prot_H-elongata_contig156830.3707.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156830.3707.1
Unique Nameprot_H-elongata_contig156830.3707.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.290e-15
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAVEKASSSG---------GGGEGVKATA--AVGTALLMWFFEDQVRAR 71
            MALEALKDLFITNLLP  R+LVPFE+RPL Q   +V +  + G         GGG GV +    A G ALLMW++EDQ+  R
Sbjct:  312 MALEALKDLFITNLLPDSRKLVPFETRPLLQALASVTEEGNKGQGGGGDSVPGGGRGVNSPGGKAAGKALLMWYYEDQILNR 393          
BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-12
Identity = 43/74 (58.11%), Postives = 45/74 (60.81%), Query Frame = 0
Query:    1 MALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAV--EKASSSGGGGEGVKATA---------AVGTALLMWF 63
            MALEALKDLFITNLLP  R+LVPFESRPL Q   +V  E     GGGGE V             A G ALLMWF
Sbjct:  101 MALEALKDLFITNLLPDSRKLVPFESRPLLQALASVTEEGNKGQGGGGESVPEGGRGVNGPRGKAAGKALLMWF 174          
BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.830e-6
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 0
Query:    1 MALEALKDLFITNLLPSGRRLVPFESRPLFQVF----NAVEKASSSGGGGEGVKATAAVGTALLMWFFEDQVRAR 71
            MA EALKDLFI++LLP  RRLVPF  RPL Q      N  E+A+ +                LLMW+FE ++  R
Sbjct:  284 MAQEALKDLFISDLLPDERRLVPFRERPLLQFEEWAPNFKEQAAKT----------------LLMWYFEGELLRR 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI2.290e-1553.66CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE2.200e-1258.11Reverse transcriptase domain-containing protein n=... [more]
A0A835ZC94_9STRA2.830e-644.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156830contigH-elongata_contig156830:955..1167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156830.3707.1mRNA_H-elongata_contig156830.3707.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156830 955..1176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156830.3707.1 ID=prot_H-elongata_contig156830.3707.1|Name=mRNA_H-elongata_contig156830.3707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAVEKASSSGGGGEGVK
ATAAVGTALLMWFFEDQVRAR
back to top