mRNA_H-elongata_contig156363.3676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156363.3676.1
Unique NamemRNA_H-elongata_contig156363.3676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Match: A0A6H5K260_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K260_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.940e-15
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:   16 QVEAKVEELWQQQLAKNPLLFNATKFRLAGFSTEGDH-SGASAPTAAFEVGSEETTGSNRWGHPAGKALPRAW-----------------ARARCSPPTKVLRLQLGLTDYRTFRG 309
            +VEA +E LWQ+QLAKNPLLFN +KFRLAGFSTEG+  S A+A T A                                           +    SPPT+ LRL+LGLTDYRTFRG
Sbjct:  307 EVEANIEVLWQEQLAKNPLLFNGSKFRLAGFSTEGNRKSSATAITTATATADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPMSSSPPTRKLRLRLGLTDYRTFRG 422
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BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Match: D8LHN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-9
Identity = 47/121 (38.84%), Postives = 56/121 (46.28%), Query Frame = 1 
Query:   10 RFQVEAKVEELWQQQ--------LAKNPLLFNATKFRLAGFSTEGDHSGASAPTAAFEVGS---EETTGSNRWGHPAGKALPRAWARARC----------SPPTKVLRLQLGLTDYRTFRG 309
            R QV   V E + ++        LAKNPLLFN +KF LAGFSTEGD   ++  TA          +TT                                SPPT+ LRL+LGLTDYRTFRG
Sbjct:   32 RDQVRVDVAEAYSRKPHPDPEALLAKNPLLFNGSKFWLAGFSTEGDRKPSATATATANPAGGAVSDTTXXXXXXXXXXXXXXXXXXXXXXXXXXSRSPTSSPPTRKLRLRLGLTDYRTFRG 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K260_9PHAE7.940e-1543.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN6_ECTSI1.830e-938.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156363contigH-elongata_contig156363:1033..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog2880.D8LHN6
Preferred nameNUDT22
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0008768,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0031981,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051716,GO:0052751,GO:0060359,GO:0070013,GO:0070887,GO:0071242,GO:1901698,GO:1901699
EggNOG free text desc.GDP-mannose hydrolase activity
EggNOG OGs28JDX@1,2QRSW@2759
Ec32 ortholog descriptionSirtuin histone deacetylase
Ec32 orthologEc-26_003780.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.3811414-CDS-H-elongata_contig156363:1032..13411622929922.3811414-CDS-H-elongata_contig156363:1032..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156363 1033..1341 -
1691679209.7881606-CDS-H-elongata_contig156363:1032..13411691679209.7881606-CDS-H-elongata_contig156363:1032..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156363 1033..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156363.3676.1prot_H-elongata_contig156363.3676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156363 1033..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156363.3676.1

>prot_H-elongata_contig156363.3676.1 ID=prot_H-elongata_contig156363.3676.1|Name=mRNA_H-elongata_contig156363.3676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
LSARFQVEAKVEELWQQQLAKNPLLFNATKFRLAGFSTEGDHSGASAPTA
AFEVGSEETTGSNRWGHPAGKALPRAWARARCSPPTKVLRLQLGLTDYRT
FRG
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mRNA from alignment at H-elongata_contig156363:1033..1341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156363.3676.1 ID=mRNA_H-elongata_contig156363.3676.1|Name=mRNA_H-elongata_contig156363.3676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig156363:1033..1341- (Himanthalia elongata Himel1 dioecious)
TTGTCCGCACGGTTCCAGGTTGAGGCGAAGGTGGAGGAGCTCTGGCAGCA
GCAGCTCGCCAAGAACCCCCTCTTGTTTAACGCCACGAAATTCCGCCTGG
CGGGATTCTCTACTGAGGGCGACCACTCCGGTGCCTCAGCCCCCACCGCC
GCATTCGAGGTGGGTTCCGAGGAGACGACGGGCTCAAACAGATGGGGACA
CCCGGCAGGGAAAGCCTTGCCGAGGGCGTGGGCGCGAGCGCGATGTTCTC
CCCCAACCAAGGTGCTCAGGCTGCAGCTCGGCTTGACCGATTATCGCACG
TTTCGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig156363:1033..1341-

>mRNA_H-elongata_contig156363.3676.1 ID=mRNA_H-elongata_contig156363.3676.1|Name=mRNA_H-elongata_contig156363.3676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig156363:1033..1341- (Himanthalia elongata Himel1 dioecious)
TTGTCCGCACGGTTCCAGGTTGAGGCGAAGGTGGAGGAGCTCTGGCAGCA
GCAGCTCGCCAAGAACCCCCTCTTGTTTAACGCCACGAAATTCCGCCTGG
CGGGATTCTCTACTGAGGGCGACCACTCCGGTGCCTCAGCCCCCACCGCC
GCATTCGAGGTGGGTTCCGAGGAGACGACGGGCTCAAACAGATGGGGACA
CCCGGCAGGGAAAGCCTTGCCGAGGGCGTGGGCGCGAGCGCGATGTTCTC
CCCCAACCAAGGTGCTCAGGCTGCAGCTCGGCTTGACCGATTATCGCACG
TTTCGAGGTTTGTCCGCACGGTTCCAGGTTGAGGCGAAGGTGGAGGAGCT
CTGGCAGCAGCAGCTCGCCAAGAACCCCCTCTTGTTTAACGCCACGAAAT
TCCGCCTGGCGGGATTCTCTACTGAGGGCGACCACTCCGGTGCCTCAGCC
CCCACCGCCGCATTCGAGGTGGGTTCCGAGGAGACGACGGGCTCAAACAG
ATGGGGACACCCGGCAGGGAAAGCCTTGCCGAGGGCGTGGGCGCGAGCGC
GATGTTCTCCCCCAACCAAGGTGCTCAGGCTGCAGCTCGGCTTGACCGAT
TATCGCACGTTTCGAGGT
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