mRNA_H-elongata_contig156629.3693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156629.3693.1
Unique NamemRNA_H-elongata_contig156629.3693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.210e-18
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A   L   + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK+E TPP+TP+
Sbjct:  647 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPK 744          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.060e-18
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK E TPP+TP+
Sbjct:   23 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPK 120          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.560e-18
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTP 297
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   +G+  K+ + RTDGGGE+ GQF    R  GIK+E TPP+TP
Sbjct:  483 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTP 579          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.170e-18
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPK-GLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            RLF++L G      +GGN + ++  DD TR+  V FLKHKS+A  A    + DY A     ++ V RTDGGGE+ GQF    R  GIK+E TPP TP+
Sbjct:  196 RLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPK 293          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.040e-17
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPK-GLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTP 297
            RLF+DL G      +GGN + ++  DD TR+  V F+KHKS+A  A    + DY A     ++ V RTDGGGE+ GQF    R  GIK+E TPP TP
Sbjct:   52 RLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTP 148          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-17
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            R+++DL G      +G N + ++  D F+R+  V FLKHKS+A       + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK+E TPP+TP+
Sbjct:   45 RVYLDLGGKMKTRSIGANWYTLIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPK 142          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.260e-17
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   KG+  ++ V RTDGGGE+ GQF    R  G K++ TPP+TP+
Sbjct:  500 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHTPK 597          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A1J3G8A6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G8A6_NOCCA)

HSP 1 Score: 82.0 bits (201), Expect = 2.090e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVIRTDGGGEW-HGQFLSFLRELGIKRESTPPYTPQ 300
            R+  DL GP   +   G R+++L +DDF+R+  V F+K KSE  +  ++         G KI  +RTD GGE+   +FLSF R+ GIKRE T PYTPQ
Sbjct:  118 RVHSDLMGPTRTSSYSGFRYMLLFVDDFSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKQGIKREFTCPYTPQ 215          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.320e-16
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   10 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVI--RTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 300
            R+++DL G      +GGN + ++  DDF+R+    FLKHKS+A       + DY   KG+   V   RTDGGGE+ GQF    R  GIK E TPP+TP+
Sbjct:  193 RVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPK 290          
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6L2N7P6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2N7P6_TANCI)

HSP 1 Score: 81.3 bits (199), Expect = 8.260e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   22 DLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVIRTDGGGEW-HGQFLSFLRELGIKRESTPPYTPQ 300
            DL GP     +GG+R+ +L IDD++R   V FLK+KSEA N  +   +      G  I VI+TD GGE+   +F++F  E GI +E T PYTPQ
Sbjct:  512 DLCGPMSVISIGGSRYFLLFIDDYSRMSWVYFLKNKSEAFNYFKKFKSYVEKQSGRNIKVIQTDRGGEFMSAEFITFCEEYGIHKELTAPYTPQ 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM30_9PHAE1.210e-1844.44Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAM7_9PHAE4.060e-1843.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE5.560e-1843.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE7.170e-1845.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF14_9PHAE1.040e-1746.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2Y3_9PHAE1.180e-1741.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZI6_9PHAE9.260e-1742.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J3G8A6_NOCCA2.090e-1643.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L1A7_9PHAE2.320e-1643.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2N7P6_TANCI8.260e-1644.68Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156629contigH-elongata_contig156629:1170..1469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.9
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog400682.PAC_15703055
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.5937645-CDS-H-elongata_contig156629:1169..14691622929924.5937645-CDS-H-elongata_contig156629:1169..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156629 1170..1469 +
1691679210.2834477-CDS-H-elongata_contig156629:1169..14691691679210.2834477-CDS-H-elongata_contig156629:1169..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156629 1170..1469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156629.3693.1prot_H-elongata_contig156629.3693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156629 1170..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156629.3693.1

>prot_H-elongata_contig156629.3693.1 ID=prot_H-elongata_contig156629.3693.1|Name=mRNA_H-elongata_contig156629.3693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
RAGRLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNAL
RDIINDYFAPKGLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ
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mRNA from alignment at H-elongata_contig156629:1170..1469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156629.3693.1 ID=mRNA_H-elongata_contig156629.3693.1|Name=mRNA_H-elongata_contig156629.3693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig156629:1170..1469+ (Himanthalia elongata Himel1 dioecious)
CGCGCGGGACGACTGTTTATTGATCTCTCAGGCCCCTTTCACGAGACGTA TCTCGGAGGAAACAGATTCGTTATGCTGTGCATTGACGACTTCACCCGCT TCAAAATGGTCCGTTTTCTCAAGCACAAGAGCGAGGCCACGAATGCGTTA AGGGACATAATCAACGACTACTTCGCGCCCAAGGGCCTCAAGATCGGCGT CATCCGCACGGACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCC TGCGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig156629:1170..1469+

>mRNA_H-elongata_contig156629.3693.1 ID=mRNA_H-elongata_contig156629.3693.1|Name=mRNA_H-elongata_contig156629.3693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig156629:1170..1469+ (Himanthalia elongata Himel1 dioecious)
CGCGCGGGACGACTGTTTATTGATCTCTCAGGCCCCTTTCACGAGACGTA
TCTCGGAGGAAACAGATTCGTTATGCTGTGCATTGACGACTTCACCCGCT
TCAAAATGGTCCGTTTTCTCAAGCACAAGAGCGAGGCCACGAATGCGTTA
AGGGACATAATCAACGACTACTTCGCGCCCAAGGGCCTCAAGATCGGCGT
CATCCGCACGGACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCC
TGCGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAA
CGCGCGGGACGACTGTTTATTGATCTCTCAGGCCCCTTTCACGAGACGTA
TCTCGGAGGAAACAGATTCGTTATGCTGTGCATTGACGACTTCACCCGCT
TCAAAATGGTCCGTTTTCTCAAGCACAAGAGCGAGGCCACGAATGCGTTA
AGGGACATAATCAACGACTACTTCGCGCCCAAGGGCCTCAAGATCGGCGT
CATCCGCACGGACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCC
TGCGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAA
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