mRNA_H-elongata_contig155473.3634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155473.3634.1
Unique NamemRNA_H-elongata_contig155473.3634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.370e-43
Identity = 110/229 (48.03%), Postives = 139/229 (60.70%), Query Frame = 1 
Query:    1 STSVELLGGCVARGASLHGCPGVVLVSAKGQALWVAPRRQES---------GRAVDLDA--------PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLD-GVQSGGGAAVSGDIDIAIAEVCG-------AFADKGFLTLAGLEILDGRGQYSPAFACPRQLVHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCELQVS 612
            S+   L GGCV  G +L GCPGVVL+S++GQA+WVAPR  ES         G AVDL          PG  T      +E WR+AL++ GL++ E G+ MD AR  V  LL    Q  G  A+S   D+  A V G       A   KG +  AGLE+L+G  ++  AFA P QLVHLALREKARR R L+R L+DAG WG +++ RAA++E GEK+AAA+RLCELQ S
Sbjct:  444 SSRTALSGGCVGGGGALLGCPGVVLLSSQGQAVWVAPRHTESPXXXXXATAGLAVDLGPRPEVVAAIPGNDT------SEEWRMALVEGGLRAFEDGETMDPARLAVGSLLGRAAQETGRGAMSSTEDLDSAIVWGWEGPKPVAARGKGHIQ-AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLLDAGAWGASSVGRAALSECGEKVAAASRLCELQDS 665
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BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.170e-38
Identity = 97/201 (48.26%), Postives = 124/201 (61.69%), Query Frame = 1 
Query:   46 SLHGCPGVVLVSAKGQALWVAPRRQES-------GRAVDLDA--PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLDGV--QSGGGAAVSGD-IDIAIAEVCGAFADKGFLTLAGLEILDGRGQYSPAFACPRQLVHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCELQVS 612
            +L GCPGVVL+S +GQA+WVAPR  ES       G AVDL      F +      +E W++AL++ GL++ E GK MD  R  +  LL     ++G GA  S + ID AI               AGLE+L+G  ++  AFA P QLVHLALREKARR R L+R LMDAG WG  ++ RAA++E GEK+AAA+RLCELQ S
Sbjct:  412 ALLGCPGVVLLSRQGQAVWVAPRHTESPAAAAAAGLAVDLGPCPEVFASIPGNDTSEEWKMALVEGGLRAFEEGKTMDPTRLAMGSLLGRAAQETGRGAMASTENIDSAIVR-------------AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGALSVGRAALSECGEKVAAASRLCELQDS 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMM2_ECTSI4.370e-4348.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHH9_9PHAE2.170e-3848.26Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155473contigH-elongata_contig155473:272..1402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size612
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155473.3634.1prot_H-elongata_contig155473.3634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155473 272..1402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.0071654-CDS-H-elongata_contig155473:271..4991622929917.0071654-CDS-H-elongata_contig155473:271..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 272..499 -
1691679207.5336452-CDS-H-elongata_contig155473:271..4991691679207.5336452-CDS-H-elongata_contig155473:271..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 272..499 -
1622929917.0242162-CDS-H-elongata_contig155473:814..9851622929917.0242162-CDS-H-elongata_contig155473:814..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 815..985 -
1691679207.5504086-CDS-H-elongata_contig155473:814..9851691679207.5504086-CDS-H-elongata_contig155473:814..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 815..985 -
1622929917.0422313-CDS-H-elongata_contig155473:1189..14021622929917.0422313-CDS-H-elongata_contig155473:1189..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 1190..1402 -
1691679207.561952-CDS-H-elongata_contig155473:1189..14021691679207.561952-CDS-H-elongata_contig155473:1189..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155473 1190..1402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155473.3634.1

>prot_H-elongata_contig155473.3634.1 ID=prot_H-elongata_contig155473.3634.1|Name=mRNA_H-elongata_contig155473.3634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
STSVELLGGCVARGASLHGCPGVVLVSAKGQALWVAPRRQESGRAVDLDA
PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLDGVQSG
GGAAVSGDIDIAIAEVCGAFADKGFLTLAGLEILDGRGQYSPAFACPRQL
VHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCE
LQVS
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mRNA from alignment at H-elongata_contig155473:272..1402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155473.3634.1 ID=mRNA_H-elongata_contig155473.3634.1|Name=mRNA_H-elongata_contig155473.3634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-elongata_contig155473:272..1402- (Himanthalia elongata Himel1 dioecious)
TCGACCAGCGTGGAGCTGCTTGGCGGCTGCGTCGCCAGGGGTGCTTCGCT
TCACGGCTGCCCCGGCGTGGTGCTAGTGTCGGCCAAGGGGCAAGCCCTGT
GGGTGGCACCGCGCAGACAAGAGAGTGGGCGGGCGGTGGACCTCGACGCC
CCGGGGTTTCCCACGTACTCGTCCCGCATGGCGGCCGAGGTCTGGAGGGT
TGCGCTGCTCGACGTGAGAGGGAGTTGAAAAGGGTTTCGATGAAATACGA
GGAGGAGATGGTGTACGGGGGGGTAGTGGGGGTTAGGTCGACGGTAAAAT
AACCTCTTTTGTTTGGAAATTAACTACCGGGGTGGTCCCGAGGGGTGGGC
GCACACGCCGTTAGAAACGTTTGAAGGTTTTGGGACTTTTTTTTTGTCAT
GCGGCGTGTCCGTGCAGGCGGGTCTAAAGTCTCTCGAGGCGGGAAAAAAC
ATGGACGAGGCAAGGTCCAAGGTGGAGATCCTGCTAGACGGGGTCCAGAG
CGGTGGAGGTGCTGCCGTGTCCGGAGACATCGACATCGCCATCGCTGAGG
TGTGTGGGGCATTTGCCGACAAAGGTTTTCTTACTCTGGTACGACTTCGT
GTCTAAAATAGAGAAACGGTGTTTTGGTTATTATCAGCGAGATGTGTGGC
CTTCTCTATGCCGTCGACGAGAAGGGGAAGGGGGTCCCCCTCCCCCTCCC
CCCTCTTTCTATGAGAGTATCAGTGACACACACTCCCGTTTGGGACGCGA
TCACTGTACTATTATAGTGGCTTGTAAGGTAATTCTTTACCTCTCTTCCA
GAATCTGATCTTTCCGATTCCCTCTTTATCTCCACGTACTCCTTCCAAGC
TGCTCGTCATAACGCCTCCACATAACACCTTCCCGCGTTACCTCCGAAAA
CAGGCCGGGCTGGAAATTCTTGACGGGCGCGGTCAATACTCTCCGGCCTT
TGCTTGCCCGCGACAGCTGGTGCACCTGGCCCTACGTGAAAAAGCCAGGC
GCCATCGCTGCCTATTGAGGTTCCTCATGGACGCCGGGACCTGGGGGCTT
GCCACGATCAGTCGTGCCGCGGTCGCCGAGGGAGGGGAAAAGATCGCGGC
CGCCGCGAGACTATGCGAGCTCCAGGTGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig155473:272..1402-

>mRNA_H-elongata_contig155473.3634.1 ID=mRNA_H-elongata_contig155473.3634.1|Name=mRNA_H-elongata_contig155473.3634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig155473:272..1402- (Himanthalia elongata Himel1 dioecious)
TCGACCAGCGTGGAGCTGCTTGGCGGCTGCGTCGCCAGGGGTGCTTCGCT
TCACGGCTGCCCCGGCGTGGTGCTAGTGTCGGCCAAGGGGCAAGCCCTGT
GGGTGGCACCGCGCAGACAAGAGAGTGGGCGGGCGGTGGACCTCGACGCC
CCGGGGTTTCCCACGTACTCGTCCCGCATGGCGGCCGAGGTCTGGAGGGT
TGCGCTGCTCGACTCGACCAGCGTGGAGCTGCTTGGCGGCTGCGTCGCCA
GGGGTGCTTCGCTTCACGGCTGCCCCGGCGTGGTGCTAGTGTCGGCCAAG
GGGCAAGCCCTGTGGGTGGCACCGCGCAGACAAGAGAGTGGGCGGGCGGT
GGACCTCGACGCCCCGGGGTTTCCCACGTACTCGTCCCGCATGGCGGCCG
AGGTCTGGAGGGTTGCGCTGCTCGACGCGGGTCTAAAGTCTCTCGAGGCG
GGAAAAAACATGGACGAGGCAAGGTCCAAGGTGGAGATCCTGCTAGACGG
GGTCCAGAGCGGTGGAGGTGCTGCCGTGTCCGGAGACATCGACATCGCCA
TCGCTGAGGTGTGTGGGGCATTTGCCGACAAAGGTTTTCTTACTCTGGCG
GGTCTAAAGTCTCTCGAGGCGGGAAAAAACATGGACGAGGCAAGGTCCAA
GGTGGAGATCCTGCTAGACGGGGTCCAGAGCGGTGGAGGTGCTGCCGTGT
CCGGAGACATCGACATCGCCATCGCTGAGGTGTGTGGGGCATTTGCCGAC
AAAGGTTTTCTTACTCTGGCCGGGCTGGAAATTCTTGACGGGCGCGGTCA
ATACTCTCCGGCCTTTGCTTGCCCGCGACAGCTGGTGCACCTGGCCCTAC
GTGAAAAAGCCAGGCGCCATCGCTGCCTATTGAGGTTCCTCATGGACGCC
GGGACCTGGGGGCTTGCCACGATCAGTCGTGCCGCGGTCGCCGAGGGAGG
GGAAAAGATCGCGGCCGCCGCGAGACTATGCGAGCTCCAGGTGAGTGCCG
GGCTGGAAATTCTTGACGGGCGCGGTCAATACTCTCCGGCCTTTGCTTGC
CCGCGACAGCTGGTGCACCTGGCCCTACGTGAAAAAGCCAGGCGCCATCG
CTGCCTATTGAGGTTCCTCATGGACGCCGGGACCTGGGGGCTTGCCACGA
TCAGTCGTGCCGCGGTCGCCGAGGGAGGGGAAAAGATCGCGGCCGCCGCG
AGACTATGCGAGCTCCAGGTGAGT
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