mRNA_H-elongata_contig15668.3695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15668.3695.1
Unique NamemRNA_H-elongata_contig15668.3695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Match: D8LIT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.450e-13
Identity = 110/313 (35.14%), Postives = 137/313 (43.77%), Query Frame = 1 
Query:    1 VETHTQPMKVSPIKVSDTFQQQQESASQARRNFGEG-GGAPAARGGVSRVTAP-PFAAAPAPSSPFLGTEKAPSPXXXXXGPSRVPTWLDHTAGREPARPHFMRSAAQQQQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEESA-KEAKRRAFIEDRARIQ-------------------------------------ARISARNSKADEETSSWKPSXXXXXXRTITPEAQQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVE-EAGAAA-GYVTAEEDSAWLERERAQR 813
            +++ T PMK   I V    QQQQ+  S+   N G G GG   A G    + AP P++A         G    P P        RVPTW       EPARPHFMR+A+ QQ+PRA+P K+  +TA           A   V     +   +   +S EE+A KEAKR AF+EDRARIQ                                     ARI+A  SK      +  P       R  TP AQ I    QQ   F   ++ +A G  G FSG+  FLDGV  + GA A G    +E  AWLERER QR
Sbjct:   64 LDSTTAPMKSQTI-VPPKSQQQQQPHSRTHPNIGAGMGGGMGADGRAKAMKAPQPYSA--------FGKAAPPPPPATVEDAGRVPTWQGRGEP-EPARPHFMRNASPQQKPRASPAKTVPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQEEAARKEAKRLAFMEDRARIQYLYRVRRDMEPAREVGDQASGGSIPMLDFRPQRDGRKARIAA--SKGGRAAPASFPKPTPTTTRQSTPAAQDIKA--QQPELFETPLAASA-GEGGTFSGSPSFLDGVGGDVGAGAEGGRADDEAEAWLEREREQR 361
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BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Match: A0A6H5K203_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K203_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.100e-13
Identity = 89/218 (40.83%), Postives = 107/218 (49.08%), Query Frame = 1 
Query:  169 APAPSSPFLGTEKAPSPXXXXXGPSRVPTWLDHTAGREPARPHFMRSAAQQQQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEESAK-EAKRRAFIEDRARIQARISARNSKADEETSSWKPSXXXXXXRTITPEAQQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVE-EAGAAAGYVTAEEDS-AWLERERAQR 813
            AP PSS F G    P          RVPTW    A  EPA PHFMR+A+ QQ+ RA   KS  +TA           A   V     +   +   +S EE+AK EAKR AF+EDRARIQARI+A  SK      +  P           P AQ I   Q Q        S  +AG  G FSG+  FLD V  + GA AG   A++++ AWLERER QR
Sbjct:  165 APQPSSAF-GKAAPPXXPATVEDAGRVPTWQGR-AEPEPAWPHFMRNASPQQKSRAPSAKSAPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQEEAAKKEAKRLAFMEDRARIQARIAA--SKGGRAAPASSPKPTPTTTHQSAPAAQDI---QAQKPEPFETPSAASAGEGGSFSGSPSFLDSVGGDVGAGAGGGRADDEAEAWLEREREQR 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIT5_ECTSI2.450e-1335.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K203_9PHAE8.100e-1340.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15668contigH-elongata_contig15668:3936..7696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_001440.1
Exons4
Model size888
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15668.3695.1prot_H-elongata_contig15668.3695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15668 3957..7696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.7380915-UTR-H-elongata_contig15668:3935..39561622929924.7380915-UTR-H-elongata_contig15668:3935..3956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15668 3936..3956 +
1691679210.3052745-UTR-H-elongata_contig15668:3935..39561691679210.3052745-UTR-H-elongata_contig15668:3935..3956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15668 3936..3956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.7580051-CDS-H-elongata_contig15668:3956..41891622929924.7580051-CDS-H-elongata_contig15668:3956..4189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 3957..4189 +
1691679210.3133523-CDS-H-elongata_contig15668:3956..41891691679210.3133523-CDS-H-elongata_contig15668:3956..4189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 3957..4189 +
1622929924.774226-CDS-H-elongata_contig15668:4397..44611622929924.774226-CDS-H-elongata_contig15668:4397..4461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 4398..4461 +
1691679210.3230772-CDS-H-elongata_contig15668:4397..44611691679210.3230772-CDS-H-elongata_contig15668:4397..4461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 4398..4461 +
1622929924.7927966-CDS-H-elongata_contig15668:6492..66961622929924.7927966-CDS-H-elongata_contig15668:6492..6696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 6493..6696 +
1691679210.338969-CDS-H-elongata_contig15668:6492..66961691679210.338969-CDS-H-elongata_contig15668:6492..6696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 6493..6696 +
1622929924.8157756-CDS-H-elongata_contig15668:7330..76961622929924.8157756-CDS-H-elongata_contig15668:7330..7696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 7331..7696 +
1691679210.3491652-CDS-H-elongata_contig15668:7330..76961691679210.3491652-CDS-H-elongata_contig15668:7330..7696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15668 7331..7696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15668.3695.1

>prot_H-elongata_contig15668.3695.1 ID=prot_H-elongata_contig15668.3695.1|Name=mRNA_H-elongata_contig15668.3695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MKVSPIKVSDTFQQQQESASQARRNFGEGGGAPAARGGVSRVTAPPFAAA
PAPSSPFLGTEKAPSPPPPAPGPSRVPTWLDHTAGREPARPHFMRSAAQQ
QQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEES
AKEAKRRAFIEDRARIQARISARNSKADEETSSWKPSPAPAPARTITPEA
QQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVEEAGAAAGYVTA
EEDSAWLERERAQREQKERERQEAAERERKRRMEEEAR*
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mRNA from alignment at H-elongata_contig15668:3936..7696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15668.3695.1 ID=mRNA_H-elongata_contig15668.3695.1|Name=mRNA_H-elongata_contig15668.3695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3761bp|location=Sequence derived from alignment at H-elongata_contig15668:3936..7696+ (Himanthalia elongata Himel1 dioecious)
GTGGAGACACACACACAGCCCATGAAGGTATCCCCCATAAAGGTTTCTGA
TACTTTCCAGCAACAGCAGGAGAGCGCGAGCCAAGCCCGACGCAACTTCG
GCGAAGGCGGTGGCGCGCCGGCGGCGAGGGGAGGTGTATCTAGGGTAACA
GCACCCCCTTTCGCCGCGGCGCCGGCCCCTTCTTCTCCGTTCCTGGGTAC
AGAAAAGGCGCCGTCGCCCCCCCCGCCGGCTCCCGGCCCTTCCCGCGTGC
CAACGTGAGTAGTTCTGGCCCCAGGTCGGTCTCGGGGAGAATGTTCCATA
TTTTAATAAGCGGCGGCGTTGTTGGCAGCATCATCAGCAGCAGCAGCAGC
AGTGCTACGAATACTATATAGTGGCAAGATAATCATCATCAGCATCAGCA
GCAGTAGCGGACGGTTGATGGTCGCATCTCCTGTTACTCTTCGTTCGCCG
TCTCGATTTTAGGTGGCTGGACCATACAGCGGGGCGCGAGCCAGCGCGTC
CGCACTTCATGAGGAGCGCCGCTCAGGTATGTGTGTGTGTGTCTGTGTCT
GTGTGTGACGGCGCGTTCTGCTTTCGATCGTTGCATTCGTGCGCGCGCCC
CCATATATATATAGAGAGAGAGCTATATAGAGCTAGAGAGAGAGATGGTG
GGGCAATAAATCGCTTGGCACGCCTTCGTCCGGTGTCGCCCTTTAAGTTA
AGCTCCTGTGCCCTTCCTTTCACCTCCCCCCTCCCCTTCCCCTCCAGGCT
GAAGGCGGTATGGTATACTCTTTGCTCGTGCTATTTTCTGTCCACGCTGA
TTGGTTTACCGCATGCAGATTTTGGCATATGGATGTGTATCGTATCGGCT
GTAAAAAAAGCTCCAAAAGTTGTCTCCGCAAGAAAGGATCTTGTCCGTGT
GGTATAGAGTAACACCAAACCTATATAAAGGCTGACATGTGTGTTTGGAA
TATAACCATGTTGGTAGAAATATATATATATATATATATATATATATATT
TTGTGCTTTTTTAGTGTAAGATATTATTTCACGAAGTTTGCAGACCGCAT
ATTTGTAACCCATATCTTGAAAAAGAAGGGAGGTAGTGTAGGATAAGGTA
AGGGATGCTTTATTTTATTTTATTGCTACGGAAAAGGGTTTGGTTCCCTT
GGTAACTTGACTAGAACGGGAAATAAAAAAACGGGTAGGTTACATGTGAG
TACAGTGCAGTAAACCTCGAATGACTAGCACGAGAAGGGGCCGGATTGCG
CGGTTAGGTGCAATTTAAATATATACACACACTCACACGCATAGAAGTTG
GTCTAAAGCGGATACGCTTCGTGGGATTCACGCTAACGTCTGGTGAGCGT
GGCCACCCTGCGCGATGCTAGCTGCAGCTGCGCTAGAAGAAGAGGCCAGC
GATGAAGTCATGTCGTCATGCCGTCTCCGCTTGAACGACGGTCGTGGTGG
ACAGGGTAGACTATACTATAGTGATAGTGATGATCGTATCGTGCAGATAG
TACTGTTGCTGTGATTGTCATTGCTGCCAACGCCTTCGCGCGTTTCTTGG
TGGGGGTCTGCGGCAGAATAGTGAGGGTATCGCTCAAGGCGCCTAAAATA
CTAGTAGGGGGGTCTCTCATTTTTGAGGAGGAACTGTTTTGGAAAGTGTG
GAGCTGTTAGCACGTTTGCGGGTGAGCGATAGATGGCCCAACCGAGAGAA
AGATATACTTCATATATACCAGGGTTTACATACATATCTCTATATATATA
TATATTGTATGTACACAATGTTTGAAATCCAGGAGCCCCGGGAGAAGAAG
GCTGTAGACGCTCGGGAGATCTAGTAAAAAGAAATGGCGAGAGCTTTTGC
AACAACGAAAACCTGGGTCACAAACTTTGAAAGCTTACAAAACTTGACAG
ATTAAATTCTTAAATCTGCGGTAAAAGAGGAAGACTTGCCAGATAGGGTG
AATAATACGTGACAGATAGGGTAAAGAATACGTACGTGCTGCATACGCTA
AAGAAGGCGTGTGTCAGATGGGATAAAAAGTACGTGCCAGATAGGGTAAA
TAATATGTGCTAAATACTAAATACGGTAAAAACAACAACATGATAGATAC
TGTAATTAATACAGTACGTGATAGATACTGTAAATAATACAGTACGTGAT
AGATACGGTAAATAATACAGTACGTGATAGATACGGTAAATAATACAGTA
CGTGGTAGACACGGTAAATAATATAGTACGTGATAGATACGGTAAATAAT
ACAGTACGTGATAGATACGGTAAATAATACGGTACGTGATAGATATGCTA
AAGAAGACGCTCGGTAAAGTTCAACCCCTCAAGTGACACGAGTACACCTT
TACCCCGTCCCGGAAAAAACGCCTTCCGCGAACAGTGTCATTGCGCCTCC
TTAGCTTCCCATTTGCCCCTCGCGGGTTGTACCCCACAACGGCCTTTAGA
AACGACGGGGGGTAGAAGGGGGCGGGGGGGGGAGGCGTCGGTTTGTACCC
CCCAAAAAATGTTCCCCTCTTTACTACGACCTGCTTGCATCCTCCTGACG
GTAGCAGCAGCAGCAGCCGCGAGCGACCCCGAGGAAATCAACAACATCTA
CGGCGGTCCCGGCATCGAGACTGGAGGCGACCAGGCAGGCCGCTCTACCC
GTCGCTGCCGTCCGTTTCGCTGCGCACTCCGAGCCGGTGGCGTTGTCCCC
CGAGGAATCTGCGAAGGAGGCTAAGCGCAGGGCGTTCATAGAGGATCGCG
CCCGTATCCAGGTAACAGCAGTAGCAGTAATGGTAGTAGTTATCGTAGGA
GTTGCTTTTATTAAATTGCATATGACGGCGCAATCTGGCCCTGTCATCCC
AGTCATTCTATGCCACTCGCATTGATCCTCCTAGGGGGGGGATAGGGGGG
GATCAACGATACTTATTACAAAGGTAATAGGAGTAGTAGTAATAGTATTG
TCTGCTGCTTTTGTTGCGCTGTTTGCCTGACAACAAAAAGCTCTGGTCGT
TTACGGTAGTATGTGGCGCTTCTCGGCTGACGGCTTGGGCTGCTGAGGTG
GGAGATGGTAGGAAGGGCTCTCTTTATCAATGTGATGCGCAATGCTATGC
AATCATGTTTTTTGTGTGTTTTGCTGTCCTATGTTATATGCTATTGCGGC
CCCGTTGCGTATGCGTTTTGTGAGCATGTGCGTAGTAGCATAGTGTACCT
ATGTGGCTCGTTTTTCGTGTACCTGGCGGGAAACCCTTGACAGGCTTCTA
TTCCTCATCCCCTTCGAGGCAGCGCGATTGTTTCCCAAGATCAGGCCAGA
TCGCTGATCGCATCGCCTATCCTCCCGCCGACCTCGTCTCGTATTTTACT
GATTTGTCTTGTCGCGAATGTTGCGCTCGCCCATCCCGCGGCCAGGCGAG
AATCTCGGCAAGGAATTCCAAAGCCGACGAGGAGACGAGCAGCTGGAAGC
CGAGCCCAGCCCCGGCCCCGGCTCGAACCATCACACCGGAGGCGCAGCAG
ATCGTGCAAGCCCAGCAGCAAGGAGCATCCTTCGGGGCAGGGGTTTCTGG
AAACGCTGCCGGGACAGCGGGGCCGTTCTCCGGCAACGCAAGGTTTCTTG
ACGGTGTCGAGGAGGCGGGAGCGGCAGCGGGGTACGTGACTGCGGAGGAA
GATTCGGCATGGTTGGAGCGGGAGCGAGCGCAGAGGGAACAGAAGGAGAG
GGAGAGGCAGGAGGCCGCGGAACGAGAGCGCAAGAGGCGGATGGAGGAGG
AGGCGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig15668:3936..7696+

>mRNA_H-elongata_contig15668.3695.1 ID=mRNA_H-elongata_contig15668.3695.1|Name=mRNA_H-elongata_contig15668.3695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig15668:3936..7696+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTATCCCCCATAAAGGTTTCTGATACTTTCCAGCAACAGCAGGA
GAGCGCGAGCCAAGCCCGACGCAACTTCGGCGAAGGCGGTGGCGCGCCGG
CGGCGAGGGGAGGTGTATCTAGGGTAACAGCACCCCCTTTCGCCGCGGCG
CCGGCCCCTTCTTCTCCGTTCCTGGGTACAGAAAAGGCGCCGTCGCCCCC
CCCGCCGGCTCCCGGCCCTTCCCGCGTGCCAACATGAAGGTATCCCCCAT
AAAGGTTTCTGATACTTTCCAGCAACAGCAGGAGAGCGCGAGCCAAGCCC
GACGCAACTTCGGCGAAGGCGGTGGCGCGCCGGCGGCGAGGGGAGGTGTA
TCTAGGGTAACAGCACCCCCTTTCGCCGCGGCGCCGGCCCCTTCTTCTCC
GTTCCTGGGTACAGAAAAGGCGCCGTCGCCCCCCCCGCCGGCTCCCGGCC
CTTCCCGCGTGCCAACGTGGCTGGACCATACAGCGGGGCGCGAGCCAGCG
CGTCCGCACTTCATGAGGAGCGCCGCTCAGGTGGCTGGACCATACAGCGG
GGCGCGAGCCAGCGCGTCCGCACTTCATGAGGAGCGCCGCTCAGCAGCAG
CAGCCGCGAGCGACCCCGAGGAAATCAACAACATCTACGGCGGTCCCGGC
ATCGAGACTGGAGGCGACCAGGCAGGCCGCTCTACCCGTCGCTGCCGTCC
GTTTCGCTGCGCACTCCGAGCCGGTGGCGTTGTCCCCCGAGGAATCTGCG
AAGGAGGCTAAGCGCAGGGCGTTCATAGAGGATCGCGCCCGTATCCAGCA
GCAGCAGCCGCGAGCGACCCCGAGGAAATCAACAACATCTACGGCGGTCC
CGGCATCGAGACTGGAGGCGACCAGGCAGGCCGCTCTACCCGTCGCTGCC
GTCCGTTTCGCTGCGCACTCCGAGCCGGTGGCGTTGTCCCCCGAGGAATC
TGCGAAGGAGGCTAAGCGCAGGGCGTTCATAGAGGATCGCGCCCGTATCC
AGGCGAGAATCTCGGCAAGGAATTCCAAAGCCGACGAGGAGACGAGCAGC
TGGAAGCCGAGCCCAGCCCCGGCCCCGGCTCGAACCATCACACCGGAGGC
GCAGCAGATCGTGCAAGCCCAGCAGCAAGGAGCATCCTTCGGGGCAGGGG
TTTCTGGAAACGCTGCCGGGACAGCGGGGCCGTTCTCCGGCAACGCAAGG
TTTCTTGACGGTGTCGAGGAGGCGGGAGCGGCAGCGGGGTACGTGACTGC
GGAGGAAGATTCGGCATGGTTGGAGCGGGAGCGAGCGCAGAGGGAACAGA
AGGAGAGGGAGAGGCAGGAGGCCGCGGAACGAGAGCGCAAGAGGCGGATG
GAGGAGGAGGCGAGGTAAGCGAGAATCTCGGCAAGGAATTCCAAAGCCGA
CGAGGAGACGAGCAGCTGGAAGCCGAGCCCAGCCCCGGCCCCGGCTCGAA
CCATCACACCGGAGGCGCAGCAGATCGTGCAAGCCCAGCAGCAAGGAGCA
TCCTTCGGGGCAGGGGTTTCTGGAAACGCTGCCGGGACAGCGGGGCCGTT
CTCCGGCAACGCAAGGTTTCTTGACGGTGTCGAGGAGGCGGGAGCGGCAG
CGGGGTACGTGACTGCGGAGGAAGATTCGGCATGGTTGGAGCGGGAGCGA
GCGCAGAGGGAACAGAAGGAGAGGGAGAGGCAGGAGGCCGCGGAACGAGA
GCGCAAGAGGCGGATGGAGGAGGAGGCGAGGTAA
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