mRNA_H-elongata_contig156362.3675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156362.3675.1
Unique NamemRNA_H-elongata_contig156362.3675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 8.990e-47
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 GELVVGGRASRVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVR 255
            GELVVGGRASRVMRGHNGDV+DLSWS NAFLLSAGRDGSLRLWHP RLGCVHLFPQTG ATPTSC+F+PRLENSF TGGEDGKVR
Sbjct:  860 GELVVGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVR 944          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.230e-46
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 GELVVGGRASRVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVR 255
            GELV+GGRASRVMRGHNGDV+DLSWS NAFLLSAGRDGSLRLWHP RLGCVHLFPQTG ATPTSC+F+PRLENSF TGGEDGKVR
Sbjct: 1147 GELVIGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVR 1231          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: A0A4P9Y9H8_9FUNG (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y9H8_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 4.640e-17
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   31 RVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVR 255
            R   GH GDV+DL+WS N FLLSA  D ++RLWH  R  C+++FP   P   TS +FHP+ +  F++G  DG++R
Sbjct:   80 RRWEGHKGDVMDLAWSKNNFLLSASMDRTVRLWHVSRAACLYVFPH--PDFVTSVSFHPKDDRCFLSGSIDGRMR 152          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: A0A4U7L1T4_9BASI (Uncharacterized protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7L1T4_9BASI)

HSP 1 Score: 84.0 bits (206), Expect = 6.030e-17
Identity = 43/77 (55.84%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   34 VMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            V  GH GDVLDLSWS N FLLS   D + RLWHP R  C+  F  T  AT +S  FHP  +  FVTGG DGK+R  N
Sbjct:  554 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSATVSSVDFHPVDDRFFVTGGLDGKLRLWN 628          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: V5GKH9_KALBG (Uncharacterized protein n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5GKH9_KALBG)

HSP 1 Score: 83.6 bits (205), Expect = 7.590e-17
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   34 VMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            V  GH+GD+LDLSWS N FLLS G D + +LWHP R  C+  F  T  A  +S  FHP  +  FVTGG DGK+R  N
Sbjct:  154 VFAGHSGDILDLSWSKNNFLLSCGSDKTAKLWHPNREDCLCTF--TTSAVVSSIDFHPTDDRFFVTGGLDGKLRLWN 228          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: A0A077R3E4_9BASI (Wd repeat protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R3E4_9BASI)

HSP 1 Score: 83.6 bits (205), Expect = 8.240e-17
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   31 RVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            R+  GH GDVLDLSWS N FLLS   D + +LWHP R GC+  F  +  AT +S  FHP  +  FVTGG D K+R  N
Sbjct:  570 RIFSGHTGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRTGCLCTFSTS--ATVSSVDFHPTDDRFFVTGGLDCKLRLWN 645          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: A0A5C3DRX1_9BASI (Uncharacterized protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DRX1_9BASI)

HSP 1 Score: 82.0 bits (201), Expect = 2.860e-16
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   31 RVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            R+  GH+GDVLDLSWS N FLLS   D + +LWHP R  C+  F  +  A  +S  FHP  +  FVTGG DGK+R  N
Sbjct:  575 RIFAGHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSDCLCTFSTS--AIVSSIDFHPTDDRFFVTGGLDGKLRLWN 650          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: M9M194_PSEA3 (WD40 repeat-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=M9M194_PSEA3)

HSP 1 Score: 82.0 bits (201), Expect = 2.870e-16
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   31 RVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            RV  GH GDV+DLSWS N FLLS   D + +LWHP R  C+  F     A  +S  FHPR +  FVTGG DGK+R  N
Sbjct:  596 RVFAGHVGDVMDLSWSKNNFLLSCSSDKTAKLWHPNRAECLCTFSTA--AIVSSVDFHPRDDRFFVTGGLDGKLRLWN 671          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: E6ZKT8_SPORE (Uncharacterized protein n=2 Tax=Sporisorium reilianum TaxID=72558 RepID=E6ZKT8_SPORE)

HSP 1 Score: 81.6 bits (200), Expect = 3.870e-16
Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   34 VMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            V  GH GDVLDLSWS N FLLS   D + RLWHP R  C+  F  T  A  +S  FHP  +  FVTGG DGK+R  N
Sbjct:  382 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSAIVSSVDFHPVDDRFFVTGGLDGKLRLWN 456          
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Match: I2G540_USTH4 (Uncharacterized protein n=3 Tax=Ustilago TaxID=5269 RepID=I2G540_USTH4)

HSP 1 Score: 81.6 bits (200), Expect = 3.880e-16
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   31 RVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN 264
            RV   H+GDVLDLSWS N FLLS   D + +LWHP R  C+  F     AT +S  FHP  +  FVTGG DGK+R  N
Sbjct:  413 RVFAAHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSECLCTFATA--ATVSSVDFHPTDDRFFVTGGLDGKLRLWN 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156362.3675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN8_ECTSI8.990e-4791.76WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
A0A6H5KWS7_9PHAE1.230e-4690.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4P9Y9H8_9FUNG4.640e-1748.00WD40-repeat-containing domain protein (Fragment) n... [more]
A0A4U7L1T4_9BASI6.030e-1755.84Uncharacterized protein n=1 Tax=Sporisorium gramin... [more]
V5GKH9_KALBG7.590e-1753.25Uncharacterized protein n=1 Tax=Kalmanozyma brasil... [more]
A0A077R3E4_9BASI8.240e-1752.56Wd repeat protein n=1 Tax=Melanopsichium pennsylva... [more]
A0A5C3DRX1_9BASI2.860e-1651.28Uncharacterized protein n=1 Tax=Ustilago trichopho... [more]
M9M194_PSEA32.870e-1652.56WD40 repeat-containing protein n=3 Tax=Moesziomyce... [more]
E6ZKT8_SPORE3.870e-1654.55Uncharacterized protein n=2 Tax=Sporisorium reilia... [more]
I2G540_USTH43.880e-1652.56Uncharacterized protein n=3 Tax=Ustilago TaxID=526... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156362contigH-elongata_contig156362:283..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D8LMN8
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-02_002470.1
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.3433626-CDS-H-elongata_contig156362:282..5491622929922.3433626-CDS-H-elongata_contig156362:282..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156362 283..549 -
1691679209.7752306-CDS-H-elongata_contig156362:282..5491691679209.7752306-CDS-H-elongata_contig156362:282..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156362 283..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156362.3675.1prot_H-elongata_contig156362.3675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156362 283..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156362.3675.1

>prot_H-elongata_contig156362.3675.1 ID=prot_H-elongata_contig156362.3675.1|Name=mRNA_H-elongata_contig156362.3675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GELVVGGRASRVMRGHNGDVLDLSWSPNAFLLSAGRDGSLRLWHPGRLGC
VHLFPQTGPATPTSCAFHPRLENSFVTGGEDGKVRRRN*
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mRNA from alignment at H-elongata_contig156362:283..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156362.3675.1 ID=mRNA_H-elongata_contig156362.3675.1|Name=mRNA_H-elongata_contig156362.3675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig156362:283..549- (Himanthalia elongata Himel1 dioecious)
GGGGAGCTGGTGGTCGGGGGCAGAGCGTCCCGCGTGATGCGAGGGCACAA CGGGGACGTATTAGACTTGTCCTGGTCACCGAACGCCTTTCTGCTTTCTG CCGGGCGCGACGGTAGCCTTCGGCTGTGGCACCCGGGGAGACTCGGCTGC GTTCATCTGTTCCCGCAGACGGGGCCGGCGACCCCGACGTCTTGCGCCTT CCACCCTCGCCTGGAAAACTCGTTTGTCACAGGAGGGGAAGACGGAAAGG TGAGAAGGAGAAATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156362:283..549-

>mRNA_H-elongata_contig156362.3675.1 ID=mRNA_H-elongata_contig156362.3675.1|Name=mRNA_H-elongata_contig156362.3675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig156362:283..549- (Himanthalia elongata Himel1 dioecious)
GGGGAGCTGGTGGTCGGGGGCAGAGCGTCCCGCGTGATGCGAGGGCACAA
CGGGGACGTATTAGACTTGTCCTGGTCACCGAACGCCTTTCTGCTTTCTG
CCGGGCGCGACGGTAGCCTTCGGCTGTGGCACCCGGGGAGACTCGGCTGC
GTTCATCTGTTCCCGCAGACGGGGCCGGCGACCCCGACGTCTTGCGCCTT
CCACCCTCGCCTGGAAAACTCGTTTGTCACAGGAGGGGAAGACGGAAAGG
TGAGAAGGAGAAATTGAGGGGAGCTGGTGGTCGGGGGCAGAGCGTCCCGC
GTGATGCGAGGGCACAACGGGGACGTATTAGACTTGTCCTGGTCACCGAA
CGCCTTTCTGCTTTCTGCCGGGCGCGACGGTAGCCTTCGGCTGTGGCACC
CGGGGAGACTCGGCTGCGTTCATCTGTTCCCGCAGACGGGGCCGGCGACC
CCGACGTCTTGCGCCTTCCACCCTCGCCTGGAAAACTCGTTTGTCACAGG
AGGGGAAGACGGAAAGGTGAGAAGGAGAAATTGA
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