mRNA_H-elongata_contig156761.3700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156761.3700.1
Unique NamemRNA_H-elongata_contig156761.3700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.730e-76
Identity = 112/132 (84.85%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 RQVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRCKGR 396
            RQVYDALLQYKA+HGNLHVPVAF VP  PPWH+DLWGLALGQRVLDIRA HRYIRNDP+R+R+LNE GF WTDA K+SY NVV ALKAY K+KGR+ SVPSSFVVPSFLPWPQSCWGLRLGTALVDIR KGR
Sbjct:  328 RQVYDALLQYKAEHGNLHVPVAFSVPSSPPWHQDLWGLALGQRVLDIRATHRYIRNDPERIRLLNEVGFRWTDATKASYGNVVRALKAYRKIKGRDLSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRSKGR 459          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S3YVR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YVR9_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 3.110e-25
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    4 QVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIR 384
            +V+++L++YK  +GNL +P  F VP    W   LW   LGQRV +IR+   Y++NDP R+ MLN+ GF+W D  +  +   V ALK Y ++ G   SV  +F VP   PWP+  WG+ LG  + +IR
Sbjct:   69 KVWESLVRYKKLYGNLVIPHGFVVPQNDQWPSHLWDFGLGQRVRNIRSIGLYVKNDPFRIEMLNDLGFVWDDN-EWRFKQTVQALKTYKRIYGN-LSVNVAFTVPEEEPWPEMTWGVNLGERVHNIR 193          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S3QCY2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCY2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.100e-23
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 1
Query:   10 YDALL----QYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKS-------SYANVVGALKAYHKV--KGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRCK 390
            ++ALL     YKA +G+L VP  F VP  PPW E  WGL LGQRV  IR+  +Y+ +D +R ++L++ GFLW   A S       ++  +  AL  Y K        +VP++F+VP++ PWP++  G+ LG  +  +R K
Sbjct:  126 WNALLASFQMYKAAYGDLKVPSRFVVPSMPPWPESGWGLKLGQRVASIRSTGKYVDDDDERRKVLDDMGFLWRLRAPSPDKKVDVTFEQIYDALVTYRKEIQTDESLTVPTNFIVPNYDPWPEASRGMPLGKKIPTVRSK 265          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S2Y6U0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6U0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.170e-20
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 ALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAA----KSSYANVVGA------------LKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVD 378
            A   YKA +GNL VP  F VP+  PW +  WG+ LG+ V  IR   +YI+ DP R ++L+E GF+W   A    K S     GA            L  Y K+      VP+SFVVP+  PWP S   L LG  +  
Sbjct:    7 AFQMYKAAYGNLKVPQRFMVPNMKPWPKAAWGMRLGKVVGSIRGTGKYIQGDPKRRQVLDELGFIWQVRASPTEKGSATTKAGANEFVSLEQMYTALAIYSKLNDGSIIVPTSFVVPTTGPWPDSVKELPLGRQMAS 143          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A485K2Z3_9STRA (Aste57867_585 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2Z3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.750e-20
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   13 DALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPS-FLPWPQSCWGLRLGTALVDIRCKG 393
             AL  YKA H NL VP  + VP   PW +DLWG  LG  V +IR+R   +   PDR   L    F+W D+ + ++   V AL+ Y ++ G    VP  F VP     WP +CW L+LG A+ D+RC+G
Sbjct:   92 QALRTYKALHDNLLVPYEYTVPAAAPWAKDLWGCKLGVAVTNIRSRVDLLT--PDRKAALEALDFVW-DSHELTFDIKVLALQTYKRLHGH-VHVPFEFKVPDGSREWPATCWKLKLGRAVHDLRCRG 215          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A6H5L2W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.810e-20
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    7 VYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQR--VLDIRARHRY-IRNDPDRVRM-------LNEAGFLW 213
            VYDALLQYKA+HGNLHVPVAFRVP  PPWH+DLWGLALGQR     +     Y +R +PDR+         +   GF W
Sbjct:    8 VYDALLQYKAEHGNLHVPVAFRVPSSPPWHQDLWGLALGQRCSAFCVAGSMLYGLRRNPDRLNRHPEIRAEITALGFSW 86          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A6A4YZE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZE8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.890e-19
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
            AL  YK+ + NL VP  F VP     W  DLWG  LG  V +IR+R   +   PDR   L+  GF+W D+ + ++   V AL  Y ++ G    VP  F VP   P WP +CW L+LG A+ D+RC+G
Sbjct:   85 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 208          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S2JR57_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR57_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.180e-19
Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    4 QVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTD--AAKSS-YANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
            Q+YDAL+QYK + GNL VP+ F VPD   W +   GL LG ++  IR++  Y++N P++ + L E G       AA S+ Y  V  AL  Y ++ G +  VP  FVVP     W +  WGLRLG  +  IR +G
Sbjct:  188 QIYDALVQYKKEFGNLDVPITFSVPDIESWPQHSRGLPLGSKLATIRSK-TYLKNRPEQRKKLEELGLQLDGKVAANSARYHLVYDALVRYKEIYG-DLLVPQPFVVPKEAEDWNEPFWGLRLGARVNAIRSQG 319          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: W4H196_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H196_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.460e-18
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
            AL  YK+ + NL VP  F VP     W  DLWG  LG  V +IR+R   +   PDR   L+  GF+W D+ + ++   V AL  Y ++ G    VP  F VP   P WP +CW L+LG A+ D+RC+G
Sbjct:   95 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 218          
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A418DX94_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DX94_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.170e-18
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
            AL  YK+ + NL VP  F VP     W  DLWG  LG  V +IR+R   +   PDR   L+  GF+W D+ + ++   V AL  Y ++ G    VP  F VP   P WP +CW L+LG A+ D+RC+G
Sbjct:   85 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G5K9_ECTSI6.730e-7684.85HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3YVR9_9EUKA3.110e-2541.73Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S3QCY2_9STRA4.100e-2338.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2Y6U0_9STRA2.170e-2038.69Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A485K2Z3_9STRA4.750e-2041.41Aste57867_585 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A6H5L2W1_9PHAE5.810e-2056.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4YZE8_9STRA6.890e-1941.41Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S2JR57_9STRA8.180e-1941.04Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W4H196_9STRA2.460e-1841.41Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A418DX94_9STRA5.170e-1841.41Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156761contigH-elongata_contig156761:395..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue1.4e-63
Seed eggNOG ortholog2880.D7G5K9
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156761.3700.1prot_H-elongata_contig156761.3700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156761 395..1376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.2621207-CDS-H-elongata_contig156761:394..5291622929925.2621207-CDS-H-elongata_contig156761:394..529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 395..529 -
1691679210.4487448-CDS-H-elongata_contig156761:394..5291691679210.4487448-CDS-H-elongata_contig156761:394..529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 395..529 -
1622929925.2772467-CDS-H-elongata_contig156761:839..9721622929925.2772467-CDS-H-elongata_contig156761:839..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 840..972 -
1691679210.4619184-CDS-H-elongata_contig156761:839..9721691679210.4619184-CDS-H-elongata_contig156761:839..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 840..972 -
1622929925.2884457-CDS-H-elongata_contig156761:1248..13761622929925.2884457-CDS-H-elongata_contig156761:1248..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 1249..1376 -
1691679210.4713876-CDS-H-elongata_contig156761:1248..13761691679210.4713876-CDS-H-elongata_contig156761:1248..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156761 1249..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156761.3700.1

>prot_H-elongata_contig156761.3700.1 ID=prot_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
RQVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRAR
HRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVP
SSFVVPSFLPWPQSCWGLRLGTALVDIRCKGR
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mRNA from alignment at H-elongata_contig156761:395..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156761.3700.1 ID=mRNA_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig156761:395..1376- (Himanthalia elongata Himel1 dioecious)
CGGCAGGTTTACGATGCCCTGCTGCAATACAAAGCTCAGCACGGCAACTT GCACGTTCCGGTGGCCTTCCGGGTGCCGGATTGCCCTCCTTGGCATGAGG ACCTCTGGGGTCTAGCTCTGGGGCAAAGGTGAGGGGATTTGCTCCTTTGG TTCTCATTGTTATTTTGTATAGAGGTGTTTTCGTGGCGCCTGCCCCCCCC CAACCTCCCGGACTTTTCCCATATCACACCCGATCCTTCATTTAGAACGG AAGTCACGCTCTCGCCGTGCCCTGCGTCTCATGTCACCCCCTATATCTAT CTCAAGCCATCCTGCTCCTCCTCTATTCCCTTTCCCCTCTTTATTTAAAA ATACGCTGTTTATTACGCGCGGTGGGGTCGTCTCATTTTTATCCCTCTCG CAAGAGTGCTGGACATTCGAGCGCGTCACCGTTATATCCGAAACGATCCT GACCGCGTCCGGATGCTGAACGAGGCCGGGTTCCTCTGGACGGACGCTGC GAAGAGCAGCTACGCCAACGTCGTCGGGGCTCTGAAGGTGCTCCGGTCCG CCCTCGAATGTTTGCTTTATATATATATATATATATATATATATATATAT ATATGGGATTTTCATGCCATAAAGGCGTTTTCTCTTTGTTGGGATCTGGC TTTGAGTCTGCATGAGTCGATACCGTTCAGATCTAGACGACCCGAGGTGG ACAAGACGCAGCAAGCCCAAGAAACGTTTGGTTCGCCCGAGTTGTTTCAT AAATATTCACGCCAAGAGAGCTGCAGGGTTCTCCTTGATTTCAGTTTGGA AAAGCCACGAGTTTTCTTGCCCCTCGTTCGCTCGTTGCCATTTCCAGGCG TACCACAAGGTGAAGGGTCGAGAATTTTCAGTGCCGAGCTCCTTCGTTGT CCCATCCTTCTTGCCCTGGCCACAGTCGTGCTGGGGTCTGCGGCTGGGGA CGGCGCTCGTAGATATCCGCTGCAAGGGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig156761:395..1376-

>mRNA_H-elongata_contig156761.3700.1 ID=mRNA_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig156761:395..1376- (Himanthalia elongata Himel1 dioecious)
CGGCAGGTTTACGATGCCCTGCTGCAATACAAAGCTCAGCACGGCAACTT
GCACGTTCCGGTGGCCTTCCGGGTGCCGGATTGCCCTCCTTGGCATGAGG
ACCTCTGGGGTCTAGCTCTGGGGCAAAGCGGCAGGTTTACGATGCCCTGC
TGCAATACAAAGCTCAGCACGGCAACTTGCACGTTCCGGTGGCCTTCCGG
GTGCCGGATTGCCCTCCTTGGCATGAGGACCTCTGGGGTCTAGCTCTGGG
GCAAAGAGTGCTGGACATTCGAGCGCGTCACCGTTATATCCGAAACGATC
CTGACCGCGTCCGGATGCTGAACGAGGCCGGGTTCCTCTGGACGGACGCT
GCGAAGAGCAGCTACGCCAACGTCGTCGGGGCTCTGAAGAGTGCTGGACA
TTCGAGCGCGTCACCGTTATATCCGAAACGATCCTGACCGCGTCCGGATG
CTGAACGAGGCCGGGTTCCTCTGGACGGACGCTGCGAAGAGCAGCTACGC
CAACGTCGTCGGGGCTCTGAAGGCGTACCACAAGGTGAAGGGTCGAGAAT
TTTCAGTGCCGAGCTCCTTCGTTGTCCCATCCTTCTTGCCCTGGCCACAG
TCGTGCTGGGGTCTGCGGCTGGGGACGGCGCTCGTAGATATCCGCTGCAA
GGGCAGGGCGTACCACAAGGTGAAGGGTCGAGAATTTTCAGTGCCGAGCT
CCTTCGTTGTCCCATCCTTCTTGCCCTGGCCACAGTCGTGCTGGGGTCTG
CGGCTGGGGACGGCGCTCGTAGATATCCGCTGCAAGGGCAGG
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