mRNA_H-elongata_contig156793.3703.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 210 bits (534), Expect = 3.770e-61 Identity = 142/259 (54.83%), Postives = 174/259 (67.18%), Query Frame = 3
Query: 249 FSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIALLSRKDKSSTXXXXXXXXXXXXXXXXXXXXXXXXXSRVGGFMAA-------ARLAGRAPTQQVGRGADDSTTSLIINSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSSLARRMLVIPATQTESKRLFSCAGNIVTKNRNKLASTAVELLVLLRLAWGVVD*WGASKAAATKATRG 1004
F N WG G NIL Y E RRQP GFKP QV+ATAL+PRTK+ YGV ++E A+VWK + +EAVKIA+ +R ++S XXXXXXXXXXXXXXXXX A+ G A T Q+ GAD S LI +SVR E+ A++ + G+K+ EE K G + +YLDPL++WRVR AD HL++LARR+L IPATQ ES+RLFSCAGNIVTKNRN LA T VELLVLLR +W +V+ W S A A RG
Sbjct: 51 FINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEG---AKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAA-AKRG 305
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 162 bits (410), Expect = 9.000e-41 Identity = 108/284 (38.03%), Postives = 145/284 (51.06%), Query Frame = 3
Query: 12 NWAVLEIINPILEPFMQTQAMLEDRKCVTGSLVV*FIHDLRENFEDAIEDFDNLDASD-DAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIALLS-RKDKSSTXXXXXXXXXXXXXXXXXXXXXXXXXSRVGGFMAAARLAGRAPTQQVGRGADDSTTSLIINSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSSLARRMLVIPATQTESKRL 857
+W VL +I PIL PFMQ Q LE K VTGS+ V I +LR E AI D D A A +V P AL+ F N WG GS+IL Y E RRQP+GFK +QV ATA++PR K YG++ EHA+VW+ + +AV IA D ++T +R+ F AAA A G D + + V EV ++Q PG+ I G G +Y DPL++WR R + HL++LARR+L IP++Q S+R+
Sbjct: 269 DWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKK---VYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 145 bits (365), Expect = 8.770e-34 Identity = 129/351 (36.75%), Postives = 183/351 (52.14%), Query Frame = 3
Query: 3 KAANWAVLEIINPILEPFMQTQAMLEDRKCVTGSLVV*FIHDLRENFEDAIEDFDNLDASDDAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIALLSRKDKSSTXXXXXXXXXXXXXXXXXXXXXXXXXSRVGGF-------------MAAARLAGRAPT--------------------------QQVGRGADDSTTSLIINSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSSLARRMLVIPATQTESKRLFSCAGNIVTKNRNKLASTAVELLVLLR 938
K +W VL+++ +L+PFM Q LE K VT LV +I DL++ ++A+E ++ + A V C AL S WG +++L Y E RRQPRGFK EQV+ATAL PR+K YG+++ EH++VW EAVK+A+ ++ + XXXXXXXXXXXXXXXXXXXXXXXXX +A + P QQ + + + + EV+A++ PG+ ++ E K PLE+WRV+ + L+SLARR+L IPA Q +S+R+FS AG +VTK R ++ V L+V LR
Sbjct: 195 KEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRG----KPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 134 bits (338), Expect = 2.480e-30 Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 3
Query: 45 LEPFMQTQAMLEDRKC----VTGSLVV*FIHDLRENFEDAIEDFDNLDASDDAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIALLSRKDKSS 470
L+ F++T +++++ VTGSLVV FI+DLR + EDAI+D L DA + TA A+V PCI AL + + WG G NIL Y E RRQP GFKP V+ATAL+PRTK+PYGV ++E A+VWK + +EAVKIA+ +R ++S
Sbjct: 178 LKQFVKTYLGVDNKRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENS 323
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.700e-27 Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 3
Query: 12 NWAVLEIINPILEPFMQTQAMLEDRKCVTGSLVV*FIHDLRENFEDAIEDFDNLDASDDAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIAL 446
+W VL+++ P+L PFM Q LE K VT SLV +I DLR+ ++AIE ++ + A + C AL S W G+++L Y E RRQPRGFK +QV+ATAL+PR+K YG+++ EH++VW+ + EAVK+A+
Sbjct: 170 DWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAI 314
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.800e-20 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 3
Query: 159 DFDNLDASDDAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKE-AVKIALLSRKDKSS 470
D L DA + TA A+V PCI AL F N WG G NIL Y E RRQP GFKP QV+ATAL+PRTK+ +GV ++E A+VWK + +E AVKIA+ +R ++S
Sbjct: 143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENS 247
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.310e-17 Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 3
Query: 777 TADSLHLSSLARRMLVIPATQTESKRLFSCAGNIVTKNRNKLASTAVELLVLLRLAWGVVD*WGASKAAATKATRG 1004
+ D HL++LARR+L IPATQ +S+RLFSCAGNIVTKNRN LA T VELLVLLR +W +V+ W S A A RG
Sbjct: 151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAA-AMRG 225
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 7.000e-14 Identity = 50/155 (32.26%), Postives = 85/155 (54.84%), Query Frame = 3
Query: 3 KAANWAVLEIINPILEPFMQTQAMLEDRKCVTGSLVV*FIHDLRENFEDAIEDF-------DNLDASDDAEITTA*ASVKPCITALYAVFSNLWGYGSNILTYAERNRRQPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHKEAVKIAL 446
K +W VL+++ P+ +PF+ +Q E K VT SLV+ +I DLR+ ++A+E +++ A ++ A V+P + +PRGFK +QV+ATAL+PR+K YG+++ EH++VW+ + EAVK+A+
Sbjct: 239 KEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVFFAPKHVRPTSVIV-----------------------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAI 370
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: UPI001C9A9669 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A9669) HSP 1 Score: 68.9 bits (167), Expect = 6.550e-9 Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 3
Query: 651 NSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSSLARRMLVIPATQTESKRLFSCAGNIVTKNRNKLASTAVELLVLL 935
N V ++E Y P ++ + L+P E+W+ RT +S +A++ L IPAT S+R FSCAGNIVTK RN+L V LV L
Sbjct: 394 NDVYIQIETYMTEPQLRFD-------------LNPFEWWKARTNKYPAISEVAKKYLTIPATSAMSERCFSCAGNIVTKKRNRLLPENVNTLVFL 475
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Match: UPI0008114DE5 (zinc finger BED domain-containing protein 1-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008114DE5) HSP 1 Score: 65.1 bits (157), Expect = 8.990e-8 Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 3
Query: 750 DPLEFWRVRTADSLHLSSLARRMLVIPATQTESKRLFSCAGNIVTKNRNKLASTAVELLVLL 935
DPLE+W+ RT+D HL LA R L IPAT +ES+R+FS AG +++ R +L V +L+ +
Sbjct: 332 DPLEYWKTRTSDMRHLQILALRYLCIPATSSESERMFSKAGAVISDRRTRLKEKNVNMLLFI 393 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156793.3703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156793.3703.1 >prot_H-elongata_contig156793.3703.1 ID=prot_H-elongata_contig156793.3703.1|Name=mRNA_H-elongata_contig156793.3703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MPYGVKDNEHANVWKRLHKEAVKIALLSRKDKSSTGGSSQQLATAAPSGAback to top mRNA from alignment at H-elongata_contig156793:84..1403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156793.3703.1 ID=mRNA_H-elongata_contig156793.3703.1|Name=mRNA_H-elongata_contig156793.3703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1320bp|location=Sequence derived from alignment at H-elongata_contig156793:84..1403+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156793:84..1403+ >mRNA_H-elongata_contig156793.3703.1 ID=mRNA_H-elongata_contig156793.3703.1|Name=mRNA_H-elongata_contig156793.3703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig156793:84..1403+ (Himanthalia elongata Himel1 dioecious)back to top |