mRNA_H-elongata_contig156761.3700.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI) HSP 1 Score: 247 bits (631), Expect = 6.730e-76 Identity = 112/132 (84.85%), Postives = 120/132 (90.91%), Query Frame = 1
Query: 1 RQVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRCKGR 396
RQVYDALLQYKA+HGNLHVPVAF VP PPWH+DLWGLALGQRVLDIRA HRYIRNDP+R+R+LNE GF WTDA K+SY NVV ALKAY K+KGR+ SVPSSFVVPSFLPWPQSCWGLRLGTALVDIR KGR
Sbjct: 328 RQVYDALLQYKAEHGNLHVPVAFSVPSSPPWHQDLWGLALGQRVLDIRATHRYIRNDPERIRLLNEVGFRWTDATKASYGNVVRALKAYRKIKGRDLSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRSKGR 459
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S3YVR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YVR9_9EUKA) HSP 1 Score: 108 bits (271), Expect = 3.110e-25 Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 4 QVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIR 384
+V+++L++YK +GNL +P F VP W LW LGQRV +IR+ Y++NDP R+ MLN+ GF+W D + + V ALK Y ++ G SV +F VP PWP+ WG+ LG + +IR
Sbjct: 69 KVWESLVRYKKLYGNLVIPHGFVVPQNDQWPSHLWDFGLGQRVRNIRSIGLYVKNDPFRIEMLNDLGFVWDDN-EWRFKQTVQALKTYKRIYGN-LSVNVAFTVPEEEPWPEMTWGVNLGERVHNIR 193
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S3QCY2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCY2_9STRA) HSP 1 Score: 103 bits (257), Expect = 4.100e-23 Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 1
Query: 10 YDALL----QYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKS-------SYANVVGALKAYHKV--KGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVDIRCK 390
++ALL YKA +G+L VP F VP PPW E WGL LGQRV IR+ +Y+ +D +R ++L++ GFLW A S ++ + AL Y K +VP++F+VP++ PWP++ G+ LG + +R K
Sbjct: 126 WNALLASFQMYKAAYGDLKVPSRFVVPSMPPWPESGWGLKLGQRVASIRSTGKYVDDDDERRKVLDDMGFLWRLRAPSPDKKVDVTFEQIYDALVTYRKEIQTDESLTVPTNFIVPNYDPWPEASRGMPLGKKIPTVRSK 265
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S2Y6U0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6U0_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.170e-20 Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 16 ALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAA----KSSYANVVGA------------LKAYHKVKGREFSVPSSFVVPSFLPWPQSCWGLRLGTALVD 378
A YKA +GNL VP F VP+ PW + WG+ LG+ V IR +YI+ DP R ++L+E GF+W A K S GA L Y K+ VP+SFVVP+ PWP S L LG +
Sbjct: 7 AFQMYKAAYGNLKVPQRFMVPNMKPWPKAAWGMRLGKVVGSIRGTGKYIQGDPKRRQVLDELGFIWQVRASPTEKGSATTKAGANEFVSLEQMYTALAIYSKLNDGSIIVPTSFVVPTTGPWPDSVKELPLGRQMAS 143
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A485K2Z3_9STRA (Aste57867_585 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2Z3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 4.750e-20 Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 13 DALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPS-FLPWPQSCWGLRLGTALVDIRCKG 393
AL YKA H NL VP + VP PW +DLWG LG V +IR+R + PDR L F+W D+ + ++ V AL+ Y ++ G VP F VP WP +CW L+LG A+ D+RC+G
Sbjct: 92 QALRTYKALHDNLLVPYEYTVPAAAPWAKDLWGCKLGVAVTNIRSRVDLLT--PDRKAALEALDFVW-DSHELTFDIKVLALQTYKRLHGH-VHVPFEFKVPDGSREWPATCWKLKLGRAVHDLRCRG 215
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A6H5L2W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W1_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.810e-20 Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 7 VYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQR--VLDIRARHRY-IRNDPDRVRM-------LNEAGFLW 213
VYDALLQYKA+HGNLHVPVAFRVP PPWH+DLWGLALGQR + Y +R +PDR+ + GF W
Sbjct: 8 VYDALLQYKAEHGNLHVPVAFRVPSSPPWHQDLWGLALGQRCSAFCVAGSMLYGLRRNPDRLNRHPEIRAEITALGFSW 86
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A6A4YZE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZE8_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 6.890e-19 Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
AL YK+ + NL VP F VP W DLWG LG V +IR+R + PDR L+ GF+W D+ + ++ V AL Y ++ G VP F VP P WP +CW L+LG A+ D+RC+G
Sbjct: 85 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 208
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A7S2JR57_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR57_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.180e-19 Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 4 QVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTD--AAKSS-YANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
Q+YDAL+QYK + GNL VP+ F VPD W + GL LG ++ IR++ Y++N P++ + L E G AA S+ Y V AL Y ++ G + VP FVVP W + WGLRLG + IR +G
Sbjct: 188 QIYDALVQYKKEFGNLDVPITFSVPDIESWPQHSRGLPLGSKLATIRSK-TYLKNRPEQRKKLEELGLQLDGKVAANSARYHLVYDALVRYKEIYG-DLLVPQPFVVPKEAEDWNEPFWGLRLGARVNAIRSQG 319
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: W4H196_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H196_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.460e-18 Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
AL YK+ + NL VP F VP W DLWG LG V +IR+R + PDR L+ GF+W D+ + ++ V AL Y ++ G VP F VP P WP +CW L+LG A+ D+RC+G
Sbjct: 95 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 218
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Match: A0A418DX94_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DX94_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 5.170e-18 Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 16 ALLQYKAQHGNLHVPVAFRVPD-CPPWHEDLWGLALGQRVLDIRARHRYIRNDPDRVRMLNEAGFLWTDAAKSSYANVVGALKAYHKVKGREFSVPSSFVVPSFLP-WPQSCWGLRLGTALVDIRCKG 393
AL YK+ + NL VP F VP W DLWG LG V +IR+R + PDR L+ GF+W D+ + ++ V AL Y ++ G VP F VP P WP +CW L+LG A+ D+RC+G
Sbjct: 85 ALKTYKSLYHNLLVPYEFTVPPHAATWSRDLWGCKLGVAVTNIRSRAHQL--PPDRKAELDALGFVW-DSHELTFDIKVLALNTYKQLHGH-VHVPFEFKVPDTHPSWPPTCWKLKLGRAVHDLRCRG 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156761.3700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156761.3700.1 >prot_H-elongata_contig156761.3700.1 ID=prot_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp RQVYDALLQYKAQHGNLHVPVAFRVPDCPPWHEDLWGLALGQRVLDIRARback to top mRNA from alignment at H-elongata_contig156761:395..1376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156761.3700.1 ID=mRNA_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig156761:395..1376- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156761:395..1376- >mRNA_H-elongata_contig156761.3700.1 ID=mRNA_H-elongata_contig156761.3700.1|Name=mRNA_H-elongata_contig156761.3700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig156761:395..1376- (Himanthalia elongata Himel1 dioecious)back to top |