mRNA_H-elongata_contig155653.3646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155653.3646.1
Unique NamemRNA_H-elongata_contig155653.3646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Match: D7FUW9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.720e-10
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   37 LACHDGVEAAVMAYMRDGGIDLEMKEKK-RTPLLSACTNGHLNVAKVLISAGANIHACDDEDFTCLHAAAMGG 252
            LA   G   AV+A++    IDLE K    +TPL+  C  GH   A++LI  GA++HA DD DF CLHAA   G
Sbjct:  106 LASKCGNNGAVVAFLSSCSIDLEHKSATGKTPLVEVCWEGHKRTAELLIREGADVHAKDDADFCCLHAATYQG 178
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BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Match: A0A816GSA0_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816GSA0_ADIRI)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  115 KKRTPLLSACTNGHLNVAKVLISAGANIHACDDEDFTCLHA 237
            + +TPL  AC  GHL++A VLI AGAN +  D+ED TCLHA
Sbjct:  241 RNQTPLFYACIEGHLDIALVLIRAGANAYHLDNEDQTCLHA 281
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BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Match: A0A815B6F4_ADIRI (Hypothetical protein n=5 Tax=Adineta ricciae TaxID=249248 RepID=A0A815B6F4_ADIRI)

HSP 1 Score: 52.8 bits (125), Expect = 6.130e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  115 KKRTPLLSACTNGHLNVAKVLISAGANIHACDDEDFTCLHA 237
            + +TPL  AC  GHL++A VLI AGAN +  D+ED TCLHA
Sbjct:  241 RNQTPLFYACIEGHLDIALVLIRAGANAYHLDNEDQTCLHA 281
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BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Match: UPI00201EB84D (uncharacterized protein LOC124125735 n=7 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EB84D)

HSP 1 Score: 50.1 bits (118), Expect = 5.680e-5
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   34 HLACHDGVEAAVMAYMRDGGIDLEM--KEKKRTPLLSACTNGHLNVAKVLISAGANIHACDDEDFTCLHAAAM 246
            H AC  G E  V+  + D G+++E    + KRTPL+ AC +G L  AK L    A +   D+ +F+CLH AAM
Sbjct:  975 HRACMTG-ETNVVKILLDHGMNIEDVGSKFKRTPLMCACRHGKLETAKELKRRHAVLDIVDENNFSCLHLAAM 1046
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BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Match: A0A818T6Z1_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818T6Z1_9BILA)

HSP 1 Score: 49.7 bits (117), Expect = 7.520e-5
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   28 LFHLACHDGVEAAVMAYMRDGGIDLEMKEKKRTPLLSACTNGHLNVAKVLISAGANIHACDDEDFTCLHA 237
            + H   +  V+  ++  M + G       K +TPL  AC  GH++VA +L+ AGAN +  D+++ TCLHA
Sbjct:  317 IIHELLNSSVDDEIILKMLNQG-----DHKNQTPLFYACIEGHIDVALILLHAGANAYHLDNDNQTCLHA 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155653.3646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUW9_ECTSI9.720e-1046.58Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A816GSA0_ADIRI5.530e-658.54Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A815B6F4_ADIRI6.130e-658.54Hypothetical protein n=5 Tax=Adineta ricciae TaxID... [more]
UPI00201EB84D5.680e-541.10uncharacterized protein LOC124125735 n=7 Tax=Halio... [more]
A0A818T6Z1_9BILA7.520e-535.71Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155653contigH-elongata_contig155653:206..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D7FUW9
Preferred namemlt-4
GOsGO:0000278,GO:0000281,GO:0000902,GO:0000904,GO:0000910,GO:0001508,GO:0002028,GO:0003008,GO:0003254,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006810,GO:0006888,GO:0006892,GO:0006893,GO:0006996,GO:0007009,GO:0007010,GO:0007016,GO:0007049,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007528,GO:0008092,GO:0008104,GO:0008150,GO:0009653,GO:0009893,GO:0009986,GO:0009987,GO:0010035,GO:0010038,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010649,GO:0010650,GO:0010765,GO:0010959,GO:0010960,GO:0012505,GO:0014704,GO:0014731,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016328,GO:0016528,GO:0016529,GO:0018996,GO:0019222,GO:0019226,GO:0019228,GO:0022008,GO:0022402,GO:0022404,GO:0022407,GO:0022409,GO:0022607,GO:0022898,GO:0023052,GO:0030016,GO:0030017,GO:0030018,GO:0030030,GO:0030054,GO:0030154,GO:0030155,GO:0030182,GO:0030315,GO:0030424,GO:0030425,GO:0030507,GO:0030674,GO:0031175,GO:0031594,GO:0031674,GO:0032026,GO:0032386,GO:0032388,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032507,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0033036,GO:0033157,GO:0033267,GO:0033268,GO:0034110,GO:0034112,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035637,GO:0036477,GO:0042221,GO:0042303,GO:0042383,GO:0042391,GO:0042395,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043034,GO:0043194,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043267,GO:0043269,GO:0043270,GO:0043271,GO:0043292,GO:0044085,GO:0044091,GO:0044092,GO:0044093,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045185,GO:0045202,GO:0045211,GO:0045296,GO:0045760,GO:0045785,GO:0045838,GO:0046907,GO:0048193,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050808,GO:0050839,GO:0050877,GO:0050896,GO:0051049,GO:0051050,GO:0051051,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051235,GO:0051301,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0055065,GO:0055080,GO:0060090,GO:0060255,GO:0060341,GO:0061024,GO:0061564,GO:0061640,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070887,GO:0071241,GO:0071248,GO:0071286,GO:0071702,GO:0071705,GO:0071709,GO:0071840,GO:0071944,GO:0072507,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0090087,GO:0090150,GO:0090313,GO:0090314,GO:0090316,GO:0097060,GO:0097447,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098876,GO:0098900,GO:0098901,GO:0098902,GO:0099080,GO:0099081,GO:0099512,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1900825,GO:1900827,GO:1901016,GO:1901017,GO:1901379,GO:1901380,GO:1902259,GO:1902260,GO:1902305,GO:1902307,GO:1903047,GO:1903533,GO:1903817,GO:1903827,GO:1903829,GO:1904062,GO:1904063,GO:1904064,GO:1904181,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2000649,GO:2000651,GO:2001257,GO:2001258,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.556213-CDS-H-elongata_contig155653:205..4721622929918.556213-CDS-H-elongata_contig155653:205..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155653 206..472 -
1691679208.08416-CDS-H-elongata_contig155653:205..4721691679208.08416-CDS-H-elongata_contig155653:205..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155653 206..472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.568781-UTR-H-elongata_contig155653:472..4811622929918.568781-UTR-H-elongata_contig155653:472..481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155653 473..481 -
1691679208.0963535-UTR-H-elongata_contig155653:472..4811691679208.0963535-UTR-H-elongata_contig155653:472..481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155653 473..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155653.3646.1prot_H-elongata_contig155653.3646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155653 206..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155653.3646.1

>prot_H-elongata_contig155653.3646.1 ID=prot_H-elongata_contig155653.3646.1|Name=mRNA_H-elongata_contig155653.3646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSSRQVLFHLACHDGVEAAVMAYMRDGGIDLEMKEKKRTPLLSACTNGHL
NVAKVLISAGANIHACDDEDFTCLHAAAMGGCLDRGSVL
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mRNA from alignment at H-elongata_contig155653:206..481-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155653.3646.1 ID=mRNA_H-elongata_contig155653.3646.1|Name=mRNA_H-elongata_contig155653.3646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig155653:206..481- (Himanthalia elongata Himel1 dioecious)
AATCCTCCAATGAGCTCCCGACAGGTCCTATTCCACCTCGCTTGTCACGA
TGGTGTGGAAGCAGCGGTCATGGCCTACATGCGGGACGGTGGCATCGATC
TCGAGATGAAAGAAAAAAAACGCACTCCTCTGCTCTCTGCCTGCACCAAT
GGCCACCTGAACGTTGCCAAGGTGTTGATATCGGCGGGAGCCAACATTCA
CGCCTGCGATGACGAAGACTTCACCTGTCTGCATGCGGCCGCTATGGGTG
GGTGCCTCGATCGTGGGTCTGTTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig155653:206..481-

>mRNA_H-elongata_contig155653.3646.1 ID=mRNA_H-elongata_contig155653.3646.1|Name=mRNA_H-elongata_contig155653.3646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig155653:206..481- (Himanthalia elongata Himel1 dioecious)
ATGAGCTCCCGACAGGTCCTATTCCACCTCGCTTGTCACGATGGTGTGGA
AGCAGCGGTCATGGCCTACATGCGGGACGGTGGCATCGATCTCGAGATGA
AAGAAAAAAAACGCACTCCTCTGCTCTCTGCCTGCACCAATGGCCACCTG
AACGTTGCCAAGGTGTTGATATCGGCGGGAGCCAACATTCACGCCTGCGA
TGACGAAGACTTCACCTGTCTGCATGCGGCCGCTATGGGTGGGTGCCTCG
ATCGTGGGTCTGTTCTAATGAGCTCCCGACAGGTCCTATTCCACCTCGCT
TGTCACGATGGTGTGGAAGCAGCGGTCATGGCCTACATGCGGGACGGTGG
CATCGATCTCGAGATGAAAGAAAAAAAACGCACTCCTCTGCTCTCTGCCT
GCACCAATGGCCACCTGAACGTTGCCAAGGTGTTGATATCGGCGGGAGCC
AACATTCACGCCTGCGATGACGAAGACTTCACCTGTCTGCATGCGGCCGC
TATGGGTGGGTGCCTCGATCGTGGGTCTGTTCTA
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