prot_H-elongata_contig155473.3634.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig155473.3634.1
Unique Nameprot_H-elongata_contig155473.3634.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
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BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.370e-43
Identity = 110/229 (48.03%), Postives = 139/229 (60.70%), Query Frame = 0 
Query:    1 STSVELLGGCVARGASLHGCPGVVLVSAKGQALWVAPRRQES---------GRAVDLDA--------PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLD-GVQSGGGAAVSGDIDIAIAEVCG-------AFADKGFLTLAGLEILDGRGQYSPAFACPRQLVHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCELQVS 204
            S+   L GGCV  G +L GCPGVVL+S++GQA+WVAPR  ES         G AVDL          PG  T      +E WR+AL++ GL++ E G+ MD AR  V  LL    Q  G  A+S   D+  A V G       A   KG +  AGLE+L+G  ++  AFA P QLVHLALREKARR R L+R L+DAG WG +++ RAA++E GEK+AAA+RLCELQ S
Sbjct:  444 SSRTALSGGCVGGGGALLGCPGVVLLSSQGQAVWVAPRHTESPXXXXXATAGLAVDLGPRPEVVAAIPGNDT------SEEWRMALVEGGLRAFEDGETMDPARLAVGSLLGRAAQETGRGAMSSTEDLDSAIVWGWEGPKPVAARGKGHIQ-AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLLDAGAWGASSVGRAALSECGEKVAAASRLCELQDS 665
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BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.170e-38
Identity = 97/201 (48.26%), Postives = 124/201 (61.69%), Query Frame = 0 
Query:   16 SLHGCPGVVLVSAKGQALWVAPRRQES-------GRAVDLDA--PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLDGV--QSGGGAAVSGD-IDIAIAEVCGAFADKGFLTLAGLEILDGRGQYSPAFACPRQLVHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCELQVS 204
            +L GCPGVVL+S +GQA+WVAPR  ES       G AVDL      F +      +E W++AL++ GL++ E GK MD  R  +  LL     ++G GA  S + ID AI               AGLE+L+G  ++  AFA P QLVHLALREKARR R L+R LMDAG WG  ++ RAA++E GEK+AAA+RLCELQ S
Sbjct:  412 ALLGCPGVVLLSRQGQAVWVAPRHTESPAAAAAAGLAVDLGPCPEVFASIPGNDTSEEWKMALVEGGLRAFEEGKTMDPTRLAMGSLLGRAAQETGRGAMASTENIDSAIVR-------------AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGALSVGRAALSECGEKVAAASRLCELQDS 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155473.3634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMM2_ECTSI4.370e-4348.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHH9_9PHAE2.170e-3848.26Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155473contigH-elongata_contig155473:272..1402 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155473.3634.1mRNA_H-elongata_contig155473.3634.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig155473 272..1402 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig155473.3634.1 ID=prot_H-elongata_contig155473.3634.1|Name=mRNA_H-elongata_contig155473.3634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
STSVELLGGCVARGASLHGCPGVVLVSAKGQALWVAPRRQESGRAVDLDA
PGFPTYSSRMAAEVWRVALLDAGLKSLEAGKNMDEARSKVEILLDGVQSG
GGAAVSGDIDIAIAEVCGAFADKGFLTLAGLEILDGRGQYSPAFACPRQL
VHLALREKARRHRCLLRFLMDAGTWGLATISRAAVAEGGEKIAAAARLCE
LQVS
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