mRNA_H-elongata_contig15696.3711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15696.3711.1
Unique NamemRNA_H-elongata_contig15696.3711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A6H5KHD0_9PHAE (BING4CT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHD0_9PHAE)

HSP 1 Score: 770 bits (1988), Expect = 1.940e-274
Identity = 431/559 (77.10%), Postives = 470/559 (84.08%), Query Frame = 1
Query:    1 MSSIGVKRKLPPP------IEFTRHDERKKQRGGRGRGAGGNDIAGQXXXXXXXXXXXXXXXXXXXXXXXXXXKHGG-----ARVRSERAMDQQLGQEVPLPESLHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCHV--WKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSDPVALQAEQATLLEAADARRPKKEAKEKNKTRGRSKV 1638
            MSSIGVKRKLPPP         +R   RK   G RG G  G      XXXXXXXXXXXXXXXXXXXXXXXXXX         ARVR E+AMD+QL           KYVRGPGNST+ + D+KLR GLE+ EK+FE AA+N A AE+LLP+  GFLEAEGME+TFKF QDQ+KEAVD+NTAREM +LSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMD+QMEVQLRETIRDVKTLHNENLVAVAQKKY YIYDNQGAEVHCLR+H+EP RLEFLPYHFLL S+GR GY+KYTDISTGQ VA+MG+KLGACD    LR NPHN +LHAGHHNGVVTMWSPAMG PLVRMLAHPAPITSLAVEK G YMVTSAMDKQT+VWDLRTY+EVH+Y TK PPTDMDIS+RGLLSLGFGCHV  WKDAIA KAKAPYMEHDLPSR+IHR RFRPLQDVLGLGHTEGYSSM++PGAGEPNFD FEANPF+TS+QRRE+EVV+LLEKL PETI LDPSFVG+VD+DPVALQAEQ  ++EAA+ R PK   KEK K RGRSKV
Sbjct:   34 MSSIGVKRKLPPPPGSPDYFASSRGGGRKD--GSRGAGQQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRGEQAMDRQL----------EKYVRGPGNSTEKLTDQKLRSGLERMEKKFEDAAHNTAVAELLLPEDAGFLEAEGMEETFKFGQDQLKEAVDVNTAREMFDLSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDIQMEVQLRETIRDVKTLHNENLVAVAQKKYVYIYDNQGAEVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD---SLRANPHNGVLHAGHHNGVVTMWSPAMGKPLVRMLAHPAPITSLAVEKGGHYMVTSAMDKQTKVWDLRTYKEVHSYLTKTPPTDMDISERGLLSLGFGCHVQVWKDAIATKAKAPYMEHDLPSRLIHRTRFRPLQDVLGLGHTEGYSSMVVPGAGEPNFDTFEANPFQTSKQRRESEVVSLLEKLTPETIGLDPSFVGRVDADPVALQAEQRAIMEAANTRGPKV-VKEKKKMRGRSKV 576          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A835ZC99_9STRA (U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC99_9STRA)

HSP 1 Score: 536 bits (1380), Expect = 2.360e-184
Identity = 271/434 (62.44%), Postives = 327/434 (75.35%), Query Frame = 1
Query:  346 GLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCH--VWKDAIAVKAKAPYMEHDLPSRI-IHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSDPVALQAEQATLLEAADARRPKKEAKEKNKTRGRSKV 1638
            GL++ E+  + A   AA AEILLP+  G++EAEGME T++F Q  +K AVDINTAR +   SLP+LGPY ID+++NGR+L LGGRKGHLAL+DTLRMDV MEVQLR+TIRDV  LH+    AVAQ KY YIYD+QGAEVH LR H +P RL FLPYHFLLASIGR   L+YTD+S G  V++  T LG CD    L  NP NA+LHAGH NGVVT+WSP+MG PLVRMLAH  P++SLAV+ +G YMVT+  D + RVWDLRTY E+H YF +  P+ MDISQRGLL+LGFGCH  VW+DAIA KA+APY+ HD      + R RFRP +D LG GH  GY+++++PGAGEPNFD F ANPFET +QRRE EV ALL+KL PETI LDP+ V  VD+DP AL+ E   L EAADAR PK   + KNK RGR+K+
Sbjct:    6 GLKRAEREAQAAQARAAAAEILLPEEAGYVEAEGMEATYQFKQHDLKAAVDINTARSIFNFSLPELGPYCIDFSRNGRWLTLGGRKGHLALVDTLRMDVVMEVQLRDTIRDVCALHSHAFTAVAQSKYVYIYDDQGAEVHALRQHSQPQRLSFLPYHFLLASIGRGAVLRYTDVSIGTLVSEHNTHLGPCDA---LAQNPRNAVLHAGHSNGVVTLWSPSMGKPLVRMLAHRGPLSSLAVDPTGNYMVTAGHDARVRVWDLRTYTELHHYFARAAPSSMDISQRGLLALGFGCHATVWRDAIATKARAPYLRHDFADGARVERLRFRPYEDALGCGHASGYATLLVPGAGEPNFDTFAANPFETRKQRREGEVKALLDKLGPETIMLDPAAVATVDADPEALRGELRALQEAADAR-PKAAPRAKNKMRGRNKI 435          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: F4NW83_BATDJ (BING4CT domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NW83_BATDJ)

HSP 1 Score: 481 bits (1239), Expect = 2.500e-162
Identity = 232/416 (55.77%), Postives = 304/416 (73.08%), Query Frame = 1
Query:  286 KYVRGPGN-STKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCH--VWKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVD 1524
            KY+R  G    K+++D+KLR  L Q  KRF  AA+ AA +E+LL +  G+LE EGME+T+KF Q ++K+ VD+NT+R+M EL+LP  GPY +DYT NGR LL+GGRKGH+A  D     +  E+QLRET++DVK LHNE + AVAQKKY YIYD  G E+HCLRDH+E   LEFLPYHFLLAS+G AG+LKY D STGQ VA+  TKLG C   V    NP+NAILH GH NG VTMWSP M +PLV+ML H  P++++A++KSG YM TS +D Q +VWD+RTY+ +  Y+T  P + M IS +GLL++ FG H  VWKDA   K K PYM H +    IH   F P +DVLG GH+ G+SS+++PG+GEPNFD FEANP++T +QR+E+EV +L++K+ P+ I LDP+ +G+VD
Sbjct:   35 KYIRSKGLIPIKSIQDRKLRGKLRQATKRFSDAAHQAAQSELLLTEDSGYLEPEGMERTWKFRQSELKKHVDVNTSRKMFELNLPTFGPYMVDYTANGRHLLIGGRKGHVASFDWQTGKLSSEIQLRETVKDVKWLHNETMYAVAQKKYTYIYDKTGMELHCLRDHIEANVLEFLPYHFLLASVGNAGFLKYQDTSTGQLVAEHRTKLGGCATMVQ---NPYNAILHLGHANGTVTMWSPTMSSPLVKMLCHNGPVSAMAIDKSGTYMATSGLDGQMKVWDVRTYKTLQEYYTPRPASSMTISHKGLLAVAFGPHLSVWKDAFKTKQKEPYMTHLVAGSTIHDIHFCPYEDVLGCGHSTGFSSLVVPGSGEPNFDTFEANPYQTRKQRQESEVHSLIDKIQPDMITLDPTIIGRVD 447          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: W7TI68_9STRA (U3 snornp-associated protein utp7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI68_9STRA)

HSP 1 Score: 479 bits (1233), Expect = 5.410e-161
Identity = 230/430 (53.49%), Postives = 312/430 (72.56%), Query Frame = 1
Query:  289 YVRGPG-NSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGM-EKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCHV--WKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSDPVALQAEQATLL 1566
            Y  G G +S   + DK+L+  L++TEKR+  AA  AA  ++LLP   G+LE EG+ ++++K TQ  +K  VD+ T  +   L LP LGPY +D+ +NGR LLLGGR+GH+A++D+LR DV  E+ LR  +RD+  LHNE + AVAQKKY Y+YDNQG E+HCLR H++P RL FLPYH+LLAS+GRAG+LKY D+STG+ VA+  T+ G C   + +R NP NA+LH GH +GVV++WSP+MG  LV ML H  P++ +A+++ GRYM ++ MD + +VWDLR Y+++H Y     P+ +DISQRGLL++GFGCHV  WKDA+A KA +PY+ HD+P   +   RFRP +DVLG+GH  GY SM++PGAGEPNFD+ EANPF++ +QRREAEV  LL+KL PETI LDP  +G VD  P  L  EQ  ++
Sbjct:   64 YENGLGPSSIHKLTDKRLKSRLKRTEKRYREAALEAARFDMLLPHEAGYLEQEGLLDQSWKLTQRDMKRHVDLQTTNQFFHLDLPVLGPYTLDWARNGRHLLLGGRQGHVAVIDSLRTDVTRELHLRTPVRDLAFLHNEGMFAVAQKKYVYLYDNQGLELHCLRGHIDPNRLAFLPYHYLLASVGRAGWLKYQDVSTGKLVAECNTRKGVC---LAIRQNPFNAVLHLGHASGVVSLWSPSMGQSLVSMLCHRGPVSGIAIDREGRYMASAGMDGEVKVWDLRLYKQLHHYTFTTAPSSIDISQRGLLAVGFGCHVTVWKDALAQKAHSPYVRHDIPGNAVDTLRFRPFEDVLGIGHKGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQRDMM 490          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A7R9UD32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD32_9STRA)

HSP 1 Score: 469 bits (1206), Expect = 2.010e-158
Identity = 230/439 (52.39%), Postives = 301/439 (68.56%), Query Frame = 1
Query:  220 VRSERAMDQQLGQEVPLPESLHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGF--GCHVWKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSD 1530
            VR +R        EV           GP   T+ +KDKKL+R ++  E + + AA  AA ++IL  +  G LEAEG+E+T+KF Q  +   +D NT  ++  L L D  PYA+D++++GRFLLLGG++GH+AL+D LR D+  E+ + E +RDV+ LHNE L AVAQ+KY YIYD  G E+HCLR H++P  LEFLPYHFLLAS+GRAG+LKY D+STGQ VA+  TKLG CD       NP  A++H GH NG VT+WSP + TPLVRML H  P+ + AV + G YM TS +D   ++WD+RT+ +VHAY  + PP  + ISQ GLL +GF  G  +WKDAIA KA +PYM HDL   +I R +FRP +D+LG+GH  GYSS+++PG+GEPNFD F ANPF+TS+QRRE EV +LLEKL PETI LD   +G V  D
Sbjct:   13 VRRKRRRLTDASDEVVARAKQRYAAMGPRVGTRRIKDKKLKREMQVVESKIQDAAIRAAESDILNTEVAGSLEAEGLERTYKFKQRDLLPKLDRNTRAKVFNLELRDKAPYAVDFSRSGRFLLLGGKRGHVALVDLLRTDLVFELHVDEEVRDVQCLHNETLCAVAQQKYVYIYDQTGLEIHCLRKHIDPLALEFLPYHFLLASVGRAGFLKYQDVSTGQLVAEWRTKLGPCDVMAQ---NPSTAVMHLGHGNGTVTLWSPTVSTPLVRMLVHRGPVRAAAVSEDGNYMATSGVDGFIKIWDVRTFTQVHAYRVRTPPKSLCISQTGLLGVGFNSGVQIWKDAIATKAVSPYMNHDLEGVVIQRTKFRPYEDILGIGHAAGYSSIVVPGSGEPNFDTFTANPFQTSQQRREQEVKSLLEKLQPETIVLDQESIGAVTVD 448          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A8H8DJ01_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DJ01_9FUNG)

HSP 1 Score: 469 bits (1207), Expect = 5.670e-158
Identity = 228/416 (54.81%), Postives = 298/416 (71.63%), Query Frame = 1
Query:  280 LHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCH--VWKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKV 1521
            L KY RG GNSTK + DKKL+  L + E RF+ AA  AA AE+LL +  GFLEAEGME+T+KFTQ Q+ E +D+ T ++++ L L   GPY +D+T+NGR +L+ GRKGH+A  D     +  E+QL+ET+RD   LHNE   AVAQKKY YIYD++GAE+HCL+ H+E  +++FLPYHFLLAS+G AGYLKY D STGQ VA+  T+LG CD       NP NAI+H GH NG VT+WSP++ TPLV+ML H  P+ ++AV+ SG+YMVTS  D    +WDLRTY+++  YFT  P   + ISQRGLL++ +G +  VWK+    K  +PYM H  P   +    F P +DVLG GH+ G S++++PGAGEPNFDA EANPF+T+RQR+EAEV ALL+K+ PE I LDP+ VGKV
Sbjct:   77 LPKYARGQGNSTKKVTDKKLKANLNKAEVRFDDAAKRAARAEVLLTEEAGFLEAEGMERTYKFTQKQLSEHLDVGTKKKLLNLRLDTFGPYNLDFTRNGRHMLVAGRKGHVATFDWHMGRLASEIQLKETVRDAVWLHNEMYHAVAQKKYVYIYDHRGAEIHCLKKHIEVNKMQFLPYHFLLASVGNAGYLKYQDTSTGQLVAEHRTRLGRCDTMTQ---NPTNAIIHLGHANGTVTLWSPSVSTPLVKMLTHKGPVNAVAVDLSGKYMVTSGFDGNLNIWDLRTYKQLQYYFTPTPAACLSISQRGLLAVAYGPNISVWKEPFRTKQLSPYMSHLQPGTRVEDMHFCPFEDVLGFGHSSGVSTIVVPGAGEPNFDALEANPFQTARQRQEAEVKALLDKIQPEMITLDPNLVGKV 489          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A1U7LT52_NEOID (Putative U3 small nucleolar RNA-associated protein 7 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LT52_NEOID)

HSP 1 Score: 469 bits (1206), Expect = 1.320e-157
Identity = 232/424 (54.72%), Postives = 301/424 (70.99%), Query Frame = 1
Query:  280 LHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCHV--WKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSDPVALQ 1545
            L +Y RG     + +KDKKL+  L+  E+R+  AA +A  AEILL +  G LEAEGMEKT+K TQDQI + VD+ TAR+  +LSL   GPYAIDYT+NGR LLLGGRKGH+A  D  +  +  E+Q++ET+RDVK LH+E+  AVAQKKY YIYD  G EVHCL+ H+E   +EFLPYH+LLA+IG AGYLKY D STGQ VA++ TKLGA         N HNAILH GH NG VT+WSP M TPLV++L+H  P+  LAV++ GRYM T   D Q ++WD+R ++EVH+Y+T  P   ++IS+ GLL +G+G HV  W+DA   K +APYM+H  P   I   +F P +D+LG GH +G+SS++IPG+GE NFDA E NP++ +RQR+E EV  LLEKL PE IAL+P FVG +D    A++
Sbjct:   11 LARYQRGEKVKIRRIKDKKLKSNLKLLEERYRDAASSAVNAEILLQEDPGVLEAEGMEKTWKLTQDQIVKEVDVTTARKRFDLSLSQFGPYAIDYTRNGRHLLLGGRKGHIASFDWQQGKLHSEIQVQETVRDVKWLHDESFYAVAQKKYVYIYDKNGLEVHCLKKHIEATAMEFLPYHYLLATIGNAGYLKYQDTSTGQLVAELRTKLGATSVMAQ---NTHNAILHVGHANGTVTLWSPNMPTPLVKLLSHKGPLRGLAVDREGRYMTTCGADSQLKIWDIRAFKEVHSYYTPTPAQTLNISETGLLGVGWGPHVSVWRDAFKTKQQAPYMQHLNPGSSIVDIKFCPFEDILGFGHEKGFSSLLIPGSGEANFDALELNPYQNNRQRQETEVKTLLEKLKPEMIALEPEFVGDLDKAGAAIR 431          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A0E9N9U4_SAICN (BING4CT domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9N9U4_SAICN)

HSP 1 Score: 469 bits (1206), Expect = 1.970e-157
Identity = 235/451 (52.11%), Postives = 318/451 (70.51%), Query Frame = 1
Query:  259 EVPLPESLH---KYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLG--ACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCH--VWKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDS----DPVALQAEQATLLEAAD 1578
            + P+  SL    KY RG    TK +KDKKLR  +++ E RF  AAY AA +E+LL + EG LEAEGME+T+KF QDQ+++ VD+ TA++  +L LP  GPYAIDYT+NGR LL+GGRKGH+A  D     +  E+QL ET+RDVK LHNE++ AVAQKK+ +IYD  G E+H L++H+E   +EFLPYHFLLA++G AG+LKY D STG  VA++ TKLG  AC     +  N  NA +H GH NG VT+W+P M TPLV++ AH  P+ S+A+++SG+YM T   + + R+WDLR Y+EVH+Y+T  PP+ ++IS RGLL++G+G H  +WKDA+ VK ++PYM H      I  ARF P  DVLG GH+ G+SS+++PG+GEPN+DA+E NP+ET  QRRE EV  L+EK+ P  IALD SF+G +D     D  ALQ ++A   +A +
Sbjct:    8 KAPVDPSLTVMPKYERGERVKTKGIKDKKLRTNMKKVEHRFHDAAYKAADSELLLQEEEGVLEAEGMERTYKFRQDQLRQEVDVATAQKSFDLKLPAFGPYAIDYTRNGRHLLIGGRKGHVASFDWREGKLHSEIQLNETVRDVKWLHNESMYAVAQKKHVFIYDRTGMELHRLKNHIEVQHMEFLPYHFLLATVGNAGWLKYQDTSTGNLVAELRTKLGQPAC-----MTQNQQNAAIHIGHANGTVTLWAPTMSTPLVKLQAHAGPVRSMAIDRSGKYMATGGAEGRLRIWDLRMYKEVHSYYTPTPPSTINISDRGLLAVGWGPHMTIWKDALRVKQQSPYMTHLAAGEHIADARFCPFDDVLGFGHSGGFSSIVVPGSGEPNYDAYELNPYETVDQRRETEVRMLMEKIQPSMIALDTSFIGTLDRTSAPDRRALQEQEAAAKKAEE 453          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A433PUP8_9FUNG (BING4CT domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PUP8_9FUNG)

HSP 1 Score: 471 bits (1211), Expect = 2.090e-157
Identity = 230/443 (51.92%), Postives = 313/443 (70.65%), Query Frame = 1
Query:  202 KHGGARVRSERAMDQQLGQEVPLPESLHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCHV--WKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVD 1524
            K G A+   E    ++L    P    + KY RG     +N+KD+KL+  +++ E++F  AAY AA++E+LL +  G+LEAEGME+T+KFTQ+Q+ + +DIN+A +  +L L D GPY+++YT+NGR +L+GGRKGH+A  D     +  E+ L+ET+RDV+ LHN+ + AVAQKKY YIYD  G EVHCLR H+   RLEFLPYHFLLAS+G  G+LKY D STGQ + ++ TKLG C     +  NP+NAI+H GH NG VT+WSP M TPLV+ML H  P+ ++AV  +G+YM TS +D Q +VWD+RTY+ +  Y+T  P   + ISQ GLL++G+G HV  WKDA   K  +PYM H  PS  +H  +F P  DVLG GH+ G SS++IPG+GEPNFD+ EANPF+T +QR+E+EV +LL+K+ PE I LDP+FVGKVD
Sbjct:   57 KPGNAKXHQE----EELXXXDPNLAKMPKYQRGQPVRVRNIKDRKLKGNIKKQERKFHDAAYKAASSELLLTEEAGYLEAEGMERTYKFTQEQLIQNLDINSANKSFDLKLNDFGPYSLNYTRNGRHMLIGGRKGHVATFDWHTKKLGCELHLKETVRDVQWLHNQTMFAVAQKKYVYIYDRSGLEVHCLRKHVNINRLEFLPYHFLLASVGAGGWLKYQDTSTGQLITELRTKLGNC---AVMTQNPYNAIIHLGHANGTVTLWSPNMSTPLVKMLTHRGPVQAMAVGHTGQYMATSGLDGQLKVWDVRTYKLLQEYYTPTPAGALSISQLGLLAVGWGPHVTVWKDAFKTKQNSPYMTHLQPSTTVHDLQFCPYDDVLGFGHSAGISSLVIPGSGEPNFDSLEANPFQTKKQRQESEVHSLLDKIQPEMITLDPNFVGKVD 492          
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Match: A0A1Y2B421_9FUNG (BING4CT-domain-containing protein n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2B421_9FUNG)

HSP 1 Score: 467 bits (1201), Expect = 2.960e-157
Identity = 231/453 (50.99%), Postives = 320/453 (70.64%), Query Frame = 1
Query:  280 LHKYVRGPGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGMEKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGRKGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQGAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGTKLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPITSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRGLLSLGFGCHV--WKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHTEGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALDPSFVGKVDSDPVALQAEQATLLEAADARRPKKEAKEKNKTRGRS 1632
            ++KY RG     +++ DKK++  +++ E++ + AA+ +  +E+LL +  G+LEAEGMEKT+KFTQ+QIKE VD++T  +M  L L  LGPY  DYT+NGR +L+ G+KGH++  +     +  E+ L ET+RD K LHNE + AVAQKKY YIYD+ G E+HCLR H E  +LEFLPYHFLL +IG AG+LKY D STG +VA+  TKLG CD  V    NP+N I++ GH NG VT+WSP+M +PLV+ML H API S+A++  G YM T+ +D + ++WDLRTY+E+  Y +  P + + ISQ+GLL++GFG HV  WKDA   K K+PYM H  PS  I   +F P +D+LGLGH +G+SS++IPG+GEPNFD+ EANP+ET +QRRE EV  LLEKL PETIAL+P+F+G VD     +  E+  L    +A  P ++ + + +TRG+S
Sbjct:    1 MNKYNRGQSGEIRSINDKKVKGNMKKFERKNKEAAFKSVQSELLLTEEAGYLEAEGMEKTYKFTQEQIKENVDLSTQAKMFNLELDKLGPYTFDYTRNGRDMLIAGKKGHISTFNWKNGKLGCELFLNETVRDAKWLHNETMFAVAQKKYTYIYDSTGMELHCLRKHTEVNKLEFLPYHFLLVTIGNAGWLKYQDTSTGNRVAEFNTKLGRCDCMVQ---NPYNGIINLGHSNGTVTLWSPSMSSPLVKMLCHKAPIQSIAIDNGGYYMATAGLDSRVKIWDLRTYKELQNYLSPTPASSLSISQKGLLAVGFGPHVNIWKDAFKEKQKSPYMSHLQPSCSIKTVKFCPFEDILGLGHDKGFSSIVIPGSGEPNFDSLEANPYETVKQRREKEVHDLLEKLQPETIALNPNFIGSVDRASKDIIEEEKKL--EWEAAHPNEKFEPRKRTRGKS 448          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15696.3711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD0_9PHAE1.940e-27477.10BING4CT domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZC99_9STRA2.360e-18462.44U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonem... [more]
F4NW83_BATDJ2.500e-16255.77BING4CT domain-containing protein n=3 Tax=Batracho... [more]
W7TI68_9STRA5.410e-16153.49U3 snornp-associated protein utp7 n=1 Tax=Nannochl... [more]
A0A7R9UD32_9STRA2.010e-15852.39Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8H8DJ01_9FUNG5.670e-15854.81WD40-repeat-containing domain protein n=1 Tax=Olpi... [more]
A0A1U7LT52_NEOID1.320e-15754.72Putative U3 small nucleolar RNA-associated protein... [more]
A0A0E9N9U4_SAICN1.970e-15752.11BING4CT domain-containing protein n=2 Tax=Saitoell... [more]
A0A433PUP8_9FUNG2.090e-15751.92BING4CT domain-containing protein n=1 Tax=Endogone... [more]
A0A1Y2B421_9FUNG2.960e-15750.99BING4CT-domain-containing protein n=3 Tax=Neocalli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15696contigH-elongata_contig15696:1764..6816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score761.5
Seed ortholog evalue2.6e-217
Seed eggNOG ortholog2880.D7FNZ6
KEGG koko:K14768
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1272@1,KOG1272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU3 snoRNP-associated protein Utp7
Ec32 orthologEc-10_004950.1
Exons10
Model size1647
Cds size1647
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15696.3711.1prot_H-elongata_contig15696.3711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15696 1764..6816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.63697-CDS-H-elongata_contig15696:1763..20811622929926.63697-CDS-H-elongata_contig15696:1763..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 1764..2081 +
1691679210.8914206-CDS-H-elongata_contig15696:1763..20811691679210.8914206-CDS-H-elongata_contig15696:1763..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 1764..2081 +
1622929926.6576846-CDS-H-elongata_contig15696:2415..25831622929926.6576846-CDS-H-elongata_contig15696:2415..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 2416..2583 +
1691679210.9087293-CDS-H-elongata_contig15696:2415..25831691679210.9087293-CDS-H-elongata_contig15696:2415..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 2416..2583 +
1622929926.6733205-CDS-H-elongata_contig15696:3281..34461622929926.6733205-CDS-H-elongata_contig15696:3281..3446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 3282..3446 +
1691679210.925236-CDS-H-elongata_contig15696:3281..34461691679210.925236-CDS-H-elongata_contig15696:3281..3446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 3282..3446 +
1622929926.7071676-CDS-H-elongata_contig15696:3698..38061622929926.7071676-CDS-H-elongata_contig15696:3698..3806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 3699..3806 +
1691679210.9338179-CDS-H-elongata_contig15696:3698..38061691679210.9338179-CDS-H-elongata_contig15696:3698..3806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 3699..3806 +
1622929926.7224295-CDS-H-elongata_contig15696:4114..42841622929926.7224295-CDS-H-elongata_contig15696:4114..4284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 4115..4284 +
1691679210.9422512-CDS-H-elongata_contig15696:4114..42841691679210.9422512-CDS-H-elongata_contig15696:4114..4284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 4115..4284 +
1622929926.7326567-CDS-H-elongata_contig15696:4644..48251622929926.7326567-CDS-H-elongata_contig15696:4644..4825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 4645..4825 +
1691679210.9507883-CDS-H-elongata_contig15696:4644..48251691679210.9507883-CDS-H-elongata_contig15696:4644..4825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 4645..4825 +
1622929926.7449448-CDS-H-elongata_contig15696:5094..52111622929926.7449448-CDS-H-elongata_contig15696:5094..5211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 5095..5211 +
1691679210.959496-CDS-H-elongata_contig15696:5094..52111691679210.959496-CDS-H-elongata_contig15696:5094..5211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 5095..5211 +
1622929926.7566855-CDS-H-elongata_contig15696:5478..56061622929926.7566855-CDS-H-elongata_contig15696:5478..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 5479..5606 +
1691679210.9685588-CDS-H-elongata_contig15696:5478..56061691679210.9685588-CDS-H-elongata_contig15696:5478..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 5479..5606 +
1622929926.768515-CDS-H-elongata_contig15696:6057..62601622929926.768515-CDS-H-elongata_contig15696:6057..6260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 6058..6260 +
1691679210.9775534-CDS-H-elongata_contig15696:6057..62601691679210.9775534-CDS-H-elongata_contig15696:6057..6260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 6058..6260 +
1622929926.7801044-CDS-H-elongata_contig15696:6727..68161622929926.7801044-CDS-H-elongata_contig15696:6727..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 6728..6816 +
1691679210.9867399-CDS-H-elongata_contig15696:6727..68161691679210.9867399-CDS-H-elongata_contig15696:6727..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15696 6728..6816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15696.3711.1

>prot_H-elongata_contig15696.3711.1 ID=prot_H-elongata_contig15696.3711.1|Name=mRNA_H-elongata_contig15696.3711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=549bp
MSSIGVKRKLPPPIEFTRHDERKKQRGGRGRGAGGNDIAGQRGRSRRGLG
GRSSEEGRGRGGRGRGGKHGGARVRSERAMDQQLGQEVPLPESLHKYVRG
PGNSTKNMKDKKLRRGLEQTEKRFETAAYNAATAEILLPDGEGFLEAEGM
EKTFKFTQDQIKEAVDINTAREMIELSLPDLGPYAIDYTKNGRFLLLGGR
KGHLALMDTLRMDVQMEVQLRETIRDVKTLHNENLVAVAQKKYAYIYDNQ
GAEVHCLRDHMEPYRLEFLPYHFLLASIGRAGYLKYTDISTGQQVAQMGT
KLGACDRRVDLRVNPHNAILHAGHHNGVVTMWSPAMGTPLVRMLAHPAPI
TSLAVEKSGRYMVTSAMDKQTRVWDLRTYREVHAYFTKMPPTDMDISQRG
LLSLGFGCHVWKDAIAVKAKAPYMEHDLPSRIIHRARFRPLQDVLGLGHT
EGYSSMIIPGAGEPNFDAFEANPFETSRQRREAEVVALLEKLPPETIALD
PSFVGKVDSDPVALQAEQATLLEAADARRPKKEAKEKNKTRGRSKVRRR
back to top

mRNA from alignment at H-elongata_contig15696:1764..6816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15696.3711.1 ID=mRNA_H-elongata_contig15696.3711.1|Name=mRNA_H-elongata_contig15696.3711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5053bp|location=Sequence derived from alignment at H-elongata_contig15696:1764..6816+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTCAATCGGCGTCAAACGAAAACTACCACCACCTATAGAATTTAC TAGACACGATGAGAGAAAAAAACAAAGAGGAGGGAGAGGAAGAGGAGCGG GAGGTAATGACATCGCTGGTCAGAGGGGGCGCAGTAGACGAGGCTTGGGC GGTAGGTCATCTGAAGAAGGTCGAGGTAGAGGAGGAAGGGGACGGGGTGG CAAGCATGGTGGAGCCCGCGTTCGTAGTGAAAGAGCTATGGATCAACAGC TTGGGCAGGAGGTACCGCTGCCAGAGTCGCTGCACAAATACGTCCGTGGG CCGGGCAACTCTACCAAGGTAAGCGAGCCAGCTCTCTAATGTTGCCTTAC TGCAGCGGATATCCTCGGCCACATGAAATGCCGCAATCCCACCGCCCATG CTTCTGATCTGTTTCTGGGTATAACACAGAGTATGTGTGCATTATCACGG GTTTCAGACACAACGTCCTTTAGCGCCACGGTCTAATGTTTGTCCTGCAT CTAGGAGGAATCAATATAATGCCACAGTGTGCGAAAATGGAAGACCCCCT TCAGGCCTTATACTGAATCACTACCGTTACTCTTCATCTAAAGCCTTTCG TGACCGCAACCTCCCTATAATATATGCCTGGAAACGGTTTTCATCTTCAC AGAATATGAAGGATAAAAAGCTACGCAGGGGCCTCGAGCAAACAGAAAAG AGGTTTGAAACGGCCGCGTACAACGCGGCAACGGCGGAGATCTTGCTCCC TGACGGCGAAGGCTTTCTCGAGGCGGAGGGCATGGAAAAAACGTTTAAGT TCACCCAGGATCAGATAAAGGTATCAAGGGGCACACGTGCGTGGAAATCC CAGATATTTTTATTTTTAAAACCTTGAACTCATTCCAACCCTCCGAACAT CCACACCTTCTTAACGCCGTGAGAGTTGCAGTCCAGGGGACCAACCACGT CAGGTTCGAATGTATAGATTGCTACCTTTGAGCACAAAATCGTAACATTT TGCTTCAAGAGACGTGGGGGTCAGGCACCGGCTTCTCTTGCGGCAACGAA GGGCTCAGCGATAGAACGGTGTACTGAAAGGAGATCGCAAACAAGGCAAT TAAATGGAGTTGTTTTTACAAACCCGCGCTACAGTAGCTACTGTAAACGG ATGCCATTTCGGCGCGTGGTCGCTGAAATGAGGAAAGGGCGTACTGAGAA AAGACTCTACAATAGTACCGCTGCTGGTATCTGGTGCAAGTACTTAAAAG AAGCTTAGGGGTGAAATACGATGGCGCAGGGTGTGCATCGCGTCGTCTTC GGCGCGTTGAGTTTCCAATTGTAAGGATACACTCTTATCGGCAGACGAGA TTTTTTCAGACCCCCACCACTCCTTGAAAGTCGTCCCCTTCCCCCCTCTT CAACACAGCCTCATTAGCGCAGCACCGCCCCCCAGTTGTTGTCCCCAGAT ACGCTCCCTGTACCTATCACTGATGTGCGGAGTATGGTCGACCTTCGATG TCGCGTCACACGTCCCAGGAAGCGGTGGACATAAACACGGCGCGGGAGAT GATCGAACTCTCCCTGCCAGATCTCGGACCTTACGCGATAGATTACACGA AAAACGGCAGATTCTTGCTCCTCGGTGGACGCAAAGGACATCTCGCTTTG ATGGACACGCTAAGGATGGATGTGCAGATGGAGGTGTGTGCGTATGTATA AATGTGTCAATATTTACTTATATATGTGTCTATGTATGTCTAAATGTCTT GCAATTCACGCTCAACGGGGATTCGACGTTCAAGACGAAGGCGCCTTTCA TGTCGCCTTCTTTTAATAAAACGGTAGAGGTGCGCGAATTGGCGGGGACT TGCAAGGGCAACATCTTTTCTACGCGTAGTCGTCTCATCGCTTGTTTTCG GGGCCCTCTGGGGACGTTCCGAAACCTCATGCCAGGTGCAGCTGCGAGAG ACCATTCGAGACGTGAAGACTCTCCACAATGAAAACCTCGTGGCGGTGGC ACAGAAGAAGTACGCCTACATCTACGACAACCAGGGCGCAGAGGTAGGAC ACTTACCCCCGTTGTCAGTTCATGTTAGGATAATTTCCGCTGTCGTGTGC GCGGGTGATTGGCTCCCTCGTTGCCCGCCGGGGCGATCAGATTGTGTCCA AAAGTCGACGCCCAATTTTCCGTCGTGAAGTTTGGGCCCGCGCTCTGCGG TAGGGTTATACGAGCTACTCTTAGACAACCTGTAGAAGTAACTCCTAGTT GTGGATCTCTTGTGAATCAGTCGTCTGTATTGTCGAAAAGGCGAGAAACG TTCGCGATCTGTGGACCCCCCCTTGCCACGCACGTACGGCGCGTCGGACA GGTACACTGCCTCCGAGATCACATGGAGCCCTACAGGCTAGAGTTTCTTC CTTATCATTTTCTTCTCGCAAGCATCGGTCGCGCTGGCTACCTAAAGTAC ACCGACATCAGCACGGGCCAACAGGTGGCCCAAATGGGGACCAAGCTCGG AGCATGCGACAGGCGGGTGGAGTGGGGAGTTGTTTTCGGTTTGATTAACC CCGAATCGCCATATCCTACCCTAAAGCTTGCGTGGACAACGCGCAATGAC ATCGCGGGAGTACGTTCTAGTAGTCATATTTAGTTTGTTTAATCCGAAAC GTTTTTCGCCTCTTCGTTTATGGCTCCACCGTTCATGGTATGGAGAAGGC GTTTGCCGATGCCCACACCGACACTTAAGAGTTTCCGTCCCAGAATTGGG CGCGCGGAAAGGCTTGAGGATGTTTCCTTGGACATGTTCCTCAAGCGGAG TGGAGACCATAAAAAAAAACGCAACTCGCCCCTTCGTTCTCCATCCCTCC CGTCCCGGGCCCGTAAACGTTTCTCGCACAGCCTCCGCGTAAATCCACAC AACGCTATTCTCCATGCCGGTCACCACAACGGAGTCGTCACCATGTGGTC CCCGGCGATGGGGACGCCACTCGTTCGAATGCTCGCGCACCCAGCGCCAA TAACGAGCCTCGCCGTGGAGAAAAGCGGCCGCTACATGGTGACCTCAGCG ATGGACAAGCAGGTGACTCGCGCGCTTGTCCGGGATATCACGGCCTCGTC CATCCAGAGTAGTTGTTTTCAAAGAAAATGTCACCATCCGTGTCTTGGCA GAGACCCTAGACTAGAGATCCACCTGTGTACGATGTTAAGATCGCGATCG AACGGCGACCGAATATTATCTCGATCATCTCGACCATCTCGCAGGAGTTG GCGTTCTGCTGAACCCCGTGTAATCCTCCTCTATTCGCTCTACCTCTCGG GCCCTGTGGCGCTGTCTCTCGCGGCGGACAGACGAGGGTTTGGGACTTAC GCACGTACAGGGAGGTACACGCATACTTCACCAAGATGCCGCCTACGGAC ATGGACATCTCGCAGAGAGGTCTGCTTTCGTTGGGCTTCGGGTGCCACGT TCAGGCGCGTTGAGGTTTTCGACGTTGTCATCAACCACTTGCGTGTGCGT GCTGTCAAAAGCTCTGTCTATATCACAAGAGAGTCAGCGCTTGGGTATAA TCCGCGTTCCTCGTGTTGGGCTCACATCACCGCCCACCCGCGTCCACCCT CTGCGGTAACCCAGATCGACTGCGGCTGTTACCACCTGCCAAGATCGCGC ATCGTTTCGGGGACTACCTCACATCTCCTCTTTGCGCTCGTGTGGCACGC TTCTCAAAAACAAAGGTGTGGAAGGACGCAATCGCTGTGAAAGCCAAGGC CCCCTACATGGAGCACGACCTTCCCTCGAGAATCATCCACCGCGCTCGGT TCCGACCGCTGCAGGATGTGCTCGGGCTCGGGCACACTGAAGGGTGAGAA ATTCGCCGCGCTTTGTGGAACAGGGCAAATAGTAGACACATTAGCACCGA TCGTGCTCGCGGGAGAACTTCCTCCACGCAAAGTGTTTTTTTAATGCGAT TTGTTTGTCACGTACGTAGATGGAGTGATTCGCTTTGCACGTACCTATGA CAACGTGATTTCGGGGAGCAAACCTAATTTTCTCTATTTACACGCGGCGT GCGTGTGTCTAGGCTTGTGAACTTATAGAGCAGCAGAAAATGAACGATGG AGACATCGTATTTCCCCGTGCGCGCTCTTTTTTGTACGAGGAAAATGCGA GTGTAGCAACCTCTCGTGAATCTCCTATTTATAAATCCACTTTCGACCTC TAGCTCCCCCCACCCCCTCTCCCGTGCTAGAACGTGTGTGAACAGAGTCG CGCTTTATCTATCTCGTCCAAACGAATGCGCCCCTCCCCATCAGGTACTC TTCCATGATCATTCCGGGGGCCGGGGAGCCAAACTTCGATGCCTTCGAAG CGAACCCTTTCGAGACGTCCAGGCAGCGGCGAGAAGCCGAGGTGGTTGCG CTGCTGGAAAAGCTTCCCCCAGAGACGATTGCCCTGGATCCGTCGTTCGT CGGGAAAGTGGATTCGGATCCCGTCGCGCTTCAAGCGGAGCAGGCGAGTT CATCGCGGTAACTTCGTGTGCGAGGTTCGCGCTTCGTTTTACTTTGTCTT TTCTTCGTTTTTATTTTATATAGGTTAAGAGGGTACGTCGGCTACCTGGC CAGATGTTTCACTTGCTGCAGATAGGGGCGCGCGCGGGGGGGGGGGGGGG GAGGCGGGGACATTGCTTTACGTTTACCCTGTTCGCGGGGGGGATGCATC CATCCCGGGAGTTTTTGACTGGAAATATGTTTTCGTGGACTTCTGCGCGT ACAGGAGTATCATGGACTTTCCACAGCTTTTTGGGGTGCGTTTGCGTCCA CGTCCACTTCACGTGCGCGCGGGTGTAACAAGTTTTGCATGCTCGCAGCG TAGCGCATGACAGTTCGAAAACACGTCTCCCCTAAATTTGGGAACTCCCC TCAAGTGCTTCGTCGTGGGTCTCTCCCCTTTGTCTCGCACCCCACCGCCA TTGTGAACAGCGAGCGCTCCTGGAAGCGGCCGACGCAAGAAGACCCAAAA AGGAAGCAAAAGAGAAAAACAAGACCAGGGGCAGAAGCAAGGTGAGACGT CGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15696:1764..6816+

>mRNA_H-elongata_contig15696.3711.1 ID=mRNA_H-elongata_contig15696.3711.1|Name=mRNA_H-elongata_contig15696.3711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3294bp|location=Sequence derived from alignment at H-elongata_contig15696:1764..6816+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTCAATCGGCGTCAAACGAAAACTACCACCACCTATAGAATTTAC
TAGACACGATGAGAGAAAAAAACAAAGAGGAGGGAGAGGAAGAGGAGCGG
GAGGTAATGACATCGCTGGTCAGAGGGGGCGCAGTAGACGAGGCTTGGGC
GGTAGGTCATCTGAAGAAGGTCGAGGTAGAGGAGGAAGGGGACGGGGTGG
CAAGCATGGTGGAGCCCGCGTTCGTAGTGAAAGAGCTATGGATCAACAGC
TTGGGCAGGAGGTACCGCTGCCAGAGTCGCTGCACAAATACGTCCGTGGG
CCGGGCAACTCTACCAAGATGTCCTCAATCGGCGTCAAACGAAAACTACC
ACCACCTATAGAATTTACTAGACACGATGAGAGAAAAAAACAAAGAGGAG
GGAGAGGAAGAGGAGCGGGAGGTAATGACATCGCTGGTCAGAGGGGGCGC
AGTAGACGAGGCTTGGGCGGTAGGTCATCTGAAGAAGGTCGAGGTAGAGG
AGGAAGGGGACGGGGTGGCAAGCATGGTGGAGCCCGCGTTCGTAGTGAAA
GAGCTATGGATCAACAGCTTGGGCAGGAGGTACCGCTGCCAGAGTCGCTG
CACAAATACGTCCGTGGGCCGGGCAACTCTACCAAGAATATGAAGGATAA
AAAGCTACGCAGGGGCCTCGAGCAAACAGAAAAGAGGTTTGAAACGGCCG
CGTACAACGCGGCAACGGCGGAGATCTTGCTCCCTGACGGCGAAGGCTTT
CTCGAGGCGGAGGGCATGGAAAAAACGTTTAAGTTCACCCAGGATCAGAT
AAAGAATATGAAGGATAAAAAGCTACGCAGGGGCCTCGAGCAAACAGAAA
AGAGGTTTGAAACGGCCGCGTACAACGCGGCAACGGCGGAGATCTTGCTC
CCTGACGGCGAAGGCTTTCTCGAGGCGGAGGGCATGGAAAAAACGTTTAA
GTTCACCCAGGATCAGATAAAGGAAGCGGTGGACATAAACACGGCGCGGG
AGATGATCGAACTCTCCCTGCCAGATCTCGGACCTTACGCGATAGATTAC
ACGAAAAACGGCAGATTCTTGCTCCTCGGTGGACGCAAAGGACATCTCGC
TTTGATGGACACGCTAAGGATGGATGTGCAGATGGAGGAAGCGGTGGACA
TAAACACGGCGCGGGAGATGATCGAACTCTCCCTGCCAGATCTCGGACCT
TACGCGATAGATTACACGAAAAACGGCAGATTCTTGCTCCTCGGTGGACG
CAAAGGACATCTCGCTTTGATGGACACGCTAAGGATGGATGTGCAGATGG
AGGTGCAGCTGCGAGAGACCATTCGAGACGTGAAGACTCTCCACAATGAA
AACCTCGTGGCGGTGGCACAGAAGAAGTACGCCTACATCTACGACAACCA
GGGCGCAGAGGTGCAGCTGCGAGAGACCATTCGAGACGTGAAGACTCTCC
ACAATGAAAACCTCGTGGCGGTGGCACAGAAGAAGTACGCCTACATCTAC
GACAACCAGGGCGCAGAGGTACACTGCCTCCGAGATCACATGGAGCCCTA
CAGGCTAGAGTTTCTTCCTTATCATTTTCTTCTCGCAAGCATCGGTCGCG
CTGGCTACCTAAAGTACACCGACATCAGCACGGGCCAACAGGTGGCCCAA
ATGGGGACCAAGCTCGGAGCATGCGACAGGCGGGTGGAGTACACTGCCTC
CGAGATCACATGGAGCCCTACAGGCTAGAGTTTCTTCCTTATCATTTTCT
TCTCGCAAGCATCGGTCGCGCTGGCTACCTAAAGTACACCGACATCAGCA
CGGGCCAACAGGTGGCCCAAATGGGGACCAAGCTCGGAGCATGCGACAGG
CGGGTGGACCTCCGCGTAAATCCACACAACGCTATTCTCCATGCCGGTCA
CCACAACGGAGTCGTCACCATGTGGTCCCCGGCGATGGGGACGCCACTCG
TTCGAATGCTCGCGCACCCAGCGCCAATAACGAGCCTCGCCGTGGAGAAA
AGCGGCCGCTACATGGTGACCTCAGCGATGGACAAGCAGCCTCCGCGTAA
ATCCACACAACGCTATTCTCCATGCCGGTCACCACAACGGAGTCGTCACC
ATGTGGTCCCCGGCGATGGGGACGCCACTCGTTCGAATGCTCGCGCACCC
AGCGCCAATAACGAGCCTCGCCGTGGAGAAAAGCGGCCGCTACATGGTGA
CCTCAGCGATGGACAAGCAGACGAGGGTTTGGGACTTACGCACGTACAGG
GAGGTACACGCATACTTCACCAAGATGCCGCCTACGGACATGGACATCTC
GCAGAGAGGTCTGCTTTCGTTGGGCTTCGGGTGCCACACGAGGGTTTGGG
ACTTACGCACGTACAGGGAGGTACACGCATACTTCACCAAGATGCCGCCT
ACGGACATGGACATCTCGCAGAGAGGTCTGCTTTCGTTGGGCTTCGGGTG
CCACGTGTGGAAGGACGCAATCGCTGTGAAAGCCAAGGCCCCCTACATGG
AGCACGACCTTCCCTCGAGAATCATCCACCGCGCTCGGTTCCGACCGCTG
CAGGATGTGCTCGGGCTCGGGCACACTGAAGGGTGTGGAAGGACGCAATC
GCTGTGAAAGCCAAGGCCCCCTACATGGAGCACGACCTTCCCTCGAGAAT
CATCCACCGCGCTCGGTTCCGACCGCTGCAGGATGTGCTCGGGCTCGGGC
ACACTGAAGGGTACTCTTCCATGATCATTCCGGGGGCCGGGGAGCCAAAC
TTCGATGCCTTCGAAGCGAACCCTTTCGAGACGTCCAGGCAGCGGCGAGA
AGCCGAGGTGGTTGCGCTGCTGGAAAAGCTTCCCCCAGAGACGATTGCCC
TGGATCCGTCGTTCGTCGGGAAAGTGGATTCGGATCCCGTCGCGCTTCAA
GCGGAGCAGGCGAGTACTCTTCCATGATCATTCCGGGGGCCGGGGAGCCA
AACTTCGATGCCTTCGAAGCGAACCCTTTCGAGACGTCCAGGCAGCGGCG
AGAAGCCGAGGTGGTTGCGCTGCTGGAAAAGCTTCCCCCAGAGACGATTG
CCCTGGATCCGTCGTTCGTCGGGAAAGTGGATTCGGATCCCGTCGCGCTT
CAAGCGGAGCAGGCGACGCTCCTGGAAGCGGCCGACGCAAGAAGACCCAA
AAAGGAAGCAAAAGAGAAAAACAAGACCAGGGGCAGAAGCAAGGTGAGAC
GTCGCCGCTCCTGGAAGCGGCCGACGCAAGAAGACCCAAAAAGGAAGCAA
AAGAGAAAAACAAGACCAGGGGCAGAAGCAAGGTGAGACGTCGC
back to top