mRNA_H-elongata_contig155962.3656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155962.3656.1
Unique NamemRNA_H-elongata_contig155962.3656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155962.3656.1 vs. uniprot
Match: D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 8.500e-53
Identity = 99/143 (69.23%), Postives = 109/143 (76.22%), Query Frame = 1 
Query:    1 PPSPTGGREVWMGTDDVPSVGAGGGWEEEEGAEGLFHDAQDVPIPTLSVYDPERLWEYVERPLMVYMPLRKLVVKPPTVSTTMDIEELPVRCLVHRTLAGTEVATRLVDSPAERYRAAFAFIYMVTAESQEHYKQVCTCLFMA 429
            PP+  G RE  +G  D      G         +GLFHDAQDVP+PTLSVYDPERLWEYVERPLMVYMPLRKL+ KPP VS   +I+ELPVRCLVHRTLAGTEVA RLVD+PAERYRA+FAFIYMV+AESQEHYKQ    L  A
Sbjct:  119 PPTGHGPREFTLGAMD-----GGEXXXXXXXXDGLFHDAQDVPMPTLSVYDPERLWEYVERPLMVYMPLRKLLAKPPAVSGPTNIDELPVRCLVHRTLAGTEVAARLVDTPAERYRASFAFIYMVSAESQEHYKQTVRPLIRA 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155962.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ1_ECTSI8.500e-5369.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155962contigH-elongata_contig155962:23..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue4.9e-46
Seed eggNOG ortholog2880.D8LAZ1
KEGG koko:K20307,ko:K20476
EggNOG free text desc.early endosome to Golgi transport
EggNOG OGsKOG1931@1,KOG1931@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.6520407-CDS-H-elongata_contig155962:22..2471622929919.6520407-CDS-H-elongata_contig155962:22..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155962 23..247 +
1691679208.5603402-CDS-H-elongata_contig155962:22..2471691679208.5603402-CDS-H-elongata_contig155962:22..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155962 23..247 +
1622929919.664841-CDS-H-elongata_contig155962:797..10041622929919.664841-CDS-H-elongata_contig155962:797..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155962 798..1004 +
1691679208.5733793-CDS-H-elongata_contig155962:797..10041691679208.5733793-CDS-H-elongata_contig155962:797..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155962 798..1004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155962.3656.1prot_H-elongata_contig155962.3656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155962 23..1004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155962.3656.1

>prot_H-elongata_contig155962.3656.1 ID=prot_H-elongata_contig155962.3656.1|Name=mRNA_H-elongata_contig155962.3656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
PPSPTGGREVWMGTDDVPSVGAGGGWEEEEGAEGLFHDAQDVPIPTLSVY
DPERLWEYVERPLMVYMPLRKLVVKPPTVSTTMDIEELPVRCLVHRTLAG
TEVATRLVDSPAERYRAAFAFIYMVTAESQEHYKQVCTCLFMA*
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mRNA from alignment at H-elongata_contig155962:23..1004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155962.3656.1 ID=mRNA_H-elongata_contig155962.3656.1|Name=mRNA_H-elongata_contig155962.3656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig155962:23..1004+ (Himanthalia elongata Himel1 dioecious)
CCCCCGAGCCCCACGGGGGGGCGCGAGGTTTGGATGGGGACCGATGACGT
TCCGTCGGTAGGGGCGGGAGGGGGGTGGGAGGAAGAAGAGGGCGCTGAGG
GCCTGTTTCACGACGCGCAGGACGTGCCCATACCAACGCTGAGCGTGTAC
GACCCCGAGAGGCTGTGGGAGTACGTGGAACGACCGTTGATGGTGTACAT
GCCCCTAAGGAAGCTCGTCGTAAAGGTGCAGCTACGAGCATTCGTTTTCG
GGAGTGTCACGGCTGCCGTGCGGTGTGTGTGCGTGTGTGTATGTTACATG
AATATGTATATGTATCATGTACACAACATATCACGCCATTGGCAGGTTTA
GGGTTTCTTATTGTGTCGAAGGCTAGTGATTGCTGGTAATGAGCGTGATG
ATTGTTGATCATGATGCCCGCGGTGGCGATGATCCTGGCCGGAGCGAGAG
CGACGCGACGCGATACCCTGGTGTCGGGGAGACACGGGCAACAGGTACGG
ACACGCGGGTCGCTCATTCGAAAAATACGCGAATCCCTCGTAAGGTGCGA
ACGCTAGTGCCCCACTTCACGAACGCCTCTTCTGTAGTTTAAGTGAACTG
CTGTTGGACCTGGCTTTGCCCCGCGCTTCGTTGTGTGCATGCGTCCCCTC
GGTGTATGTTGAGTCAAGCCGCAACTAAGGGGCATGTGCTGTTCGGTCTC
CCCCCCACACCTCTCCTTTCCGTCTCTCTTTGCCTCCCACCTCCGTGTTG
CCGACACCATATCCTCTGCCGAAAGCCCCCCACTGTTAGCACCACCATGG
ACATCGAGGAGCTTCCCGTTCGATGCCTGGTCCATCGGACCCTGGCGGGG
ACGGAGGTGGCGACGAGGCTCGTGGATTCGCCGGCGGAGCGCTACCGGGC
GGCTTTCGCGTTCATCTACATGGTCACCGCGGAGTCCCAGGAGCACTACA
AGCAGGTGTGTACTTGTCTGTTTATGGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155962:23..1004+

>mRNA_H-elongata_contig155962.3656.1 ID=mRNA_H-elongata_contig155962.3656.1|Name=mRNA_H-elongata_contig155962.3656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig155962:23..1004+ (Himanthalia elongata Himel1 dioecious)
CCCCCGAGCCCCACGGGGGGGCGCGAGGTTTGGATGGGGACCGATGACGT
TCCGTCGGTAGGGGCGGGAGGGGGGTGGGAGGAAGAAGAGGGCGCTGAGG
GCCTGTTTCACGACGCGCAGGACGTGCCCATACCAACGCTGAGCGTGTAC
GACCCCGAGAGGCTGTGGGAGTACGTGGAACGACCGTTGATGGTGTACAT
GCCCCTAAGGAAGCTCGTCGTAAAGCCCCCGAGCCCCACGGGGGGGCGCG
AGGTTTGGATGGGGACCGATGACGTTCCGTCGGTAGGGGCGGGAGGGGGG
TGGGAGGAAGAAGAGGGCGCTGAGGGCCTGTTTCACGACGCGCAGGACGT
GCCCATACCAACGCTGAGCGTGTACGACCCCGAGAGGCTGTGGGAGTACG
TGGAACGACCGTTGATGGTGTACATGCCCCTAAGGAAGCTCGTCGTAAAG
CCCCCCACTGTTAGCACCACCATGGACATCGAGGAGCTTCCCGTTCGATG
CCTGGTCCATCGGACCCTGGCGGGGACGGAGGTGGCGACGAGGCTCGTGG
ATTCGCCGGCGGAGCGCTACCGGGCGGCTTTCGCGTTCATCTACATGGTC
ACCGCGGAGTCCCAGGAGCACTACAAGCAGGTGTGTACTTGTCTGTTTAT
GGCGTGACCCCCCACTGTTAGCACCACCATGGACATCGAGGAGCTTCCCG
TTCGATGCCTGGTCCATCGGACCCTGGCGGGGACGGAGGTGGCGACGAGG
CTCGTGGATTCGCCGGCGGAGCGCTACCGGGCGGCTTTCGCGTTCATCTA
CATGGTCACCGCGGAGTCCCAGGAGCACTACAAGCAGGTGTGTACTTGTC
TGTTTATGGCGTGA
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