mRNA_H-elongata_contig15584.3651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15584.3651.1
Unique NamemRNA_H-elongata_contig15584.3651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 7.150e-44
Identity = 89/133 (66.92%), Postives = 98/133 (73.68%), Query Frame = 3 
Query:  609 RVNELRTAKSLPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDID----------HEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+NELR AK+ P+L+LRL+VEGGGCSGFQYKFSLE+                               HEFERDGAVLVVD TSLEFVKGATVDFEEDMMRSAFAV+NNPVSESACGCGSSFALKNF+ NPA+D
Sbjct:  105 RLNELRQAKAQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 237
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A4D9DG01_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DG01_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.190e-35
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 3 
Query:  609 RVNELRTAKSLPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+  L+      NL+LRL+VEGGGCSGF Y F++E+           VE+DD+      + R+GA +VVD  SLEFV+G+TVDF EDMMRSAFAVV+NP+SESACGCGSSFA+KNF+ NPAID
Sbjct:   16 RIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMED---------GPVEDDDK-----VYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAIKNFEKNPAID 124
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A7S2RUW2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUW2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.950e-34
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 3 
Query:  609 RVNELRTAKSLPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+ EL+   S   ++LRLTVEGGGCSGFQY+F ++          SE  +++ED +   FERDGA +V+D  SLEFV GATVDF E+M+RS+F VVNNP SESACGCGSSFALK F +NPA+D
Sbjct:   50 RILELQKESSSEYVKLRLTVEGGGCSGFQYQFHMD----------SEPVDEEEDSV---FERDGASVVIDEASLEFVTGATVDFVEEMIRSSFVVVNNPNSESACGCGSSFALKAFSDNPAVD 159
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.090e-34
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 3 
Query:  609 RVNELRTAKSLPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+  L+      NL+LRL+VEGGGCSGF Y F++E+           VE+DD+      + R+GA +VVD  SLEFV+G+TVDF EDMMRSAFAVV+NP+SESACGCGSSFA+KNF+ NPAID
Sbjct:   85 RIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMED---------GPVEDDDK-----VYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A7S3NJQ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJQ0_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.090e-34
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = 3 
Query:  651 RLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            RLRL V+GGGCSGFQY F+ E  TA    D            D  F RDG  +VVD TSLEFV+GATVD++E+M+RSAF V+NNP SESACGCGSSFALKNFD+NPAID
Sbjct:   50 RLRLGVDGGGCSGFQYTFTTEAATAKLAED------------DSVFSRDGHDVVVDETSLEFVRGATVDYQEEMIRSAFVVINNPNSESACGCGSSFALKNFDSNPAID 146
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A835ZPC5_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC5_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.760e-32
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 3 
Query:  609 RVNELRTAKS--LPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+N+LR  +    P LRLRL+VEGGGCSGFQY F++++ T  +  D  ++           FERDGA +V+D  SL FVKGATVDF++DMMR+AF+V+NNP SE+ACGCGSSFA+K F+ NPA D
Sbjct:  120 RINQLRKRRGGDAP-LRLRLSVEGGGCSGFQYTFTMDDGTGDEEIDTPDII----------FERDGAQVVIDEVSLGFVKGATVDFQQDMMRAAFSVLNNPNSENACGCGSSFAVKAFEANPARD 233
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A7S2G7Q7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7Q7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.260e-31
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 3 
Query:  642 PNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            P+  LRL+VEGGGCSGFQY F L         D SE+  +     D  FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAVVNNP SESACGCGSSFALK+F +NPA+D
Sbjct:    8 PSKYLRLSVEGGGCSGFQYSFEL---------DGSELGPE-----DLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 105
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: A0A7S2CX78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CX78_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.670e-31
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 3 
Query:  630 AKSLPNLRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDDIDHEFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            A + P+  LRL+VEGGGCSGFQY F L         D SE+  +     D  FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAVVNNP SESACGCGSSFALK+F +NPA+D
Sbjct:   60 ADTSPSKYLRLSVEGGGCSGFQYSFEL---------DGSELGPE-----DLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 161
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: D7G8E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E7_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.430e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:  783 EFERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            EFERDGAVLVVD TSLEFVKGATVDFEEDMMRSAFAV+NNPVSESACGCGSSFALKNF+ NPA+D
Sbjct:   82 EFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 146
[Close]
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Match: B8BT66_THAPS (Fe-S_biosyn domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT66_THAPS)

HSP 1 Score: 120 bits (301), Expect = 5.100e-28
Identity = 65/130 (50.00%), Postives = 94/130 (72.31%), Query Frame = 3 
Query:  609 RVNELRTAKSLPN-LRLRLTVEGGGCSGFQYKFSLEETTATKGSDASEVENDDEDD--IDHE----FERDGAVLVVDNTSLEFVKGATVDFEEDMMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID 977
            R+ +L + +  P+ + LRL V+ GGCSGFQYKF L     ++ +D +    DDE+D  ID +    F +DG  +VVD TSLE ++G+T+D+ ++M+RS+FAV++NP SESACGCGSSFA+KNF+ NPA+D
Sbjct:   46 RIKQLASTRPNPDSIYLRLYVDAGGCSGFQYKFLL----LSEDNDMNNSLEDDEEDGAIDPDEDIIFVKDGMRVVVDQTSLELLRGSTIDYVQEMIRSSFAVMSNPQSESACGCGSSFAVKNFETNPALD 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15584.3651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCK6_9PHAE7.150e-4466.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DG01_9STRA5.190e-3558.54Fe-S_biosyn domain-containing protein n=1 Tax=Nann... [more]
A0A7S2RUW2_9STRA3.950e-3458.54Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
W7UC88_9STRA4.090e-3458.54Iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
A0A7S3NJQ0_9STRA5.090e-3464.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835ZPC5_9STRA5.760e-3256.00Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A7S2G7Q7_9STRA3.260e-3158.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CX78_9STRA6.670e-3157.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G8E7_ECTSI1.430e-2992.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8BT66_THAPS5.100e-2850.00Fe-S_biosyn domain-containing protein n=1 Tax=Thal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15584contigH-elongata_contig15584:5078..7699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog2880.D7G8E7
Preferred nameISA2
KEGG koko:K15199,ko:K22063,ko:K22072
GOsGO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010467,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019538,GO:0019752,GO:0022607,GO:0031163,GO:0031974,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0316@1,KOG1119@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size1820
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15584.3651.1prot_H-elongata_contig15584.3651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15584 6749..6859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.0874376-UTR-H-elongata_contig15584:5077..58581622929919.0874376-UTR-H-elongata_contig15584:5077..5858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 5078..5858 +
1691679208.295147-UTR-H-elongata_contig15584:5077..58581691679208.295147-UTR-H-elongata_contig15584:5077..5858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 5078..5858 +
1622929919.1038177-UTR-H-elongata_contig15584:6311..63811622929919.1038177-UTR-H-elongata_contig15584:6311..6381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6312..6381 +
1691679208.3075044-UTR-H-elongata_contig15584:6311..63811691679208.3075044-UTR-H-elongata_contig15584:6311..6381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6312..6381 +
1622929919.118689-UTR-H-elongata_contig15584:6730..67481622929919.118689-UTR-H-elongata_contig15584:6730..6748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6731..6748 +
1691679208.3165522-UTR-H-elongata_contig15584:6730..67481691679208.3165522-UTR-H-elongata_contig15584:6730..6748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6731..6748 +
1622929919.1516337-UTR-H-elongata_contig15584:6859..76991622929919.1516337-UTR-H-elongata_contig15584:6859..7699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6860..7699 +
1691679208.3367937-UTR-H-elongata_contig15584:6859..76991691679208.3367937-UTR-H-elongata_contig15584:6859..7699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15584 6860..7699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.135416-CDS-H-elongata_contig15584:6748..68591622929919.135416-CDS-H-elongata_contig15584:6748..6859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15584 6749..6859 +
1691679208.3258896-CDS-H-elongata_contig15584:6748..68591691679208.3258896-CDS-H-elongata_contig15584:6748..6859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15584 6749..6859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15584.3651.1

>prot_H-elongata_contig15584.3651.1 ID=prot_H-elongata_contig15584.3651.1|Name=mRNA_H-elongata_contig15584.3651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MMRSAFAVVNNPVSESACGCGSSFALKNFDNNPAID*
back to top

mRNA from alignment at H-elongata_contig15584:5078..7699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15584.3651.1 ID=mRNA_H-elongata_contig15584.3651.1|Name=mRNA_H-elongata_contig15584.3651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2622bp|location=Sequence derived from alignment at H-elongata_contig15584:5078..7699+ (Himanthalia elongata Himel1 dioecious)
AACAAAATCGGATAAAAAACAACGGCGGCGCCTCCAGCGGGGGTCCTCAC
TAGCTGGGGGGACGTTAGCGGCGAAGCCGAGCGCCTCCGCCTAGTAACCG
ATCAACAGGGTGCGTCAGTAACCTGGTTACTCAACCTATATACAGCTCTA
GCCAAAATGCAATTCGAAACGCTTGGCTTGCTTAACGTACATCTCCATTG
TTTTCGAGGGTTTCGTTTCTAAATGAATATAATTTTCCCAATGCTAGCAG
GATTTGTTTTCAGCGGACGGGACGAGAAAAGCTGGATCTCCGGGAAATTG
CGACTCGTGTATCTTTCTTGTGATATAGACATGACTAGGAAATGCCTTCT
TCTTCAAAGCTGTGCGGCAAGCCCAACGCTGTCGCGCTACTTTTGCCAAG
CCATCATTCTAACAAAGAAAAAGACGAGGTTGCGGTTGGATCGAGCGGAA
ATACCCCGAAACTTCCTCGACAATGATTTCATTCGTCGCGACTCCAGTTC
CACACGCGTGCCATATATCCTTGTCGAGGGCGTTTACATATGTCCGTCCC
TTGTGTTTTTCCACTTTGTTGTCTGCCTGGCCGCGACAATTGAAAAACAC
GAAACTAGAGGGTGAACGAGCTTCGAACCGCGAAATCGCTGCCGAATTTG
AGATTGCGGCTAACGGTCGAGGGCGGTGGATGCTCCGGGTTTCAGTACAA
GTTTTCATTGGAGGAAACGACGGCAACCAAGGGAAGCGATGCGAGCGAGG
TAGAGAACGACGACGAGGACGACATCGATCAGTGAGTTCGGGTGGTCGTG
TGAAACACATTTTTTTTTGCTTTGGTGCAGCAGCCTCAGTGGAATCCGCC
CAAGAACGCTCCTCTACCCAAGAGTCGAACTGACGCAAACCGACAAGCGG
GTTTTGTTATCCATGGCGGCCGACCGGCCATGGGCTAGCGGGGGACAGAG
CGCCCCAATTTCTCTCCGCAATGCGACACCATGGACCCTTAGAGCGAAAA
GGGATATATACCTAAGGGTTTCTAATCCCGCGATCAAGATGATCAACGGA
CACCAAATGTCTTCGTAGGATCCCCTCTCCTACTAAAAGAGAGCTGATAC
GGTTCTGGCTTTCTTTGGCTGGTGCGCCTTGACACGGACAACAGTGGAAT
AAAACGCTGAAGCACCTTTCTTGGCGCTCTTTCCGATTCCTCTTCTCCAC
CCTGTTTTGGTTGCCACCGCACGTCCTCTTGCAGTGAGTTCGAACGAGAC
GGAGCTGTGTTGGTCGTGGATAACACATCGCTTGAATTCGTCAAGGGCGC
GACGGTGAGCGACCACCTCCTCCCCAGGTCCGCCCCCCTTAACTGCTATA
CGGTGGAATAAAAGTAATGCGTCGCGTCTGGAGCCCACGCCCAGTCCCCG
GAAATTTAAACGGGTTTCCTTGCTGCGCAAGTCAGCGTATGGCTATGCAT
TAGTACGTATGCACGCCCCTATCCTGATGGAGGACTCTGATTCATTTTTC
CTGAAGGCAGACCCACTTCCACAGCTCCCCCCACAGCTGTACCGATTGCC
TCGTTCTCGACATCATATTCCTTCCCCAACCGTTTCGTTTCTGTCGCGTG
ATGGCCGCCACTGTCATGTATATTATATCGCATCATCGATCCGGGTGATC
AAGGTGGACTTTGAGGAGGACATGATGCGAAGTGCGTTTGCCGTCGTAAA
CAACCCGGTGTCGGAAAGTGCTTGCGGTTGCGGAAGCTCTTTCGCGCTCA
AGAACTTCGATAACAACCCCGCGATAGACTAACGAAAGTACCCAAGGCTC
GCTCGTACAGGGCTGATGGCCGCAAAATCGACTGCGTCCCGTGCTTTGGT
TGCCAAAGCGGAACATTCGTTTAGGGGAGGGGAGGGTGCGAGCGGGAAAA
GGCGTGATCGAATGGCGTCACTGAAGCAGTCATCGAAAATATCATGGGGC
GTACCAGTTAAGACATCGTTTTTTCTTTTAAAACACCGCAACGGATCGTT
CAGGGTATAATCGTTATTTCGGGTATCTTCCTCATCGTCCTAATAGAAAA
TTCGCTCGTCCTCGATTTTTTGTGTACGAAATATGCATTATGTAGTGTGT
TCTATCTTTAATATGTTCTGAAATAAGGGTCTGGTTTTTCGTTTTAATTG
AAGGGTCTCAGTTCAAGACATGGTAGATTACGTCTGCTGTCGTCTAGGCC
AACGTCCTTCAGTGTCGTATCCGTGCACAACGTACCTATCCCAAAAATAG
TGGACGCAAAATTCGGTTCACCTGTGTTTGAGAATATGAACGATCCACGA
GGCTGTTTTTTTGACCCAACGTATTGTTCTTTTTCGTCGTACGCGCAACA
ACCTCACTCGTGATGATTGCGTCCTGGGTTACCGAGCTCAAACTGCCGCG
TGTTTTTTTCGTGGGCGGATCGACGCATCGAGAAGCAACGGCGGAAAATA
GTCGAGTTTTGCCATCAAGCTGAGTGCGTCGTTTCTATTCCGTCGATGAC
TAATATAATTGAGGCAGATTGTTTCAGCCATCTTCCGACACCTTCGAGGT
GATACTTCTGCACCTCCTGGGCACTAATATTACCCACAAGCGGTGTTTAC
GACAAAATTTTGGGTATCGTGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15584:5078..7699+

>mRNA_H-elongata_contig15584.3651.1 ID=mRNA_H-elongata_contig15584.3651.1|Name=mRNA_H-elongata_contig15584.3651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig15584:5078..7699+ (Himanthalia elongata Himel1 dioecious)
ATGATGCGAAGTGCGTTTGCCGTCGTAAACAACCCGGTGTCGGAAAGTGC
TTGCGGTTGCGGAAGCTCTTTCGCGCTCAAGAACTTCGATAACAACCCCG
CGATAGACTAAATGATGCGAAGTGCGTTTGCCGTCGTAAACAACCCGGTG
TCGGAAAGTGCTTGCGGTTGCGGAAGCTCTTTCGCGCTCAAGAACTTCGA
TAACAACCCCGCGATAGACTAA
back to top