGCAAC GTTTACTTGAAGTTTACCAAGGCTCTTATCGCCTACCGGTTTCTCTTTTG CGCAGGAGGGCTACCAATATCTAGCCAAAAATGGGCTTGTTGGAGGGAAG GCTGTGCTACTGGGGTGGAATGGCGAAGATAAGGACGGTTTTTTGGAGGT GTGAAAACGGATCGATGAGGTGGCCGTCTAGTCCCTGTACAGTATGATCT CAATAGGGTTTATTCTCTCCCGCCAACACCACGAGTGGCGATTTCCTAGA TCCGACGGATAGCCGTGCAGGCTGATACTAGTATGCGCGAAGAGTTGTCG TATTTGGAACAAACATGCTTTCTTGCGTACCCAATGATATAGTTCACCAT CCGCTCATGATGAATTGCCATTACGATTCCCGCTTGACAGGCGATGTCGC TTGACTACTCCTCGGTTAGAGAAGAAGCAGCTTTCCTGCTCTGCCACGGG CCTGACACAATCGTGGACGACGTCGGCACGACATGCACTGGCACGCGCGA CTCAGGCAGCGTAAAGCCCTATGCATCTCTGTTTCAGGTAGTGCTCGCTA GGACAAAGTGCATAGGTCATGCACATTTGTTGGTTGGATATATATATTCT CGCAATTCTCCGCCCTGGAAGTTACTTTGCTCCAAGCTAATGCTTCAATG ACGTACGAGATTAATTGCCTCGTTCTTGATGAATGAGGAGCGCAATCCAA GGGAGGAACCGCCTGAAGACTGCCATAAGCGCGAAGTGCATTTTTCGTGC GTGCGCGTGGGGGGGGTGGATCCCCTTTCAGATAGCGGTGGATCGAGACT TGCCGATGTACAACGTGAACCCCGACTTCAGCGTAAACAACCCGCGAGGA GGTTGTTGGTACATGCCGGGATTAATCTCTAAGGAGTATGAAGACATGGG TGGTCGAGTGCACTACTTCGGGAAGCCACACAAGGTGCTCATGGATTACG AAGTGAACCGCAGCGTTTGGGGCTCCGTATGAAAATCACGGCAGCGGCTG GCTTGTATCTGCTGGACATATGCCAAGTATGACGCGGGTAGCGGCTTGCG GCTTGTAAATTTGACGTGCGGTTTGAGTATATAGTTTAAGCTTGACCACA CTCGTGTTAAGCGTCGCACCTGCGCACATGTCCTATTCGCTTCCCGAGCT GGCGGTAATTTACTAATTCCTATGTCCTCGATCCCCAACACCCCCCACTC TTTCCTTACGCGTTGTCGCCGCGGTCCATGCTACGCGACGTTATCGCTGC CCCAGGAGCACTTCAATACTGCAGTAAAGAAGATGGGTTTAGCAAAAGAC AGTGTGGTACATGTGAGTTAAAACTGCAGTATCTGCGACTACTATGACCA AAAAAACGTTTGAAAGTCAAGAAACTTTCCAGCTCACAGTAACAAGTGCG TTTCGAAGGAAATGTGGATTATGCTCGCTGTTGTTTTGCGGAGATGACTC GGACAATAAGCTCAGGGATCGATGACGTGTATATGAAAGTCGGCGGATGC CCCTGCGCGAGTTTTCGCATTGGCTGAGTTCATATCTACTCGGGGGAAAA GCATTGGTATCGGTAAAGTGCCGATTATGCAATCAGTCATTTCGTTGGTC ACATGGCGACCGTCCGTGACAACTTGCAAGCCTCCGCTTTACCGATCGTA CCTGCTCTGCTCATTCCTTAGGTGGGAGATAGTCTAGCACACGACATCGC AGGTGCGGCGACTGCGGGCTTGGATTCAGTGTTCATAGCCGGCGGCATTA GCGGCGAGGAATTAGGGGTGGACGTCAAGACCGGGAGGCCGCCGTTTGAA CTGCCAAACGAGACCCTCGAGAAACTATTTGCGCGAGAGAGCGCGACCCC CACCTGGACGATGCCGTTGTTTGCTCTCTGATAAGATGTTTTCGTGTATC TTCGTTGGTCATGACACGTGGCAACCGGTCGAGCTACTCATACGTATTTT GAGGCGGCGCTTCGCTGCGGGTGAAGCACGCTTACCACAAGCAAACCCTC ACGAGCTCGGATGTTTAAACTGTCCCCCACGCATTATATGTTTTACCAAC AGAGTCGATTCAATACTAAATAGAGCTTTAAGTTGAAATGGAATACTTTT GGTACCCAGGAAAACATATAAAGTACATCAAACCACCTATAGTCCCGTGG TACCAAACGTTAATCGAAAATCCTTGCCAAAATATCATCGGCGTGACCTG CTATTATGCACGCGAATAATAGCTCCGGAAAGTCGTAACACGGGGCGTAG TATGGATTACAAATTTAGGGTGTAAAGTTGTGGCGAGGAAGCGATTGTCC CCCGAGGATTGCAGTGTATAAAATATATCTTCTTAAAATATTTTCGAAAG AAACCGTCCCCACCACCGGCGAAGTGTGTATGAGGATATCTCGACGGCGT CGCGATCTCCTACACAACATTT
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Coding sequence (CDS) from alignment at H-elongata_contig15703:1454..4775-

>mRNA_H-elongata_contig15703.3717.1 ID=mRNA_H-elongata_contig15703.3717.1|Name=mRNA_H-elongata_contig15703.3717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig15703:1454..4775- (Himanthalia elongata Himel1 dioecious)
ATGAACAGACTGCCCAAGTTTGGCTTCCGATCCGATTTATTCGACGGCGG
GGTAACTTCTGGGGAGATGAACAGACTGCCCAAGTTTGGCTTCCGATCCG
ATTTATTCGACGGCGGGGTAACTTCTGGGGAGGAGGGCTACCAATATCTA
GCCAAAAATGGGCTTGTTGGAGGGAAGGCTGTGCTACTGGGGTGGAATGG
CGAAGATAAGGACGGTTTTTTGGAGGAGGGCTACCAATATCTAGCCAAAA
ATGGGCTTGTTGGAGGGAAGGCTGTGCTACTGGGGTGGAATGGCGAAGAT
AAGGACGGTTTTTTGGAGGCGATGTCGCTTGACTACTCCTCGGTTAGAGA
AGAAGCAGCTTTCCTGCTCTGCCACGGGCCTGACACAATCGTGGACGACG
TCGGCACGACATGCACTGGCACGCGCGACTCAGGCAGCGTAAAGCCCTAT
GCATCTCTGTTTCAGGCGATGTCGCTTGACTACTCCTCGGTTAGAGAAGA
AGCAGCTTTCCTGCTCTGCCACGGGCCTGACACAATCGTGGACGACGTCG
GCACGACATGCACTGGCACGCGCGACTCAGGCAGCGTAAAGCCCTATGCA
TCTCTGTTTCAGATAGCGGTGGATCGAGACTTGCCGATGTACAACGTGAA
CCCCGACTTCAGCGTAAACAACCCGCGAGGAGGTTGTTGGTACATGCCGG
GATTAATCTCTAAGGAGTATGAAGACATGGGTGGTCGAGTGCACTACTTC
GGGAAGCCACACAAGATAGCGGTGGATCGAGACTTGCCGATGTACAACGT
GAACCCCGACTTCAGCGTAAACAACCCGCGAGGAGGTTGTTGGTACATGC
CGGGATTAATCTCTAAGGAGTATGAAGACATGGGTGGTCGAGTGCACTAC
TTCGGGAAGCCACACAAGGAGCACTTCAATACTGCAGTAAAGAAGATGGG
TTTAGCAAAAGACAGTGTGGTACATGAGCACTTCAATACTGCAGTAAAGA
AGATGGGTTTAGCAAAAGACAGTGTGGTACATGTGGGAGATAGTCTAGCA
CACGACATCGCAGGTGCGGCGACTGCGGGCTTGGATTCAGTGTTCATAGC
CGGCGGCATTAGCGGCGAGGAATTAGGGGTGGACGTCAAGACCGGGAGGC
CGCCGTTTGAACTGCCAAACGAGACCCTCGAGAAACTATTTGCGCGAGAG
AGCGCGACCCCCACCTGGACGATGCCGTTGTTTGCTCTCTGAGTGGGAGA
TAGTCTAGCACACGACATCGCAGGTGCGGCGACTGCGGGCTTGGATTCAG
TGTTCATAGCCGGCGGCATTAGCGGCGAGGAATTAGGGGTGGACGTCAAG
ACCGGGAGGCCGCCGTTTGAACTGCCAAACGAGACCCTCGAGAAACTATT
TGCGCGAGAGAGCGCGACCCCCACCTGGACGATGCCGTTGTTTGCTCTCT
GA
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