mRNA_H-elongata_contig15528.3619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15528.3619.1
Unique NamemRNA_H-elongata_contig15528.3619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15528.3619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15528contigH-elongata_contig15528:4296..4932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15528.3619.1prot_H-elongata_contig15528.3619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15528 4410..4908 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.448406-UTR-H-elongata_contig15528:4295..44091622929915.448406-UTR-H-elongata_contig15528:4295..4409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15528 4296..4409 -
1691679206.9870567-UTR-H-elongata_contig15528:4295..44091691679206.9870567-UTR-H-elongata_contig15528:4295..4409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15528 4296..4409 -
1622929915.4921193-UTR-H-elongata_contig15528:4908..49321622929915.4921193-UTR-H-elongata_contig15528:4908..4932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15528 4909..4932 -
1691679207.0202415-UTR-H-elongata_contig15528:4908..49321691679207.0202415-UTR-H-elongata_contig15528:4908..4932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15528 4909..4932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.4650762-CDS-H-elongata_contig15528:4409..45651622929915.4650762-CDS-H-elongata_contig15528:4409..4565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15528 4410..4565 -
1691679206.9978738-CDS-H-elongata_contig15528:4409..45651691679206.9978738-CDS-H-elongata_contig15528:4409..4565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15528 4410..4565 -
1622929915.4789531-CDS-H-elongata_contig15528:4764..49081622929915.4789531-CDS-H-elongata_contig15528:4764..4908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15528 4765..4908 -
1691679207.0101166-CDS-H-elongata_contig15528:4764..49081691679207.0101166-CDS-H-elongata_contig15528:4764..4908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15528 4765..4908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15528.3619.1

>prot_H-elongata_contig15528.3619.1 ID=prot_H-elongata_contig15528.3619.1|Name=mRNA_H-elongata_contig15528.3619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MGSKRVYVLSPLRKLVWGLELRDLSGVCRVYWTHPKDAIRTCCPLDSTVG
GQLDRRRPKGRLNLRVPESDRREPGVSEGKPDIWPRSGVCLPRRANLKQ*
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mRNA from alignment at H-elongata_contig15528:4296..4932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15528.3619.1 ID=mRNA_H-elongata_contig15528.3619.1|Name=mRNA_H-elongata_contig15528.3619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=637bp|location=Sequence derived from alignment at H-elongata_contig15528:4296..4932- (Himanthalia elongata Himel1 dioecious)
CACATATGCCCTGCAGTACGTGATATGGGATCAAAGCGGGTATACGTGCT
ATCTCCCCTCCGAAAACTGGTTTGGGGGCTTGAGCTGAGGGATCTCTCCG
GCGTGTGTAGGGTATACTGGACACACCCCAAAGATGCGATACGAACTTGC
TGCCCACTCGATTCAACCGTTTGTGTCGGTTGGCAAGCCGTGATGGTTTG
GTTGCATCAAGATGGTGCTCACCAGGTGCGCCGCTTCCGAACCCCAAGCT
CGTGATTAAATAGCTGAAGCACGTGGAGACAGGTGACTCTATCGTGGAAA
TTATGATAGGTTGCTGCAGCATAGGCCAGCGTGCTCTATCAGAAGAGTAC
GGACCAGATTTGACGAGGTTGGAGGGCAGCTCGATCGTCGACGACCCAAA
GGAAGGCTCAACCTTCGTGTGCCAGAATCCGATAGGCGCGAACCGGGGGT
CTCGGAAGGGAAACCTGATATCTGGCCTCGGTCTGGTGTCTGTCTTCCTA
GGAGAGCCAACTTGAAGCAGTGAACGAGCATGACTTGGGGCGTCAAGCGG
GTTCAGGGCGTTGGACGGGTGGATGCTATTTGGAGCGCTAACTGCACAGA
CGGCTCAAGGCCGCCACTGTCATGAACCTAGGTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig15528:4296..4932-

>mRNA_H-elongata_contig15528.3619.1 ID=mRNA_H-elongata_contig15528.3619.1|Name=mRNA_H-elongata_contig15528.3619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig15528:4296..4932- (Himanthalia elongata Himel1 dioecious)
ATGGGATCAAAGCGGGTATACGTGCTATCTCCCCTCCGAAAACTGGTTTG
GGGGCTTGAGCTGAGGGATCTCTCCGGCGTGTGTAGGGTATACTGGACAC
ACCCCAAAGATGCGATACGAACTTGCTGCCCACTCGATTCAACCATGGGA
TCAAAGCGGGTATACGTGCTATCTCCCCTCCGAAAACTGGTTTGGGGGCT
TGAGCTGAGGGATCTCTCCGGCGTGTGTAGGGTATACTGGACACACCCCA
AAGATGCGATACGAACTTGCTGCCCACTCGATTCAACCGTTGGAGGGCAG
CTCGATCGTCGACGACCCAAAGGAAGGCTCAACCTTCGTGTGCCAGAATC
CGATAGGCGCGAACCGGGGGTCTCGGAAGGGAAACCTGATATCTGGCCTC
GGTCTGGTGTCTGTCTTCCTAGGAGAGCCAACTTGAAGCAGTGAGTTGGA
GGGCAGCTCGATCGTCGACGACCCAAAGGAAGGCTCAACCTTCGTGTGCC
AGAATCCGATAGGCGCGAACCGGGGGTCTCGGAAGGGAAACCTGATATCT
GGCCTCGGTCTGGTGTCTGTCTTCCTAGGAGAGCCAACTTGAAGCAGTGA
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