mRNA_H-elongata_contig156064.3661.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI) HSP 1 Score: 120 bits (301), Expect = 6.930e-30 Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query: 25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
VA+FTTEY+LRFYS+VEATD++G+ LYSG+ GRL WA TDFYSWVDLASIVPFYVD+ V +DLPATQFIR
Sbjct: 42 VALFTTEYILRFYSIVEATDSSGRALYSGMKGRLVWAATDFYSWVDLASIVPFYVDMAVAQDLPATQFIR 111
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.210e-21 Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
VAVF+ EYVLRF+SV E AG+ Y G+ GR+RWA+TD YSW+DL SI+PFYVD+++ +DLPATQFIR
Sbjct: 77 VAVFSVEYVLRFWSVPETPGPAGKE-YQGLCGRVRWAVTDVYSWIDLLSILPFYVDLMLPQDLPATQFIR 145
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A7S4QVR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QVR7_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.360e-9 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 SMCKCIQVAVFTTEYVLRFYSV-VEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
S+ + + + VFT +Y+LR ++ +E++ Y+G+ GRLR+ T FYS VDLAS VPFYVD+L L ATQF+R
Sbjct: 138 SLVEVVTIFVFTVDYILRLWTADIESSK------YAGVPGRLRYVFT-FYSLVDLASTVPFYVDLLTPHISLEATQFLR 209
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A8J9X859_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X859_PHATR) HSP 1 Score: 60.1 bits (144), Expect = 1.170e-8 Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
V VF+ EYVLR Y+ + DA Y+G+ GRLR+ T F+S VDLAS VPFYVDI + DL A+ F+R
Sbjct: 125 VLVFSVEYVLRLYTA-DLEDAR----YTGLAGRLRYVPT-FFSMVDLASTVPFYVDIFLRHTDLAASSFLR 189
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: B7FUF5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUF5_PHATC) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-8 Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
V VF+ EYVLR Y+ + DA Y+G+ GRLR+ T F+S VDLAS VPFYVDI + DL A+ F+R
Sbjct: 125 VLVFSVEYVLRLYTA-DLEDAR----YTGLAGRLRYVPT-FFSMVDLASTVPFYVDIFLRHTDLAASSFLR 189
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A0L0D5N5_THETB (Ion transporter n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5N5_THETB) HSP 1 Score: 57.8 bits (138), Expect = 7.790e-8 Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
+ VA+FT EY LR ++ + Y+G GR +W + F+S VDLA+I+PFYV + + +D+ TQF+R
Sbjct: 65 VSVALFTIEYGLRMVAI------GVEDKYAGWSGRAKW-MVSFFSLVDLAAIMPFYVGLAIGDDVGTTQFVR 129
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A7S1DVH9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DVH9_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 1.020e-7 Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVED-LPATQFIR 234
+ V++F+TEY++R Y V DA P G +R+ L+ F + VDLASI+PF+VD+L +D LPA QF+R
Sbjct: 132 VTVSLFSTEYLVRLYCVTGVHDAYSDPWV----GPIRYILSPF-AVVDLASILPFFVDLLTPQDDLPAMQFLR 199
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A812SPT4_SYMPI (KCND2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SPT4_SYMPI) HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLP--ATQFIR 234
I V +FT EYV+RF + AG L R+RW T+F+S VDL SI+PFYVD+L+ + ATQ++R
Sbjct: 313 ITVCIFTVEYVIRF------STQAGSCL-----ARIRWVFTNFFSIVDLVSIMPFYVDLLIPGEQKYLATQWVR 375
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A1E7ER54_9STRA (Putative ion membrane transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER54_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 9.520e-7 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 25 VAVFTTEYVLRFYSVVEATDAAGQPLYSG-----IGGRLRWALTDFYSWVDLASIVPFYVDILVVED---LPATQFIR 234
+++F+ EYVLR ++ Q LY G I GRL++ T+FYS VDLAS VPFYVD+ + + T F+R
Sbjct: 130 ISIFSIEYVLRVWTA----PLENQELYGGSSAGIIVGRLKYIFTNFYSIVDLASTVPFYVDVFLFTSSNVIGTTSFLR 203
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A812KXJ3_9DINO (Shal protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KXJ3_9DINO) HSP 1 Score: 54.3 bits (129), Expect = 1.310e-6 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVV--EDLPATQFIRWV 240
+ V +FT EYVLRF + AG L R+ W T+F+S VDL SI+PFY DIL+ ++ ATQ++R V
Sbjct: 303 VTVCIFTFEYVLRF------STRAGSCL-----ARITWVFTNFFSIVDLVSIMPFYADILIPGRQNYLATQWVRVV 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156064.3661.1 >prot_H-elongata_contig156064.3661.1 ID=prot_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp MSMCKCIQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYback to top mRNA from alignment at H-elongata_contig156064:944..1192+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156064.3661.1 ID=mRNA_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig156064:944..1192+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156064:944..1192+ >mRNA_H-elongata_contig156064.3661.1 ID=mRNA_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig156064:944..1192+ (Himanthalia elongata Himel1 dioecious)back to top |