prot_H-elongata_contig156779.3701.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156779.3701.1
Unique Nameprot_H-elongata_contig156779.3701.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length139
Homology
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BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.200e-45
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 0 
Query:    1 QVPTLTRLG-ELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGIARYDQEADGARRWVEGAWVLGALGAMCLFIGASVPGDGEDSFSLQGIAHAAFFVAAGLGMIGQAICTVRAILKARCVVV 129
            ++PTLT+LG   +PVG  F AG+ LAAV A+PLFWCV+LAHHQRLQARTG+ARYD EA+GA RWV GAW+ GALGAM ++  ASVPG+   SFS QG+ H     +A  G++GQA+CT  A+ KAR V V
Sbjct:   66 RIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFV 195
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BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Match: A0A835YPN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.600e-14
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0 
Query:    1 QVPTLTRLGELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGIARYDQEADGARRWVEGAWVLGALGAMCLFIGASVP 85
            ++PT++RLG   P   VF  G+HL A+  + L W VRLAH QRL+ARTG+ +YD     ARR  + A  +G   +   F+  SVP
Sbjct:   62 RLPTVSRLGAYPPGCYVFAGGMHLGAIVFMLLVWAVRLAHTQRLRARTGLEKYDSRGAAARRCADAACAVGTAFSALWFLAGSVP 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE4_ECTSI5.200e-4560.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN4_9STRA6.600e-1443.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..122
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..66
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 100..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156779contigH-elongata_contig156779:15..843 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156779.3701.1mRNA_H-elongata_contig156779.3701.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156779 15..843 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156779.3701.1 ID=prot_H-elongata_contig156779.3701.1|Name=mRNA_H-elongata_contig156779.3701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
QVPTLTRLGELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGI
ARYDQEADGARRWVEGAWVLGALGAMCLFIGASVPGDGEDSFSLQGIAHA
AFFVAAGLGMIGQAICTVRAILKARCVVVLFLFLSLSC*
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