mRNA_H-elongata_contig156402.3678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156402.3678.1
Unique NamemRNA_H-elongata_contig156402.3678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156402.3678.1 vs. uniprot
Match: A0A6H5JMQ2_9PHAE (ORC3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.080e-16
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   25 ELLRVARTEGLRECLEIISTCVEESIFEASKGCVMEVSDFISGWRFGEEQEQGQGGSMGKNDLVPLAVVDAG 240
            E +R+ARTEGLRECL I+  CVEE++ EA   C+  VS +I+GWRF  + E G    +G++DLVPLAVVDAG
Sbjct:   62 EEVRLARTEGLRECLNIVKECVEEAVKEAGTDCIRSVSGYIAGWRF-RDGEGGGAKHVGESDLVPLAVVDAG 132
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BLAST of mRNA_H-elongata_contig156402.3678.1 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.110e-16
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   25 ELLRVARTEGLRECLEIISTCVEESIFEASKGCVMEVSDFISGWRFGEEQEQGQGGS---MGKNDLVPLAVVDAG 240
            E +R+ARTEGLRECL I+  C EE++ EA   C+  VSDFI+GWRF      G GG    +G++DLVPLAVVDAG
Sbjct:   62 EEVRLARTEGLRECLSIVKECGEEAVKEAGTDCIRSVSDFIAGWRF----RDGDGGGAKHVGESDLVPLAVVDAG 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156402.3678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ2_9PHAE2.080e-1656.94ORC3_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LJC7_ECTSI2.110e-1657.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156402contigH-elongata_contig156402:360..1220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.4814243-CDS-H-elongata_contig156402:359..4751622929922.4814243-CDS-H-elongata_contig156402:359..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156402 360..475 -
1691679209.8378663-CDS-H-elongata_contig156402:359..4751691679209.8378663-CDS-H-elongata_contig156402:359..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156402 360..475 -
1622929922.4970565-CDS-H-elongata_contig156402:1069..12201622929922.4970565-CDS-H-elongata_contig156402:1069..1220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156402 1070..1220 -
1691679209.8454907-CDS-H-elongata_contig156402:1069..12201691679209.8454907-CDS-H-elongata_contig156402:1069..1220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156402 1070..1220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156402.3678.1prot_H-elongata_contig156402.3678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156402 360..1220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156402.3678.1

>prot_H-elongata_contig156402.3678.1 ID=prot_H-elongata_contig156402.3678.1|Name=mRNA_H-elongata_contig156402.3678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MTRPRAQNELLRVARTEGLRECLEIISTCVEESIFEASKGCVMEVSDFIS
GWRFGEEQEQGQGGSMGKNDLVPLAVVDAGEIIQQQAM*
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mRNA from alignment at H-elongata_contig156402:360..1220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156402.3678.1 ID=mRNA_H-elongata_contig156402.3678.1|Name=mRNA_H-elongata_contig156402.3678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig156402:360..1220- (Himanthalia elongata Himel1 dioecious)
ATGACTCGGCCGCGTGCGCAGAACGAGTTGCTGCGTGTTGCGAGGACCGA
GGGCCTGAGGGAGTGCCTAGAGATAATCTCGACGTGCGTGGAGGAATCCA
TCTTTGAGGCGAGCAAGGGCTGTGTGATGGAAGTGTCGGACTTCATCTCG
GGTGAGCGGGCATCCGAATGTCACCTTTTTTTCTTGTTTTATCACATGTT
AGTTTTCGAAATTGATAACGAGTAGTTGTACTTGGTTAGAGTATAGTGGT
TAGAGTATAGTGTTTAGAGTACAGTGGTTAGAGTTATCTGTTTGAGGGGA
TACATTTTTTTTTAATCCTTCAGTAGCAGAACTCGTCACAGCAGGAGTAC
ACTAAGTTTAATCAAGTTCAATCACGAATATTTTAAAAGCTTGACAAGAG
CTTTAGGAGTGTGCTGGAAGCTAAACCTTCCGAAGATATATAAATTGGTA
TTGATAAAGAGGCATTAACCAATCGGGGATTATATATATATACCCCAGTA
CTGTACAGTACAGTACCTCGGGAGGTCCACAGACGGTAAGGATAGGCAAC
GCTGCAGTAAGCGGGATTAGTGACTTAGCACTAGCATACTGAATATAATA
TGGAATATGGAATAACCCATCGGTAGAAAGTAATGATGTGTATTTTATAC
ACATTGATGTATATATAAAGCTGTACTGTATTCCAATCTATTCCTTCCTC
CGTGATACTGATATTCTATTCTATTTTTCAACTGAATTGTGGCAGGATGG
CGCTTTGGAGAAGAACAAGAACAAGGCCAAGGAGGGAGCATGGGAAAGAA
CGACCTCGTCCCGCTTGCTGTGGTCGATGCTGGTGAGATCATCCAACAAC
AAGCAATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig156402:360..1220-

>mRNA_H-elongata_contig156402.3678.1 ID=mRNA_H-elongata_contig156402.3678.1|Name=mRNA_H-elongata_contig156402.3678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig156402:360..1220- (Himanthalia elongata Himel1 dioecious)
ATGACTCGGCCGCGTGCGCAGAACGAGTTGCTGCGTGTTGCGAGGACCGA
GGGCCTGAGGGAGTGCCTAGAGATAATCTCGACGTGCGTGGAGGAATCCA
TCTTTGAGGCGAGCAAGGGCTGTGTGATGGAAGTGTCGGACTTCATCTCG
GATGACTCGGCCGCGTGCGCAGAACGAGTTGCTGCGTGTTGCGAGGACCG
AGGGCCTGAGGGAGTGCCTAGAGATAATCTCGACGTGCGTGGAGGAATCC
ATCTTTGAGGCGAGCAAGGGCTGTGTGATGGAAGTGTCGGACTTCATCTC
GGGATGGCGCTTTGGAGAAGAACAAGAACAAGGCCAAGGAGGGAGCATGG
GAAAGAACGACCTCGTCCCGCTTGCTGTGGTCGATGCTGGTGAGATCATC
CAACAACAAGCAATGTAGGATGGCGCTTTGGAGAAGAACAAGAACAAGGC
CAAGGAGGGAGCATGGGAAAGAACGACCTCGTCCCGCTTGCTGTGGTCGA
TGCTGGTGAGATCATCCAACAACAAGCAATGTAG
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