mRNA_H-elongata_contig156506.3685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156506.3685.1
Unique NamemRNA_H-elongata_contig156506.3685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.030e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   25 QVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDC 138
            ++GGKMVYSTCSLNPIEDEAVVAE+LRRC GNL+L DC
Sbjct:  330 KIGGKMVYSTCSLNPIEDEAVVAEVLRRCGGNLELEDC 367
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.030e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   25 QVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDC 138
            ++GGKMVYSTCSLNPIEDEAVVAE+LRRC GNL+L DC
Sbjct:  174 KIGGKMVYSTCSLNPIEDEAVVAEVLRRCGGNLELEDC 211
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A7S4HLX5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HLX5_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 3.080e-13
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 IRSTQVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            I+  ++GG+MVYSTCSLNP+EDEAVVAE+LRR KG LQL+D S
Sbjct:   40 IKLLKIGGRMVYSTCSLNPVEDEAVVAEILRRGKGALQLVDVS 82
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A383VTQ6_TETOB (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VTQ6_TETOB)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 AIRSTQVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            A+R  +VGG+MVYSTC+ NPIEDEAVVAELL RCKG LQLLD S
Sbjct:  345 AVRLLKVGGRMVYSTCTPNPIEDEAVVAELLVRCKGALQLLDVS 388
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A196SR21_BLAHN (tRNA (Cytosine-5-)-methyltransferase NSUN2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SR21_BLAHN)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VVVAIRSTQ---VGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            V +A+R  Q   VGG+MVYSTCSLNP+EDEAVVAELLRRC G ++L+D S
Sbjct:  262 VAIALRGLQLLRVGGRMVYSTCSLNPVEDEAVVAELLRRCAGRVRLVDAS 311
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: UPI0020099732 (RNA cytosine-C(5)-methyltransferase NSUN2-like n=2 Tax=Salvia TaxID=21880 RepID=UPI0020099732)

HSP 1 Score: 68.2 bits (165), Expect = 3.680e-12
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   25 QVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            +VGG+MVYSTCS+NP+E+EAVVAELLRRCKG ++LLD S
Sbjct:  328 KVGGRMVYSTCSMNPVENEAVVAELLRRCKGTVELLDVS 366
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A7J7PIF0_9CHLO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIF0_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 3.680e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 AIRSTQVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            A+R  +VGG+MVYSTC+ NPIEDEAVVAELL RC+G LQLLD S
Sbjct:  353 AVRLLKVGGRMVYSTCTPNPIEDEAVVAELLVRCQGALQLLDVS 396
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BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: W1NJC3_AMBTC (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NJC3_AMBTC)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 28/39 (71.79%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   25 QVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            +VGG++VYSTCS+NPIEDEAVV E+LRRC G++++LDCS
Sbjct:  337 KVGGRLVYSTCSMNPIEDEAVVGEILRRCGGSVEILDCS 375
[Close]
BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A833R1N1_9POAL (tRNA (Cytosine(34)-C(5))-methyltransferase-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1N1_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 VVVAIRST---QVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS 141
            VV+A+R     +VGG+MVYSTCS+NP+E+EAVVAE+LRRC+G+++LLD S
Sbjct:  312 VVIAMRGLALLKVGGRMVYSTCSMNPVENEAVVAEILRRCEGSVELLDVS 361
[Close]
BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Match: A0A7S4CTK0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CTK0_9EUGL)

HSP 1 Score: 67.4 bits (163), Expect = 6.860e-12
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 VAIRSTQ---VGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLD 135
            VA+R  +   VGG+MVYSTCSLNP+EDEAVVA LLRRC+G+L+LLD
Sbjct:  297 VALRGAKLLAVGGRMVYSTCSLNPLEDEAVVARLLRRCEGSLRLLD 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156506.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDC1_9PHAE3.030e-1384.21SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
D8LLJ3_ECTSI3.030e-1384.21SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S4HLX5_9EUKA3.080e-1372.09Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A383VTQ6_TETOB1.060e-1277.27SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A196SR21_BLAHN1.440e-1268.00tRNA (Cytosine-5-)-methyltransferase NSUN2 n=1 Tax... [more]
UPI00200997323.680e-1276.92RNA cytosine-C(5)-methyltransferase NSUN2-like n=2... [more]
A0A7J7PIF0_9CHLO3.680e-1275.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
W1NJC3_AMBTC5.030e-1271.79SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A833R1N1_9POAL5.030e-1264.00tRNA (Cytosine(34)-C(5))-methyltransferase-like pr... [more]
A0A7S4CTK0_9EUGL6.860e-1271.74Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156506contigH-elongata_contig156506:391..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D8LLJ3
KEGG koko:K15334,ko:K15335
EggNOG free text desc.tRNA (cytosine-5-)-methyltransferase activity
EggNOG OGsCOG0144@1,KOG2198@2759
EC2.1.1.202,2.1.1.203
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.5249267-CDS-H-elongata_contig156506:390..5311622929923.5249267-CDS-H-elongata_contig156506:390..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156506 391..531 +
1691679210.0384912-CDS-H-elongata_contig156506:390..5311691679210.0384912-CDS-H-elongata_contig156506:390..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156506 391..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156506.3685.1prot_H-elongata_contig156506.3685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156506 391..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156506.3685.1

>prot_H-elongata_contig156506.3685.1 ID=prot_H-elongata_contig156506.3685.1|Name=mRNA_H-elongata_contig156506.3685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
VVVAIRSTQVGGKMVYSTCSLNPIEDEAVVAELLRRCKGNLQLLDCS
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mRNA from alignment at H-elongata_contig156506:391..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156506.3685.1 ID=mRNA_H-elongata_contig156506.3685.1|Name=mRNA_H-elongata_contig156506.3685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig156506:391..531+ (Himanthalia elongata Himel1 dioecious)
GTTGTTGTGGCAATTCGCTCGACCCAGGTCGGTGGCAAGATGGTATACTC
CACGTGCTCGCTGAACCCGATCGAGGACGAAGCCGTCGTCGCGGAGCTAC
TCCGGCGTTGCAAGGGAAACTTGCAGCTCTTAGATTGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig156506:391..531+

>mRNA_H-elongata_contig156506.3685.1 ID=mRNA_H-elongata_contig156506.3685.1|Name=mRNA_H-elongata_contig156506.3685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig156506:391..531+ (Himanthalia elongata Himel1 dioecious)
GTTGTTGTGGCAATTCGCTCGACCCAGGTCGGTGGCAAGATGGTATACTC
CACGTGCTCGCTGAACCCGATCGAGGACGAAGCCGTCGTCGCGGAGCTAC
TCCGGCGTTGCAAGGGAAACTTGCAGCTCTTAGATTGCAGCGTTGTTGTG
GCAATTCGCTCGACCCAGGTCGGTGGCAAGATGGTATACTCCACGTGCTC
GCTGAACCCGATCGAGGACGAAGCCGTCGTCGCGGAGCTACTCCGGCGTT
GCAAGGGAAACTTGCAGCTCTTAGATTGCAGC
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