mRNA_H-elongata_contig156275.3669.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156275.3669.1
Unique NamemRNA_H-elongata_contig156275.3669.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: D7G389_ECTSI (Ras-related protein Rab n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G389_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.130e-24
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 REALNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGHPSSRRLGMKV 171
            REAL WFCDRHGFAGWFETSAK NINIDE S FLV KVLE++P SGHPS R LGMK+
Sbjct:  206 REALTWFCDRHGFAGWFETSAKQNINIDEGSRFLVEKVLERIPASGHPSGR-LGMKL 261
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: UPI0004BD37B7 (ras-related protein Rab-32 n=1 Tax=Equus przewalskii TaxID=9798 RepID=UPI0004BD37B7)

HSP 1 Score: 60.1 bits (144), Expect = 4.340e-9
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGHPSSRRLGMKV 171
            ++ FC  HGF GWFETSAK NINIDEA+ FLV  +LE       P+    G K+
Sbjct:  210 MDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILENY--QSFPNEENDGSKI 261
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 4.570e-9
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGHPSSR 153
            L+ FC  HGF GWF+TSA+LNINI++A  FLV  +LEK      P+ R
Sbjct:  140 LDQFCQEHGFIGWFDTSARLNINIEQACRFLVDNLLEKRDLLNPPAKR 187
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: F6UVE7_HORSE (Ras-related protein Rab n=2 Tax=Equus TaxID=9789 RepID=F6UVE7_HORSE)

HSP 1 Score: 60.1 bits (144), Expect = 5.070e-9
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGHPSSRRLGMKV 171
            ++ FC  HGF GWFETSAK NINIDEA+ FLV  +LE       P+    G K+
Sbjct:  246 MDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILENY--QSFPNEENDGSKI 297
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: UPI00033152C0 (ras-related protein Rab-32 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033152C0)

HSP 1 Score: 58.9 bits (141), Expect = 5.270e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLE 120
            ++ FC  HGF+GWFETSAK NINIDEA+ FLV  +LE
Sbjct:  125 MDQFCKEHGFSGWFETSAKDNINIDEAARFLVENILE 161
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: A0A4U1FQJ1_MONMO (Uncharacterized protein (Fragment) n=3 Tax=Cetacea TaxID=9721 RepID=A0A4U1FQJ1_MONMO)

HSP 1 Score: 57.8 bits (138), Expect = 6.220e-9
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVL 117
            ++ FC  HGF GWFETSAK NINIDEAS FLV  +L
Sbjct:   74 MDQFCKEHGFTGWFETSAKDNINIDEASRFLVENIL 109
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: H2YN08_CIOSA (Ras-related protein Rab n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YN08_CIOSA)

HSP 1 Score: 58.9 bits (141), Expect = 6.540e-9
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 REALNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGH 141
            ++ ++ +C   GFA WFETSAK NINIDEA+ FLV K+LE   T  H
Sbjct:  140 KQQMDTYCKEKGFAAWFETSAKANINIDEAAKFLVGKILENERTYSH 186
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: A0A443RHK7_9ACAR (Ras-related protein Rab n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443RHK7_9ACAR)

HSP 1 Score: 59.7 bits (143), Expect = 6.640e-9
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEK 123
            +N FC++H F+GWF TSAK NINIDE ++FL+ KVLEK
Sbjct:  231 MNQFCEKHQFSGWFYTSAKNNINIDECANFLISKVLEK 268
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: A0A8C5SDI4_LATLA (RAB32, member RAS oncogene family n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SDI4_LATLA)

HSP 1 Score: 57.4 bits (137), Expect = 8.280e-9
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   10 LNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKL 126
            +N FC   GFAGWFETSAK NINIDEA+ FLV  +L  L
Sbjct:   70 MNQFCKEGGFAGWFETSAKDNINIDEAARFLVENILTNL 108
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BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Match: A0A443SF80_9ACAR (Ras-related protein Rab n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SF80_9ACAR)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-9
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    7 ALNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEK 123
            +L+ FC++H FAGWF TSAK N+N+DE+++FL+ KVLEK
Sbjct:  174 SLDQFCEKHKFAGWFYTSAKDNVNVDESANFLIGKVLEK 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156275.3669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G389_ECTSI5.130e-2480.70Ras-related protein Rab n=1 Tax=Ectocarpus silicul... [more]
UPI0004BD37B74.340e-951.85ras-related protein Rab-32 n=1 Tax=Equus przewalsk... [more]
A0A6V1S8I5_HETAK4.570e-954.17Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
F6UVE7_HORSE5.070e-951.85Ras-related protein Rab n=2 Tax=Equus TaxID=9789 R... [more]
UPI00033152C05.270e-967.57ras-related protein Rab-32 n=1 Tax=Sorex araneus T... [more]
A0A4U1FQJ1_MONMO6.220e-969.44Uncharacterized protein (Fragment) n=3 Tax=Cetacea... [more]
H2YN08_CIOSA6.540e-955.32Ras-related protein Rab n=1 Tax=Ciona savignyi Tax... [more]
A0A443RHK7_9ACAR6.640e-965.79Ras-related protein Rab n=1 Tax=Dinothrombium tinc... [more]
A0A8C5SDI4_LATLA8.280e-966.67RAB32, member RAS oncogene family n=1 Tax=Laticaud... [more]
A0A443SF80_9ACAR9.520e-961.54Ras-related protein Rab n=1 Tax=Leptotrombidium de... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156275contigH-elongata_contig156275:1227..1424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.2e-19
Seed eggNOG ortholog2880.D7G389
Preferred nameRAB32
KEGG koko:K07918,ko:K07923,ko:K07976
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab32A, RAB family GTPase
Ec32 orthologEc-03_004960.1
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.5092978-CDS-H-elongata_contig156275:1226..14241622929921.5092978-CDS-H-elongata_contig156275:1226..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156275 1227..1424 -
1691679209.337784-CDS-H-elongata_contig156275:1226..14241691679209.337784-CDS-H-elongata_contig156275:1226..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156275 1227..1424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156275.3669.1prot_H-elongata_contig156275.3669.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156275 1227..1424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156275.3669.1

>prot_H-elongata_contig156275.3669.1 ID=prot_H-elongata_contig156275.3669.1|Name=mRNA_H-elongata_contig156275.3669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
REALNWFCDRHGFAGWFETSAKLNINIDEASHFLVRKVLEKLPTSGHPSS
RRLGMKVCVCICVDL*
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mRNA from alignment at H-elongata_contig156275:1227..1424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156275.3669.1 ID=mRNA_H-elongata_contig156275.3669.1|Name=mRNA_H-elongata_contig156275.3669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig156275:1227..1424- (Himanthalia elongata Himel1 dioecious)
AGGGAAGCGCTGAACTGGTTCTGCGATCGCCACGGCTTTGCGGGTTGGTT
CGAGACCTCGGCGAAGCTGAACATCAACATCGACGAAGCCAGCCATTTCC
TGGTGCGGAAGGTTCTTGAGAAACTTCCGACCTCCGGACACCCTAGCAGT
CGGCGGCTTGGAATGAAGGTGTGTGTGTGTATTTGTGTGGATTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig156275:1227..1424-

>mRNA_H-elongata_contig156275.3669.1 ID=mRNA_H-elongata_contig156275.3669.1|Name=mRNA_H-elongata_contig156275.3669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig156275:1227..1424- (Himanthalia elongata Himel1 dioecious)
AGGGAAGCGCTGAACTGGTTCTGCGATCGCCACGGCTTTGCGGGTTGGTT
CGAGACCTCGGCGAAGCTGAACATCAACATCGACGAAGCCAGCCATTTCC
TGGTGCGGAAGGTTCTTGAGAAACTTCCGACCTCCGGACACCCTAGCAGT
CGGCGGCTTGGAATGAAGGTGTGTGTGTGTATTTGTGTGGATTTATAAAG
GGAAGCGCTGAACTGGTTCTGCGATCGCCACGGCTTTGCGGGTTGGTTCG
AGACCTCGGCGAAGCTGAACATCAACATCGACGAAGCCAGCCATTTCCTG
GTGCGGAAGGTTCTTGAGAAACTTCCGACCTCCGGACACCCTAGCAGTCG
GCGGCTTGGAATGAAGGTGTGTGTGTGTATTTGTGTGGATTTATAA
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