mRNA_H-elongata_contig156444.3681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156444.3681.1
Unique NamemRNA_H-elongata_contig156444.3681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A6H5K0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.540e-34
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:   43 ERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            ERDALVERMMEKD++KTK++ELGGLTPAQ+SELATRGKVTS++G   DL+TKELRE+SRQMYLPKRAEKELKLLEAQL+DEE LF
Sbjct:  287 ERDALVERMMEKDKSKTKQMELGGLTPAQISELATRGKVTSESGEQRDLTTKELREISRQMYLPKRAEKELKLLEAQLQDEESLF 371
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: D8LHZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ7_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.050e-32
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:   43 ERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            ERDALVERM++KD++KTK++ELGGLTPAQ+SELATRGKVTS++G   DL+TKELRE+SRQMYLPKRAEKELKLLEAQL+DEE LF
Sbjct:  217 ERDALVERMLDKDKSKTKQMELGGLTPAQISELATRGKVTSESGEQRDLTTKELREISRQMYLPKRAEKELKLLEAQLQDEESLF 301
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A835YTF2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.590e-28
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 EAEAAEMERERDLDERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSDAGGGD------DLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            E +AAE +R  DL+ERDALVERMME+D++KTK  ELGGLTPAQV ELATRG V   AGGG       +LS  E+R +SRQ+YLPKRA+KEL+LLE QLRDEEELF
Sbjct:  164 EEDAAERQRRADLEERDALVERMMERDKSKTKSAELGGLTPAQVQELATRG-VLRGAGGGXXXXXXXELSMAEMRALSRQVYLPKRADKELRLLEMQLRDEEELF 267
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A7S3H044_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H044_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.600e-19
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   10 AAEMERERDLDERDALVERMMEKDETKTKRLEL-GGLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            AAE +RE DL ERDA V R+MEKDE++TK+ E   GL+  Q+ ELATRG + SD G G   +  +LRE+SRQ YL KR EKELKLLE  LRDE ELF
Sbjct:   92 AAERQREIDLAERDAFVNRLMEKDESRTKKQEQEAGLSAQQIHELATRGAL-SDKGAGTS-TIDQLREISRQHYLEKREEKELKLLEMSLRDEAELF 186
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A7S2STE0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STE0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.150e-18
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   16 EMERERDLDERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            E+ERE+DL ERD LVERM E+D  KTK+ + GGLT  QV ELATRG V+       DLS +++RE+SR++YL KR  KEL+L E  LRDEE++F
Sbjct:   11 EVEREKDLRERDELVERMRERDTQKTKKFDNGGLTDEQVKELATRGTVSESK----DLSVEQMREVSRRLYLQKREAKELELAERGLRDEEDMF 100
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A7S1XPJ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPJ3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.310e-13
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   34 DLDERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            D+ ERDA+VERM+++D+ KT++   GG+T AQ   +A R    +    G++L+   LRE+SRQ+YL KR EKEL L + +L +E++LF
Sbjct:   59 DIAERDAMVERMLQRDDDKTRKAARGGMTAAQEEAVAARQAAEAGIPKGEELTVDRLREISRQVYLKKREEKELMLAQMELEEEDDLF 146
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A662WSU0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSU0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-12
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   16 EMERERDLDERDALVERMMEKDETKTKR----------LELGGLTPAQVSELATRGKVTSDAGGGDDLSTK--ELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            E ER  D +ERDA  ER+ ++DE +TKR             GGLT  ++S+LA RG V     G D +S K   LRE+SRQ YL KR EKEL+LLE QL+DE+ LF
Sbjct:   71 ERERRHDREERDAFAERLRQRDEDRTKRRRTAEEPDDAAHTGGLTAGEISQLAKRGAVGE---GTDAISEKLARLRELSRQEYLKKREEKELELLEFQLKDEDVLF 173
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BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: D0NNB4_PHYIT (Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=21 Tax=Peronosporaceae TaxID=4777 RepID=D0NNB4_PHYIT)

HSP 1 Score: 67.8 bits (164), Expect = 4.280e-11
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   16 EMERERDLDERDALVERMMEKDETKTKRLELG-------GLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            E ER RD +ERDA  ER+ ++DE +TK            GLT  ++ +LA RG  T DA   + L+  +LRE+SRQ YL KR EKEL+LLE QLRDE+ LF
Sbjct:   67 ERERLRDREERDAFAERLRQRDEERTKHKRKAEEIEGRKGLTSDEIKQLAKRG--TLDAAQSERLN--QLRELSRQEYLKKREEKELELLEFQLRDEDVLF 163
[Close]
BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A7S3ZYD7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYD7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.480e-10
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   34 DLDERDALVERMMEKDETKTKRLELG-GLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            DL+ERDALV+RM E+DE +TKRLE   GL+  +++ELATRG V   A   D    K +R+ +RQ YL K   K+L LL+A++  EE+LF
Sbjct:  127 DLEERDALVQRMRERDELRTKRLEAEQGLSQQEIAELATRGTVDPLAREDD---VKLMRKFARQAYLDKWEAKQLDLLQAEVDQEEQLF 212
[Close]
BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Match: A0A7S3ZYK6_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYK6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-10
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   34 DLDERDALVERMMEKDETKTKRLELG-GLTPAQVSELATRGKVTSDAGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF 297
            DL+ERDALV+RM E+DE +TKRLE   GL+  +++ELATRG V   A   D    K +R+ +RQ YL K   K+L LL+A++  EE+LF
Sbjct:  127 DLEERDALVQRMRERDELRTKRLEAEQGLSQQEIAELATRGTVDPLAREDD---VKLMRKFARQAYLDKWEAKQLDLLQAEVDQEEQLF 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156444.3681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0D3_9PHAE2.540e-3483.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ7_ECTSI1.050e-3281.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF2_9STRA7.590e-2867.62P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3H044_9STRA6.600e-1960.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2STE0_9STRA1.150e-1857.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XPJ3_9STRA2.310e-1345.45Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A662WSU0_9STRA1.390e-1249.06Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0NNB4_PHYIT4.280e-1149.50Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A7S3ZYD7_9STRA1.480e-1050.56Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ZYK6_9STRA1.500e-1050.56Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156444contigH-elongata_contig156444:252..1219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3e-28
Seed eggNOG ortholog2880.D8LHZ7
Preferred namecdc28
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0923@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156444.3681.1prot_H-elongata_contig156444.3681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156444 270..1219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.0837579-UTR-H-elongata_contig156444:251..2691622929923.0837579-UTR-H-elongata_contig156444:251..269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156444 252..269 +
1691679209.8973222-UTR-H-elongata_contig156444:251..2691691679209.8973222-UTR-H-elongata_contig156444:251..269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156444 252..269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.1003492-CDS-H-elongata_contig156444:269..3801622929923.1003492-CDS-H-elongata_contig156444:269..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156444 270..380 +
1691679209.9093127-CDS-H-elongata_contig156444:269..3801691679209.9093127-CDS-H-elongata_contig156444:269..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156444 270..380 +
1622929923.1136258-CDS-H-elongata_contig156444:1051..12191622929923.1136258-CDS-H-elongata_contig156444:1051..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156444 1052..1219 +
1691679209.9196832-CDS-H-elongata_contig156444:1051..12191691679209.9196832-CDS-H-elongata_contig156444:1051..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156444 1052..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156444.3681.1

>prot_H-elongata_contig156444.3681.1 ID=prot_H-elongata_contig156444.3681.1|Name=mRNA_H-elongata_contig156444.3681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MERERDLDERDALVERMMEKDETKTKRLELGGLTPAQVSELATRGKVTSD
AGGGDDLSTKELREMSRQMYLPKRAEKELKLLEAQLRDEEELF
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mRNA from alignment at H-elongata_contig156444:252..1219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156444.3681.1 ID=mRNA_H-elongata_contig156444.3681.1|Name=mRNA_H-elongata_contig156444.3681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=968bp|location=Sequence derived from alignment at H-elongata_contig156444:252..1219+ (Himanthalia elongata Himel1 dioecious)
GAAGCGGAAGCGGCCGAAATGGAGAGGGAGCGCGACCTGGACGAGAGGGA
CGCACTGGTGGAGCGTATGATGGAAAAGGACGAGACCAAGACTAAAAGGC
TTGAGCTGGGAGGGTTGACGCCGGCGCAGGTGCGGGATGTAACGACAGAC
AGAAGAGAAAACCCACGGAAAAAACGAAAATAGGTGACCCTCACTCTTAA
GTTGTGCGGACAGGGGGGGGGGGGAGTCGGTGTGTGTTTGCATAGTGTCT
TTTTTATTAATGGAAGGGGAAAAAAGTGAAACATGACGCTAAAGGAGAAT
CTGCTATGGGCTTTTTCTTTTTTATGTTTTCGTCTTTACCTGTCTACTTA
CTTTGTATTATTTTTATCGCTACCTCTTACATTTCTATATTTATTTGCCT
AAAAGATAGTATTATAGGGGTTGCTCTCTACATCGTCCCCTCCCGACCGC
TGTGTCCTCCACTGTACTACCCTATGCTTTACTGAGATGTATTATACGAT
GGTCTGTGTTTGGTCATGACGTCATTATGACATCATCACCTATAGCAAAG
TAAGGATCAACCGGATTTGGTTGCCTCCTGTTTGTGGTCAGCTGAATAAA
GAAAAATGAACTTTCCCCTGTCCCCGTTCGTTTGCGCCTGGAAATTTGGT
CTCGCGAAACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTTATTCTC
TCAACGCAGGCTGAATCGGGTGCGTGTACTCCCGGAATCCTTTCGATCCT
CTTATCGTATACTATTAATAATATCTTATTCACGATGCTTTACCGTGCAG
GTGTCTGAGCTGGCGACTCGTGGAAAGGTCACGAGCGACGCAGGAGGTGG
CGACGACCTAAGCACAAAAGAGCTCAGGGAGATGAGCCGGCAAATGTACC
TCCCCAAGCGGGCCGAAAAGGAGCTGAAGCTCTTGGAGGCGCAGCTAAGG
GACGAGGAGGAGCTATTC
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Coding sequence (CDS) from alignment at H-elongata_contig156444:252..1219+

>mRNA_H-elongata_contig156444.3681.1 ID=mRNA_H-elongata_contig156444.3681.1|Name=mRNA_H-elongata_contig156444.3681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig156444:252..1219+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAGGGAGCGCGACCTGGACGAGAGGGACGCACTGGTGGAGCGTAT
GATGGAAAAGGACGAGACCAAGACTAAAAGGCTTGAGCTGGGAGGGTTGA
CGCCGGCGCAGATGGAGAGGGAGCGCGACCTGGACGAGAGGGACGCACTG
GTGGAGCGTATGATGGAAAAGGACGAGACCAAGACTAAAAGGCTTGAGCT
GGGAGGGTTGACGCCGGCGCAGGTGTCTGAGCTGGCGACTCGTGGAAAGG
TCACGAGCGACGCAGGAGGTGGCGACGACCTAAGCACAAAAGAGCTCAGG
GAGATGAGCCGGCAAATGTACCTCCCCAAGCGGGCCGAAAAGGAGCTGAA
GCTCTTGGAGGCGCAGCTAAGGGACGAGGAGGAGCTATTCGTGTCTGAGC
TGGCGACTCGTGGAAAGGTCACGAGCGACGCAGGAGGTGGCGACGACCTA
AGCACAAAAGAGCTCAGGGAGATGAGCCGGCAAATGTACCTCCCCAAGCG
GGCCGAAAAGGAGCTGAAGCTCTTGGAGGCGCAGCTAAGGGACGAGGAGG
AGCTATTC
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