prot_H-elongata_contig156050.3660.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156050.3660.1
Unique Nameprot_H-elongata_contig156050.3660.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length188
Homology
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BLAST of mRNA_H-elongata_contig156050.3660.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.020e-14
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 0 
Query:   55 AVPCSTSTEIMVVGNTSEAESLAEALLCEGAGSFEVHWHGDVALSRPIFVSNGTSLNVTGFSIDADDADAGTAITGNHTDRLVYVDHGSSVMFTRLTFLDG 155
            A  CS + +  VV  T EA  L+EALLC GAG FEV W G+V L RPIF+SNG+ + VTG S      D G A+       L  V+ GS++    L+ + G
Sbjct:   21 AATCSVAVDARVVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASAGEAVIDGGDAVV------LFNVNDGSTLELDALSLVRG 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156050.3660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE4.020e-1443.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 79..187
e-value: 1.8E-5
score: 25.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..52
NoneNo IPR availableTMHMMTMhelixcoord: 31..53
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 89..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156050contigH-elongata_contig156050:832..1395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156050.3660.1mRNA_H-elongata_contig156050.3660.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156050 832..1395 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156050.3660.1 ID=prot_H-elongata_contig156050.3660.1|Name=mRNA_H-elongata_contig156050.3660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
SNALHHNNTNNNSPPHRSLIGYKMEFPHHHQLVKGCTLQLLLLLLLLLYV
VLIDAVPCSTSTEIMVVGNTSEAESLAEALLCEGAGSFEVHWHGDVALSR
PIFVSNGTSLNVTGFSIDADDADAGTAITGNHTDRLVYVDHGSSVMFTRL
TFLDGDRALTFKGGSYAEIKDCTFLNNDGASSFYGGW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence