mRNA_H-elongata_contig15703.3716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15703.3716.1
Unique NamemRNA_H-elongata_contig15703.3716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15703.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15703contigH-elongata_contig15703:853..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.5266285-UTR-H-elongata_contig15703:852..9061622929927.5266285-UTR-H-elongata_contig15703:852..906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 853..906 +
1691679211.1023624-UTR-H-elongata_contig15703:852..9061691679211.1023624-UTR-H-elongata_contig15703:852..906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15703 853..906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.5382462-CDS-H-elongata_contig15703:906..12601622929927.5382462-CDS-H-elongata_contig15703:906..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 907..1260 +
1691679211.1217127-CDS-H-elongata_contig15703:906..12601691679211.1217127-CDS-H-elongata_contig15703:906..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15703 907..1260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15703.3716.1prot_H-elongata_contig15703.3716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15703 907..1260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15703.3716.1

>prot_H-elongata_contig15703.3716.1 ID=prot_H-elongata_contig15703.3716.1|Name=mRNA_H-elongata_contig15703.3716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MNVCFFKCIACVFSPHPHSRAAVSSRLLKSHTYIYINTNRCCLPINVSRH
DSRPGSRLEFPGHFLPISRHISRPFPSTREIVNSHAIPSRQPDTLPPYSP
IPIPRPRDGNIFPYRRSG
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mRNA from alignment at H-elongata_contig15703:853..1260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15703.3716.1 ID=mRNA_H-elongata_contig15703.3716.1|Name=mRNA_H-elongata_contig15703.3716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig15703:853..1260+ (Himanthalia elongata Himel1 dioecious)
GCCGCAATAAATCAAGGAATAAATCAATAAATAAATCAAGAAGGTACCGA
GCACATGAACGTGTGTTTCTTCAAGTGCATCGCGTGTGTGTTTTCCCCGC
ACCCGCACAGTAGGGCCGCTGTATCAAGTCGGTTACTGAAGAGCCACACA
TACATATACATCAATACAAATCGATGTTGCCTCCCTATAAATGTCTCTCG
ACATGACTCCCGACCTGGTTCCCGGCTGGAATTTCCCGGTCATTTCCTGC
CCATTTCCCGACATATTTCCCGACCATTCCCATCCACCCGAGAAATCGTG
AATTCCCATGCCATCCCATCCCGCCAACCTGATACACTCCCCCCTTACAG
TCCCATTCCAATACCGCGGCCAAGAGATGGGAACATTTTCCCATACCGCC
GGTCGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig15703:853..1260+

>mRNA_H-elongata_contig15703.3716.1 ID=mRNA_H-elongata_contig15703.3716.1|Name=mRNA_H-elongata_contig15703.3716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig15703:853..1260+ (Himanthalia elongata Himel1 dioecious)
ATGAACGTGTGTTTCTTCAAGTGCATCGCGTGTGTGTTTTCCCCGCACCC
GCACAGTAGGGCCGCTGTATCAAGTCGGTTACTGAAGAGCCACACATACA
TATACATCAATACAAATCGATGTTGCCTCCCTATAAATGTCTCTCGACAT
GACTCCCGACCTGGTTCCCGGCTGGAATTTCCCGGTCATTTCCTGCCCAT
TTCCCGACATATTTCCCGACCATTCCCATCCACCCGAGAAATCGTGAATT
CCCATGCCATCCCATCCCGCCAACCTGATACACTCCCCCCTTACAGTCCC
ATTCCAATACCGCGGCCAAGAGATGGGAACATTTTCCCATACCGCCGGTC
GGGAATGAACGTGTGTTTCTTCAAGTGCATCGCGTGTGTGTTTTCCCCGC
ACCCGCACAGTAGGGCCGCTGTATCAAGTCGGTTACTGAAGAGCCACACA
TACATATACATCAATACAAATCGATGTTGCCTCCCTATAAATGTCTCTCG
ACATGACTCCCGACCTGGTTCCCGGCTGGAATTTCCCGGTCATTTCCTGC
CCATTTCCCGACATATTTCCCGACCATTCCCATCCACCCGAGAAATCGTG
AATTCCCATGCCATCCCATCCCGCCAACCTGATACACTCCCCCCTTACAG
TCCCATTCCAATACCGCGGCCAAGAGATGGGAACATTTTCCCATACCGCC
GGTCGGGA
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