mRNA_H-elongata_contig15498.3606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15498.3606.1
Unique NamemRNA_H-elongata_contig15498.3606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: D7FLC9_ECTSI (6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLC9_ECTSI)

HSP 1 Score: 430 bits (1105), Expect = 7.620e-148
Identity = 210/228 (92.11%), Postives = 220/228 (96.49%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAER+EA+K L GP  IP+V KEQLVEDIKAALYCSKICSYAQGMNLIKSAS HFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVR+P LDNLLVDPDF+AQIL+RQA+WRRVVTLC++SGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYER+DKEGTFHCLWDDTHKDIGDV GRIAGEL
Sbjct:  269 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERVEAAKTLTGPTDIPKVSKEQLVEDIKAALYCSKICSYAQGMNLIKSASNHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRDPELDNLLVDPDFTAQILERQASWRRVVTLCVASGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERVDKEGTFHCLWDDTHKDIGDVTGRIAGEL 496          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: B7ZGN3_9PHAE (6-phosphogluconate dehydrogenase, decarboxylating n=3 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN3_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 5.150e-142
Identity = 197/228 (86.40%), Postives = 218/228 (95.61%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWT+QEAAERSTAAPTMAAALDARY+SGRK ER+EA+K L+GP  IP+VPK QL+ED+KAALYCSKICSYAQGMNLIK+ASEHFEWGVDLGECARIWKGGCIIRAAFLDDIK AY++N +LDNLLVDP  ++QIL+RQAAWRRVVTLC++SGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYER+DKEG FHCLWDDTHK+IGD+AGR+AGEL
Sbjct:  263 TGMKGTGRWTVQEAAERSTAAPTMAAALDARYMSGRKGERVEAAKTLKGPSTIPQVPKAQLIEDMKAALYCSKICSYAQGMNLIKAASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKNAYIKNADLDNLLVDPFITSQILERQAAWRRVVTLCVASGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERVDKEGVFHCLWDDTHKEIGDIAGRMAGEL 490          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A836CLE8_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE8_9STRA)

HSP 1 Score: 354 bits (908), Expect = 3.880e-118
Identity = 170/228 (74.56%), Postives = 192/228 (84.21%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWT+QEAAERST APTMA ALDARY+S RK ERI AS IL GP   P+V + QLV D+ AALYC+KICSYAQGMNLIK+ASEH  W +DLGEC+RIWKGGCIIRAAFL +IK AY +N  L NLLVDPDF+A +  RQ AWRRVV+LC++SG+A P+M+ASLSYFD YRR  LPANLVQAQRDFFG HTYER D+ GTFHCLWDD+HKDIGD+A RIAG L
Sbjct:  259 TGMKGTGRWTVQEAAERSTPAPTMACALDARYLSARKDERIAASSILNGPAEFPKVDRGQLVGDVMAALYCAKICSYAQGMNLIKAASEHNNWNIDLGECSRIWKGGCIIRAAFLSNIKSAYDKNGQLANLLVDPDFAASLNSRQNAWRRVVSLCVASGVACPSMSASLSYFDYYRRGSLPANLVQAQRDFFGGHTYERTDRPGTFHCLWDDSHKDIGDLASRIAGNL 486          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A7S2XZ87_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ87_9STRA)

HSP 1 Score: 347 bits (889), Expect = 3.080e-115
Identity = 162/228 (71.05%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAERS  APTMA ALDARY+S RK ER+ AS +L+GP  IP V + QL++D++ ALY SKICSYAQG++LI++AS+HF WGVDLGEC+RIWKGGCIIRAAFLD IK+AYVR PNL NLLVDPDF+ ++  RQ +WRRVV+LC++SGIA P++  SL+YFD+YRRARLPANL QAQRDFFG HT+ER+D+EG FHC W D HKDIG++  R AGEL
Sbjct:  261 TGMKGTGRWTIQEAAERSVPAPTMAGALDARYLSARKEERVAASTVLQGPAEIPSVDRAQLIDDVRQALYASKICSYAQGLSLIEAASDHFGWGVDLGECSRIWKGGCIIRAAFLDRIKQAYVRTPNLKNLLVDPDFAQELNARQPSWRRVVSLCVASGIACPSLAQSLAYFDAYRRARLPANLTQAQRDFFGGHTFERVDREGQFHCAWTDDHKDIGNINERKAGEL 488          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: W7TN92_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN92_9STRA)

HSP 1 Score: 337 bits (864), Expect = 2.290e-111
Identity = 160/228 (70.18%), Postives = 185/228 (81.14%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAER+  A TMAAALDARY+SGRK ER+ AS +L GP  IP + + Q++ D K ALYCSKI SYAQGMNLI+ AS+ F+W VDL ECARIWKGGCIIRA FLD I+ AY RN  L NLLVDPDF+ ++  +QA+WRR+V+LC++SGIA PA +ASL YFDSYR+ARLPANL QAQRDFFG HTYERID+EG FHC W  +HKDIGD   R AGEL
Sbjct:  259 TGMKGTGRWTIQEAAERNVPATTMAAALDARYLSGRKEERVAASAVLEGPKEIPSIDRAQIISDCKEALYCSKIVSYAQGMNLIREASDQFDWKVDLAECARIWKGGCIIRAGFLDRIRAAYARNVELPNLLVDPDFAGELNSKQASWRRIVSLCVASGIACPAFSASLGYFDSYRKARLPANLTQAQRDFFGGHTYERIDREGWFHCAWTASHKDIGDATQRTAGEL 486          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A7S3XUE3_HETAK (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUE3_HETAK)

HSP 1 Score: 336 bits (861), Expect = 3.440e-111
Identity = 161/228 (70.61%), Postives = 190/228 (83.33%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAERS +APTMAAALDARY+SGRK ER+ A+ +LRGP  IP V + QLV+D++ ALY +KICSYAQGM LI++AS+H  WGVDLGECARIWKGGCIIRAAFLD IK A+ R+  L NLLVDPDF+ ++  RQ +WRRVV+L ++SGIA P++  SL+YFD+YRR RLPANL QAQRDFFG HTYER+D+EG FHC W + HKDIGDV  R AGEL
Sbjct:  247 TGMKGTGRWTIQEAAERSVSAPTMAAALDARYLSGRKDERVAAAAVLRGPTEIPAVDRAQLVDDVRQALYAAKICSYAQGMCLIRAASDHHGWGVDLGECARIWKGGCIIRAAFLDRIKAAFDRDAALPNLLVDPDFAQELNARQPSWRRVVSLAVASGIATPSLAGSLAYFDAYRRERLPANLTQAQRDFFGGHTYERLDREGNFHCAWSEAHKDIGDVNERGAGEL 474          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A6U4GAQ4_9STRA (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GAQ4_9STRA)

HSP 1 Score: 324 bits (830), Expect = 1.520e-108
Identity = 152/228 (66.67%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAE+S AA TMAAALD RY+SGRK ERI A+ IL+GP  IP V ++Q+V D+K ALYC+KICSYAQGM LI++AS+  +WGVDL ECARIWKGGCIIRA FLD I+ AY  +P L NL++DP F+  +  RQ++WRR+V+LC++SGIA PA+ ASL+Y+D+YRR RLPANL QAQRDFFG H+YER D+ G FHC W D HKDIG +  R AG L
Sbjct:   99 TGMKGTGRWTIQEAAEQSVAASTMAAALDMRYMSGRKDERITAATILQGPSEIPSVARDQIVADVKEALYCAKICSYAQGMALIRAASDKMDWGVDLSECARIWKGGCIIRARFLDKIRAAYAADPRLPNLMIDPAFAQTLNSRQSSWRRIVSLCVASGIACPALAASLNYYDTYRRPRLPANLTQAQRDFFGGHSYERTDRPGNFHCAWTDAHKDIGSIEERNAGNL 326          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A6U4G148_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G148_9STRA)

HSP 1 Score: 324 bits (830), Expect = 3.490e-106
Identity = 152/228 (66.67%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWTIQEAAE+S AA TMAAALD RY+SGRK ERI A+ IL+GP  IP V ++Q+V D+K ALYC+KICSYAQGM LI++AS+  +WGVDL ECARIWKGGCIIRA FLD I+ AY  +P L NL++DP F+  +  RQ++WRR+V+LC++SGIA PA+ ASL+Y+D+YRR RLPANL QAQRDFFG H+YER D+ G FHC W D HKDIG +  R AG L
Sbjct:  272 TGMKGTGRWTIQEAAEQSVAASTMAAALDMRYMSGRKDERITAATILQGPSEIPSVARDQIVADVKEALYCAKICSYAQGMALIRAASDKMDWGVDLSECARIWKGGCIIRARFLDKIRAAYAADPRLPNLMIDPAFAQTLNSRQSSWRRIVSLCVASGIACPALAASLNYYDTYRRPRLPANLTQAQRDFFGGHSYERTDRPGNFHCAWTDAHKDIGSIEERNAGNL 499          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: F0W5J1_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Albugo TaxID=65356 RepID=F0W5J1_9STRA)

HSP 1 Score: 323 bits (829), Expect = 9.950e-106
Identity = 150/228 (65.79%), Postives = 189/228 (82.89%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWT+QEAAERS AAPTMAAALD+RY+S RK ER+ AS+ L GP +IP V K+QL++D++ ALY SKICSYAQG+NLI+ A +   W +DLGECARIWKGGCIIRAAFLD IK AY +N +L +LLVDPDF+ ++  RQ +WRRVV+L ++SGI +P+++ASL+Y+D +RR RLPANL QAQRDFFG HTYERID+EG FHC W + H +IG+++ R+ GEL
Sbjct:  296 TGMKGTGRWTVQEAAERSIAAPTMAAALDSRYLSARKEERVIASRTLNGPTSIPAVDKQQLIDDVRQALYASKICSYAQGLNLIREAGKQMGWDIDLGECARIWKGGCIIRAAFLDRIKAAYAKNASLFSLLVDPDFALELNARQCSWRRVVSLAVASGIPSPSLSASLNYYDQFRRDRLPANLTQAQRDFFGGHTYERIDREGNFHCEWTEAHHNIGNISERVRGEL 523          
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Match: A0A2P4YKL3_9STRA (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKL3_9STRA)

HSP 1 Score: 314 bits (804), Expect = 6.280e-105
Identity = 150/228 (65.79%), Postives = 181/228 (79.39%), Query Frame = 1
Query:    1 TGMKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPAIPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECARIWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVVTLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDKEGTFHCLWDDTHKDIGDVAGRIAGEL 684
            TGMKGTGRWT+QEAAERS AAPT+ A+LDARY+S RK ER+ ASKIL GP  IP V K+QL++D++ ALY SKICSYAQG+NLI+ A     W V+LGECARIWKGGCIIRA FLD IK AY ++ +L +LLVDPDF+A++  RQ +WRRVV+L ++SGI AP+ + SL+Y+D++RR RLPANL QAQRDFFG HTYER D+ G FHC W D H  IGDV  RI G L
Sbjct:   76 TGMKGTGRWTVQEAAERSIAAPTITASLDARYLSARKDERVFASKILSGPSEIPAVDKQQLIDDVRQALYASKICSYAQGLNLIREAGVQMGWNVNLGECARIWKGGCIIRAKFLDRIKAAYSKDASLISLLVDPDFAAELQARQYSWRRVVSLAVASGIPAPSFSGSLNYYDTFRRERLPANLTQAQRDFFGGHTYERTDRPGLFHCAWSDAHHSIGDVQERIRGNL 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15498.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLC9_ECTSI7.620e-14892.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
B7ZGN3_9PHAE5.150e-14286.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A836CLE8_9STRA3.880e-11874.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A7S2XZ87_9STRA3.080e-11571.056-phosphogluconate dehydrogenase, decarboxylating ... [more]
W7TN92_9STRA2.290e-11170.186-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A7S3XUE3_HETAK3.440e-11170.616-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A6U4GAQ4_9STRA1.520e-10866.67Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]
A0A6U4G148_9STRA3.490e-10666.676-phosphogluconate dehydrogenase, decarboxylating ... [more]
F0W5J1_9STRA9.950e-10665.796-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A2P4YKL3_9STRA6.280e-10565.79Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15498contigH-elongata_contig15498:6455..7595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.0
Seed ortholog evalue3.4e-118
Seed eggNOG ortholog2880.D7FLC9
KEGG rclassRC00001,RC00539
KEGG koko:K00033
KEGG ReactionR01528,R10221
KEGG Pathwayko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00004,M00006
EggNOG free text desc.D-gluconate metabolic process
EggNOG OGsCOG0362@1,KOG2653@2759
EC1.1.1.343,1.1.1.44
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description6-phosphogluconate dehydrogenase, C-terminal-like
Ec32 orthologEc-12_007690.1
Exons3
Model size687
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15498.3606.1prot_H-elongata_contig15498.3606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15498 6455..7589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.1597748-CDS-H-elongata_contig15498:6454..65831622929914.1597748-CDS-H-elongata_contig15498:6454..6583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 6455..6583 -
1691679206.3970969-CDS-H-elongata_contig15498:6454..65831691679206.3970969-CDS-H-elongata_contig15498:6454..6583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 6455..6583 -
1622929914.1942694-CDS-H-elongata_contig15498:6711..70321622929914.1942694-CDS-H-elongata_contig15498:6711..7032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 6712..7032 -
1691679206.4126186-CDS-H-elongata_contig15498:6711..70321691679206.4126186-CDS-H-elongata_contig15498:6711..7032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 6712..7032 -
1622929914.231133-CDS-H-elongata_contig15498:7358..75891622929914.231133-CDS-H-elongata_contig15498:7358..7589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 7359..7589 -
1691679206.4215763-CDS-H-elongata_contig15498:7358..75891691679206.4215763-CDS-H-elongata_contig15498:7358..7589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15498 7359..7589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.2552524-UTR-H-elongata_contig15498:7589..75951622929914.2552524-UTR-H-elongata_contig15498:7589..7595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15498 7590..7595 -
1691679206.4314125-UTR-H-elongata_contig15498:7589..75951691679206.4314125-UTR-H-elongata_contig15498:7589..7595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15498 7590..7595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15498.3606.1

>prot_H-elongata_contig15498.3606.1 ID=prot_H-elongata_contig15498.3606.1|Name=mRNA_H-elongata_contig15498.3606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MKGTGRWTIQEAAERSTAAPTMAAALDARYISGRKAERIEASKILRGPPA
IPRVPKEQLVEDIKAALYCSKICSYAQGMNLIKSASEHFEWGVDLGECAR
IWKGGCIIRAAFLDDIKRAYVRNPNLDNLLVDPDFSAQILKRQAAWRRVV
TLCISSGIAAPAMTASLSYFDSYRRARLPANLVQAQRDFFGAHTYERIDK
EGTFHCLWDDTHKDIGDVAGRIAGEL*
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mRNA from alignment at H-elongata_contig15498:6455..7595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15498.3606.1 ID=mRNA_H-elongata_contig15498.3606.1|Name=mRNA_H-elongata_contig15498.3606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-elongata_contig15498:6455..7595- (Himanthalia elongata Himel1 dioecious)
ACAGGCATGAAGGGCACTGGACGATGGACCATCCAGGAAGCGGCCGAGCG GAGCACTGCCGCACCGACCATGGCCGCCGCCCTCGATGCTCGTTATATTA GCGGTCGCAAGGCCGAGCGCATCGAGGCTTCCAAGATCCTCAGGGGACCC CCAGCTATTCCTAGAGTGCCCAAGGAGCAGCTAGTAGAAGACATAAAGGC AGCCCTATACTGCTCCAAGATATGCTCGTACGCCCAGGTGTGCATGCTAA TATACATTCTCTGCACCACTGGTAGGATTTACCTCGGTTTGGTTACAACG AAATTAACATGGTAGTGGTCTCTTGGAGGAATTTCCATCCCCCCGTTTAG ACGTAGTGTGATGCTTTACTGGATCGCGTTGGATTCTCTTTATTGATCCA ATATGTGTTCGTACGCCCTGAAGTGCATGCTGATACACGTTTTCTCTGCA CCACTCGCTGGGTTTACCTATCATTTTCGATATCGAAATTAACATGATGA TCAACCCCTCCTTTAAAATATTGCCTGGTGGTTTGCTTTTTGCCTCTCTG ATGCTCTCGATAGGGCATGAACCTCATCAAGAGCGCCTCTGAACACTTCG AGTGGGGCGTCGACCTTGGCGAGTGCGCGCGTATCTGGAAGGGTGGATGT ATTATCAGAGCCGCCTTCCTAGACGACATCAAGCGAGCCTACGTCCGTAA TCCTAATCTCGACAACTTGCTCGTCGACCCAGACTTCAGCGCTCAGATTT TGAAGCGACAAGCTGCGTGGAGGCGCGTCGTCACTCTCTGCATTTCGAGC GGGATCGCCGCGCCAGCCATGACGGCTTCCCTCTCCTACTTTGATTCCTA CCGCCGCGCCCGCTTACCGGCTAACCTGGTTCAGGTAAACAAGAAGCCCC TTCTCCGACCGCTGTTACCTTGAAGTGCTCGAAATCATCTTCATATTTAT TTGATTACCTCGATAGTCCTCGAAACATTCTTAACCGCCTCTGTGCTGCT CATTATCCCCAGGCCCAACGTGACTTCTTCGGGGCACACACTTACGAACG CATTGACAAGGAAGGCACCTTCCACTGCCTCTGGGACGACACTCACAAAG ACATCGGCGACGTCGCAGGGCGCATTGCTGGCGAATTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig15498:6455..7595-

>mRNA_H-elongata_contig15498.3606.1 ID=mRNA_H-elongata_contig15498.3606.1|Name=mRNA_H-elongata_contig15498.3606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig15498:6455..7595- (Himanthalia elongata Himel1 dioecious)
ATGAAGGGCACTGGACGATGGACCATCCAGGAAGCGGCCGAGCGGAGCAC
TGCCGCACCGACCATGGCCGCCGCCCTCGATGCTCGTTATATTAGCGGTC
GCAAGGCCGAGCGCATCGAGGCTTCCAAGATCCTCAGGGGACCCCCAGCT
ATTCCTAGAGTGCCCAAGGAGCAGCTAGTAGAAGACATAAAGGCAGCCCT
ATACTGCTCCAAGATATGCTCGTACGCCCAGATGAAGGGCACTGGACGAT
GGACCATCCAGGAAGCGGCCGAGCGGAGCACTGCCGCACCGACCATGGCC
GCCGCCCTCGATGCTCGTTATATTAGCGGTCGCAAGGCCGAGCGCATCGA
GGCTTCCAAGATCCTCAGGGGACCCCCAGCTATTCCTAGAGTGCCCAAGG
AGCAGCTAGTAGAAGACATAAAGGCAGCCCTATACTGCTCCAAGATATGC
TCGTACGCCCAGGGCATGAACCTCATCAAGAGCGCCTCTGAACACTTCGA
GTGGGGCGTCGACCTTGGCGAGTGCGCGCGTATCTGGAAGGGTGGATGTA
TTATCAGAGCCGCCTTCCTAGACGACATCAAGCGAGCCTACGTCCGTAAT
CCTAATCTCGACAACTTGCTCGTCGACCCAGACTTCAGCGCTCAGATTTT
GAAGCGACAAGCTGCGTGGAGGCGCGTCGTCACTCTCTGCATTTCGAGCG
GGATCGCCGCGCCAGCCATGACGGCTTCCCTCTCCTACTTTGATTCCTAC
CGCCGCGCCCGCTTACCGGCTAACCTGGTTCAGGGCATGAACCTCATCAA
GAGCGCCTCTGAACACTTCGAGTGGGGCGTCGACCTTGGCGAGTGCGCGC
GTATCTGGAAGGGTGGATGTATTATCAGAGCCGCCTTCCTAGACGACATC
AAGCGAGCCTACGTCCGTAATCCTAATCTCGACAACTTGCTCGTCGACCC
AGACTTCAGCGCTCAGATTTTGAAGCGACAAGCTGCGTGGAGGCGCGTCG
TCACTCTCTGCATTTCGAGCGGGATCGCCGCGCCAGCCATGACGGCTTCC
CTCTCCTACTTTGATTCCTACCGCCGCGCCCGCTTACCGGCTAACCTGGT
TCAGGCCCAACGTGACTTCTTCGGGGCACACACTTACGAACGCATTGACA
AGGAAGGCACCTTCCACTGCCTCTGGGACGACACTCACAAAGACATCGGC
GACGTCGCAGGGCGCATTGCTGGCGAATTGTGAGCCCAACGTGACTTCTT
CGGGGCACACACTTACGAACGCATTGACAAGGAAGGCACCTTCCACTGCC
TCTGGGACGACACTCACAAAGACATCGGCGACGTCGCAGGGCGCATTGCT
GGCGAATTGTGA
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