mRNA_H-elongata_contig155327.3622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155327.3622.1
Unique NamemRNA_H-elongata_contig155327.3622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A6H5JKZ1_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.130e-21
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 RFRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            +FRDLK+EYD LDC VLGVSADHEVSHGKFIAK+GLNFRLLADTDR
Sbjct:  140 KFRDLKDEYDRLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDR 185
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A6H5J6N3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6N3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.280e-15
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRDL+++YDALDCVVLGVSAD E SH  FIA  GLNF LLADTD+
Sbjct:   94 FRDLQSDYDALDCVVLGVSADSEASHQDFIADLGLNFSLLADTDK 138
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A7S2V4W9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.330e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 RFRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            RFRDLK E+DA +CV+LGVSAD E SH +FIA+   NF LLADT R
Sbjct:   56 RFRDLKAEFDAKNCVILGVSADDEESHQRFIAEHSFNFHLLADTSR 101
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A0D8ZVQ0_9CYAN (Alkyl hydroperoxide reductase n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0D8ZVQ0_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 2.580e-11
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRD  NEY   D VVLGVSAD EVSH +F  K+ LNF LLADTD+
Sbjct:   52 FRDASNEYQGKDVVVLGVSADDEVSHQQFTQKYNLNFPLLADTDK 96
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: K9QLE6_9NOSO (Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=12 Tax=Cyanobacteria TaxID=1117 RepID=K9QLE6_9NOSO)

HSP 1 Score: 60.5 bits (145), Expect = 2.820e-10
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRD + +Y   D VVLGVSAD EVSH  F  KF LNF LLADTD+
Sbjct:   52 FRDAQEQYQGKDVVVLGVSADDEVSHQAFTQKFNLNFPLLADTDK 96
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A2I8ACZ7_9NOSO (Peroxiredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2I8ACZ7_9NOSO)

HSP 1 Score: 60.5 bits (145), Expect = 2.880e-10
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTD 135
            FRD K++Y   D VVLGVSAD EVSH  F  K+ LNF LLADTD
Sbjct:   52 FRDAKDDYQGKDIVVLGVSADDEVSHQAFTQKYNLNFPLLADTD 95
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BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A433MZ60_CHLFR (Peroxiredoxin n=3 Tax=Nostocales TaxID=1161 RepID=A0A433MZ60_CHLFR)

HSP 1 Score: 60.1 bits (144), Expect = 3.980e-10
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRD  +EY + D VVLGVSAD EVSH  F  K+ LNF LLADTD+
Sbjct:   52 FRDATDEYKSKDIVVLGVSADDEVSHQAFTQKYNLNFPLLADTDK 96
[Close]
BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A7S2V6E0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.120e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRDLK+++D  +C +LGVSAD E SH KFI K+ LNF LL+D  R
Sbjct:   31 FRDLKSQFDDRNCKILGVSADSENSHKKFIGKYDLNFDLLSDPSR 75
[Close]
BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A1B7VA47_9NOST (Alkyl hydroperoxide reductase n=7 Tax=Nostocales TaxID=1161 RepID=A0A1B7VA47_9NOST)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-9
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRD + EY   D VVLGVSAD EVSH  F  K+ LNF LLADTD+
Sbjct:   52 FRDSQAEYKDKDVVVLGVSADDEVSHQAFTNKYNLNFPLLADTDK 96
[Close]
BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Match: A0A7C7GSK3_9GAMM (Thioredoxin peroxidase n=1 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A7C7GSK3_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 3.820e-9
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 FRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR 138
            FRDL  + D  + VVLG+SAD E SH KFI K+ LNF LL D DR
Sbjct:   52 FRDLSKQLDKTNTVVLGISADDEASHQKFIGKYKLNFTLLCDPDR 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155327.3622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ1_9PHAE4.130e-2189.13Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5J6N3_9PHAE8.280e-1575.56Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2V4W9_9STRA1.330e-1267.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0D8ZVQ0_9CYAN2.580e-1166.67Alkyl hydroperoxide reductase n=4 Tax=Cyanobacteri... [more]
K9QLE6_9NOSO2.820e-1064.44Alkyl hydroperoxide reductase/ Thiol specific anti... [more]
A0A2I8ACZ7_9NOSO2.880e-1065.91Peroxiredoxin n=3 Tax=Cyanobacteria TaxID=1117 Rep... [more]
A0A433MZ60_CHLFR3.980e-1064.44Peroxiredoxin n=3 Tax=Nostocales TaxID=1161 RepID=... [more]
A0A7S2V6E0_9STRA6.120e-1060.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1B7VA47_9NOST3.140e-964.44Alkyl hydroperoxide reductase n=7 Tax=Nostocales T... [more]
A0A7C7GSK3_9GAMM3.820e-960.00Thioredoxin peroxidase n=1 Tax=Chromatiaceae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155327contigH-elongata_contig155327:1255..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog2880.D8LK67
Preferred nameDOT5
KEGG koko:K03564,ko:K17275
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG1225@1,KOG0855@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.8094876-CDS-H-elongata_contig155327:1254..13951622929915.8094876-CDS-H-elongata_contig155327:1254..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155327 1255..1395 -
1691679207.170124-CDS-H-elongata_contig155327:1254..13951691679207.170124-CDS-H-elongata_contig155327:1254..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155327 1255..1395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155327.3622.1prot_H-elongata_contig155327.3622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155327 1255..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155327.3622.1

>prot_H-elongata_contig155327.3622.1 ID=prot_H-elongata_contig155327.3622.1|Name=mRNA_H-elongata_contig155327.3622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
RFRDLKNEYDALDCVVLGVSADHEVSHGKFIAKFGLNFRLLADTDR*
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mRNA from alignment at H-elongata_contig155327:1255..1395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155327.3622.1 ID=mRNA_H-elongata_contig155327.3622.1|Name=mRNA_H-elongata_contig155327.3622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig155327:1255..1395- (Himanthalia elongata Himel1 dioecious)
AGGTTCCGCGATCTGAAGAATGAGTACGACGCCCTGGACTGCGTGGTGCT
CGGTGTGAGCGCCGACCACGAGGTCAGCCACGGGAAGTTCATCGCCAAGT
TTGGACTGAATTTCAGGCTGCTCGCTGACACCGACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155327:1255..1395-

>mRNA_H-elongata_contig155327.3622.1 ID=mRNA_H-elongata_contig155327.3622.1|Name=mRNA_H-elongata_contig155327.3622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig155327:1255..1395- (Himanthalia elongata Himel1 dioecious)
AGGTTCCGCGATCTGAAGAATGAGTACGACGCCCTGGACTGCGTGGTGCT
CGGTGTGAGCGCCGACCACGAGGTCAGCCACGGGAAGTTCATCGCCAAGT
TTGGACTGAATTTCAGGCTGCTCGCTGACACCGACAGGTGAAGGTTCCGC
GATCTGAAGAATGAGTACGACGCCCTGGACTGCGTGGTGCTCGGTGTGAG
CGCCGACCACGAGGTCAGCCACGGGAAGTTCATCGCCAAGTTTGGACTGA
ATTTCAGGCTGCTCGCTGACACCGACAGGTGA
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