mRNA_H-elongata_contig155266.3618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155266.3618.1
Unique NamemRNA_H-elongata_contig155266.3618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155266.3618.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.670e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 PHVGLVARLFTGIDTTSCQAERDFSALKLVVSDLHARL 117
            PH+ L+ARLF GI++TSCQAER+FSAL  ++  L + +
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSM 449
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BLAST of mRNA_H-elongata_contig155266.3618.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.750e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 PHVGLVARLFTGIDTTSCQAERDFSALKLVVSDLHARL 117
            PH+ L+ARLF GI++TSCQAER+FSAL  ++  L + +
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSM 777
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155266.3618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE9.670e-655.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE9.750e-655.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155266contigH-elongata_contig155266:377..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.413179-CDS-H-elongata_contig155266:376..5441622929915.413179-CDS-H-elongata_contig155266:376..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155266 377..544 +
1691679206.9770231-CDS-H-elongata_contig155266:376..5441691679206.9770231-CDS-H-elongata_contig155266:376..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155266 377..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155266.3618.1prot_H-elongata_contig155266.3618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155266 377..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155266.3618.1

>prot_H-elongata_contig155266.3618.1 ID=prot_H-elongata_contig155266.3618.1|Name=mRNA_H-elongata_contig155266.3618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
WPHVGLVARLFTGIDTTSCQAERDFSALKLVVSDLHARLNRHPIPGLGKV
VSELEM
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mRNA from alignment at H-elongata_contig155266:377..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155266.3618.1 ID=mRNA_H-elongata_contig155266.3618.1|Name=mRNA_H-elongata_contig155266.3618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig155266:377..544+ (Himanthalia elongata Himel1 dioecious)
TGGCCGCATGTGGGCTTGGTGGCGCGGTTGTTTACAGGAATCGACACGAC
CAGTTGTCAAGCAGAGAGGGATTTTTCCGCTCTTAAGTTGGTCGTGAGCG
ATCTCCACGCTAGGCTTAACAGGCACCCGATTCCTGGGCTAGGCAAGGTT
GTCAGCGAGTTGGAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig155266:377..544+

>mRNA_H-elongata_contig155266.3618.1 ID=mRNA_H-elongata_contig155266.3618.1|Name=mRNA_H-elongata_contig155266.3618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig155266:377..544+ (Himanthalia elongata Himel1 dioecious)
TGGCCGCATGTGGGCTTGGTGGCGCGGTTGTTTACAGGAATCGACACGAC
CAGTTGTCAAGCAGAGAGGGATTTTTCCGCTCTTAAGTTGGTCGTGAGCG
ATCTCCACGCTAGGCTTAACAGGCACCCGATTCCTGGGCTAGGCAAGGTT
GTCAGCGAGTTGGAAATGTGGCCGCATGTGGGCTTGGTGGCGCGGTTGTT
TACAGGAATCGACACGACCAGTTGTCAAGCAGAGAGGGATTTTTCCGCTC
TTAAGTTGGTCGTGAGCGATCTCCACGCTAGGCTTAACAGGCACCCGATT
CCTGGGCTAGGCAAGGTTGTCAGCGAGTTGGAAATG
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