mRNA_H-elongata_contig155414.3629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155414.3629.1
Unique NamemRNA_H-elongata_contig155414.3629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.390e-49
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGDITASER AWE+NF+A PE L AEEK+AFL ELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQ GGSVAD QVIAACDEY MSMAFTGIRLFHH
Sbjct:  512 RYIEGDITASERPAWESNFEAKPEALTAEEKDAFLAELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQAGGSVADEQVIAACDEYGMSMAFTGIRLFHH 610
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A7S2YT67_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YT67_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.980e-44
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD TA E+V WEA F  VPEPL AEEK+AFL E SGV++SSDAFFPFRDSIDHASK+GVS+VAQPGGSV D QV  ACDEY M+MAFTG+RLFHH
Sbjct:  519 RYIEGDFTAEEKVRWEAQFATVPEPLTAEEKDAFLKEASGVAVSSDAFFPFRDSIDHASKIGVSFVAQPGGSVQDAQVTEACDEYGMAMAFTGVRLFHH 617
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A6S9H1W5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H1W5_HETAK)

HSP 1 Score: 160 bits (404), Expect = 3.510e-44
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGDITA+ER  WEANF++VPEPL  EEK A+L  L GV+LSSDAFFPFRDSIDHASKVGV ++AQPGGSVAD  VIAACDEY M+MAFT +RLFHH
Sbjct:  511 RYIEGDITAAERPVWEANFESVPEPLTEEEKTAWLATLDGVALSSDAFFPFRDSIDHASKVGVKFIAQPGGSVADAGVIAACDEYGMAMAFTDVRLFHH 609
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A1Z5K3V3_FISSO (Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3V3_FISSO)

HSP 1 Score: 155 bits (393), Expect = 1.680e-42
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD TA E+V W   F  VPEPL AEEKE FL + +G+S+SSDAFFPFRDSIDHASK+GVSYVAQPGGSV DGQ+  ACDEY M+MAFTG+RLFHH
Sbjct:  538 RYIEGDFTAEEKVRWLEQFTEVPEPLTAEEKEDFLKQSTGISISSDAFFPFRDSIDHASKLGVSYVAQPGGSVQDGQITEACDEYGMTMAFTGVRLFHH 636
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A836CED7_9STRA (Putative bifunctional purine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED7_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.630e-42
Identity = 75/99 (75.76%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGDITASER  WEANF+ VPEPL   +K  F+  L GV+L+SDAFFPFRDSIDHASKVGVSY+AQ GGSVAD  VIAA DEY M+MAFTG+RLFHH
Sbjct:  515 RYIEGDITASERPRWEANFEEVPEPLTEADKSEFMASLDGVALASDAFFPFRDSIDHASKVGVSYIAQAGGSVADDSVIAAADEYKMAMAFTGLRLFHH 613
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A6T6HRK1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HRK1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.700e-42
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD T  E+V W A F   PEPL  +EK  FL   +GVS+SSDAFFPFRDSIDHASK+GV+YVAQPGGSV DGQV  ACDEY M+M FTG RLFHH
Sbjct:   92 RYIEGDFTEEEKVRWAAQFTETPEPLTEDEKNDFLKGSTGVSISSDAFFPFRDSIDHASKLGVTYVAQPGGSVQDGQVTEACDEYGMAMCFTGTRLFHH 190
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: B8C300_THAPS (Probable bifunctional purine synthesis protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C300_THAPS)

HSP 1 Score: 154 bits (388), Expect = 7.190e-42
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD TA ER  WE+ F+ +PEPL  EEK+ F+ + +GV++SSDAFFPFRDSIDHASKVGVSYVAQPGGSV D QV A CD+Y M MAFTG+RLFHH
Sbjct:  518 RYIEGDFTAEERTRWESQFETIPEPLTQEEKDDFMKQATGVTISSDAFFPFRDSIDHASKVGVSYVAQPGGSVQDDQVTACCDDYGMKMAFTGVRLFHH 616
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A7S1H2X5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2X5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.750e-41
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD T  E+  WEA F   P  L  EEK  FL + +G+S+SSDAFFPFRDSIDHASK+GVSYVAQPGGSV DGQV  ACDEY M+M FTGIRLFHH
Sbjct:  182 RYIEGDFTDEEKTRWEAQFTEAPPVLTDEEKAEFLKQSTGISISSDAFFPFRDSIDHASKLGVSYVAQPGGSVQDGQVTEACDEYGMAMCFTGIRLFHH 280
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: A0A7S2MN46_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MN46_9DINO)

HSP 1 Score: 143 bits (360), Expect = 1.670e-40
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGD+  +E   WE NFDA P PL A+EK  FL  LSGV++SSDAFFPFRDSID  S++GVSYVAQPGGSVAD +VIAACD Y M+MAFT +RLFHH
Sbjct:  158 RYIEGDMQEAELQQWEKNFDAAPAPLTADEKAQFLQGLSGVAVSSDAFFPFRDSIDACSRIGVSYVAQPGGSVADEEVIAACDAYGMAMAFTDLRLFHH 256
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BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Match: K8YRA1_NANGC (Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRA1_NANGC)

HSP 1 Score: 150 bits (378), Expect = 2.740e-40
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFPFRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH 297
            RYIEGDITA+ER  WEANF+ VP PL  +EK AF+G L GVSLSSDAFFPFRDSIDHASK GV+YV QPGGSV D QV   C+ Y M+MAFT +RLFHH
Sbjct:  567 RYIEGDITAAERPLWEANFEDVPSPLTEDEKAAFMGTLKGVSLSSDAFFPFRDSIDHASKYGVTYVVQPGGSVQDTQVTECCNNYGMAMAFTNVRLFHH 665
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155414.3629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE2.390e-4988.89MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2YT67_9STRA1.980e-4477.78Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A6S9H1W5_HETAK3.510e-4477.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5K3V3_FISSO1.680e-4274.75Phosphoribosylaminoimidazolecarboxamide formyltran... [more]
A0A836CED7_9STRA3.630e-4275.76Putative bifunctional purine synthesis protein n=1... [more]
A0A6T6HRK1_9STRA4.700e-4270.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8C300_THAPS7.190e-4271.72Probable bifunctional purine synthesis protein n=1... [more]
A0A7S1H2X5_9STRA7.750e-4170.71Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2MN46_9DINO1.670e-4070.71Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
K8YRA1_NANGC2.740e-4072.73Phosphoribosylaminoimidazolecarboxamide formyltran... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155414contigH-elongata_contig155414:466..1375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.1e-42
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.4703655-CDS-H-elongata_contig155414:465..6451622929916.4703655-CDS-H-elongata_contig155414:465..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155414 466..645 +
1691679207.3267195-CDS-H-elongata_contig155414:465..6451691679207.3267195-CDS-H-elongata_contig155414:465..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155414 466..645 +
1622929916.5176718-CDS-H-elongata_contig155414:1255..13751622929916.5176718-CDS-H-elongata_contig155414:1255..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155414 1256..1375 +
1691679207.347843-CDS-H-elongata_contig155414:1255..13751691679207.347843-CDS-H-elongata_contig155414:1255..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155414 1256..1375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155414.3629.1prot_H-elongata_contig155414.3629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155414 466..1375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155414.3629.1

>prot_H-elongata_contig155414.3629.1 ID=prot_H-elongata_contig155414.3629.1|Name=mRNA_H-elongata_contig155414.3629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
RYIEGDITASERVAWEANFDAVPEPLAAEEKEAFLGELSGVSLSSDAFFP
FRDSIDHASKVGVSYVAQPGGSVADGQVIAACDEYDMSMAFTGIRLFHH*
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mRNA from alignment at H-elongata_contig155414:466..1375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155414.3629.1 ID=mRNA_H-elongata_contig155414.3629.1|Name=mRNA_H-elongata_contig155414.3629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=910bp|location=Sequence derived from alignment at H-elongata_contig155414:466..1375+ (Himanthalia elongata Himel1 dioecious)
AGGTATATTGAGGGTGACATCACGGCGTCTGAGCGGGTGGCATGGGAAGC
CAACTTCGACGCGGTTCCGGAACCCTTGGCTGCGGAAGAGAAAGAGGCTT
TTCTTGGGGAACTTAGCGGGGTCAGCCTGTCTTCGGACGCCTTCTTCCCC
TTCCGCGACTCGATCGACCACGCCTCCAAGGTGACACGTAACCCACAAAA
TGGGGTAACATAGGAAAATAGTATTTTCGCGCACGATTTCAGAATGTTCC
TCACATTTTTATTCTAAGCAGAAGGGAAACGGGAGACGTTTCTTGTATGG
GAAGAGGGAAGGTAACTGGGATTGAATCGGGTGATGCGGTATCCAGCCGG
GTCGAGCATTTGAATATTTGGTCTATTTAATAGTCGTGCGTGTGGGTGTT
GCTTTCACATTATGCTGATTGAGACTACGCTTGTGATTTGCTGAAGAGGG
AAAAACAATCAAATACGACAGCAGAAAACTCAAAACTTCAATAAAACAAA
GTGGGCCATCAGACAAAAAAAAAAAACATTGTTGTGGAGGATAGCCTTTA
GTCTATATACAAGATGCAGACAAGGAGTCTTGGGTCAACGGAGCACACAC
AAATAAAATCCAGGATGTAAAGCTATAGCACAACAGTTGATATCCAAACT
TCTAACAGAACTCGCCCAAGGTCGCGATTTAGCTAACATTTCACGCTATA
CGAGAACTGTTTCTGTGTGTGTGTCAGTGTGTCACGCCTTCATGTAAAGC
TTGAAATGGCACAACGATATATATATATGTCACGCGGCAGGTGGGCGTTT
CATATGTGGCTCAGCCTGGCGGGTCGGTGGCAGACGGCCAAGTGATCGCG
GCGTGCGACGAGTACGACATGTCAATGGCCTTCACGGGTATCCGACTCTT
TCACCACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155414:466..1375+

>mRNA_H-elongata_contig155414.3629.1 ID=mRNA_H-elongata_contig155414.3629.1|Name=mRNA_H-elongata_contig155414.3629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig155414:466..1375+ (Himanthalia elongata Himel1 dioecious)
AGGTATATTGAGGGTGACATCACGGCGTCTGAGCGGGTGGCATGGGAAGC
CAACTTCGACGCGGTTCCGGAACCCTTGGCTGCGGAAGAGAAAGAGGCTT
TTCTTGGGGAACTTAGCGGGGTCAGCCTGTCTTCGGACGCCTTCTTCCCC
TTCCGCGACTCGATCGACCACGCCTCCAAGAGGTATATTGAGGGTGACAT
CACGGCGTCTGAGCGGGTGGCATGGGAAGCCAACTTCGACGCGGTTCCGG
AACCCTTGGCTGCGGAAGAGAAAGAGGCTTTTCTTGGGGAACTTAGCGGG
GTCAGCCTGTCTTCGGACGCCTTCTTCCCCTTCCGCGACTCGATCGACCA
CGCCTCCAAGGTGGGCGTTTCATATGTGGCTCAGCCTGGCGGGTCGGTGG
CAGACGGCCAAGTGATCGCGGCGTGCGACGAGTACGACATGTCAATGGCC
TTCACGGGTATCCGACTCTTTCACCACTGAGTGGGCGTTTCATATGTGGC
TCAGCCTGGCGGGTCGGTGGCAGACGGCCAAGTGATCGCGGCGTGCGACG
AGTACGACATGTCAATGGCCTTCACGGGTATCCGACTCTTTCACCACTGA
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