mRNA_H-elongata_contig15492.3603.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Match: A0A6H5L713_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L713_9PHAE) HSP 1 Score: 222 bits (565), Expect = 4.520e-59 Identity = 193/608 (31.74%), Postives = 260/608 (42.76%), Query Frame = 1
Query: 73 GSIQKTGSWARATGIMRRSPLIDALHPDIARQRAFQQNLQQSRR----LKTTQSITRDPPASTPPAARDVLS--PSASTYSA----------------GAAREAT-NTRERHRERGGLPVVACPRTILTSRSSTLAGRSKPLVVISPDHHE---------------------------------------VCSSNDTCKEDEDEVG-LTAQQWGRVKSWMARARDSLGPQAWECLGSGAAFRRAQDRI-REVLNPRSII--EDDAEGVFRSVVPDQGGNMSERAAMTGEHRNGVASFKSRVKRKIRTRADESGTRVG------------AKYRGRA--DQLAANLTLAIEAIIWALASEKEKSNTCAAVARERSRLVNRCSVRADGSGEDLGEGYTPELW-----------------------AASTELGISLPRARKFIKACRLIDGVHVLEPDVDLGFKRWEAKARLGGLNVTVAPS--------DTNN--VSKSCFS-------LPKRPRLCQAIGCSEVAQYGDIQPMATARVCRVHKHDGMVDVAGRRCERPNCGRFVVGVGGHMGTSSAALXXXXXXXXXXXVEGMVTVLFELANARFNRAR 1536
GS RA GI+RRSPLIDALHP++ARQR FQ +Q+RR L ++ I T A + + PSAST A AAR A N + + R G+ + ++ + R +P + + HE + + D +D G LT +Q RV+ W+ARA SLGP+ W CLGSG AFRR RI R ++ I D G + GG++ G R + K + R D + R A+ GR + L+ L EA+IW +A+E+E+ CAA+ + N R E G W AA+TEL ISL AR+FIK RL DG+HV++ DVDL FKRWE RL GL+ +P+ DT+ VS+ S +P ++C+A+GCS+ A+YGDI P A AR+CR H++ GMVDV RRCERP+CGR VG T+S L VEGM VL L+ AR R R
Sbjct: 1347 GSDAIANEKGRAPGIVRRSPLIDALHPEVARQREFQGKRRQARRRDASLPASEKIVHPADVETGTTASTIAAAGPSASTTDAERRAADARTSPIGAPNAAARAAIGNAKSTKKPRDGITAAVIASNSTDTTGASQSRRRRPRSLWAEKAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAALSEGASISRNVDNADDDASRAGRLTPEQSDRVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGCIGHAGDRRGGMENCECPPGGSVEPAPGAPGRSRRTARGGRKEGPHK-QARKDRAIDRXXXXXXXXXXXXXXARVDGRGWDEDLSERTALVTEAVIWTIATEREREAACAAIVEAHNENENGNDARERWDEEGNGTDRQATAWVKGGGSPGPQTIDIVHDSSAATSAATTELRISLSTARRFIKRSRLTDGIHVIDADVDLAFKRWEDVERLAGLDQQCSPTAAAACGEEDTSGRVVSREVGSGLADAAAVPIPQKVCEAVGCSDPARYGDIGPKAMARLCRKHRYSGMVDVGSRRCERPDCGRLAVGANATAKTTS--LCTRHARSDRVGVEGMAFVLLILSKARHTRRR 1951
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI) HSP 1 Score: 220 bits (561), Expect = 1.570e-58 Identity = 194/605 (32.07%), Postives = 267/605 (44.13%), Query Frame = 1
Query: 82 QKTGSWARATGIMRRSPLIDALHPDIARQRAFQQNLQQSRRLKTTQSITR------DPPASTPPAA---------------------------------------RDVLSPSASTYSAGAAREATNTRERHRERGGLP---------VVACPRTILTSRSS-TLAGRSKPLVVISPDHHEVCSSN-------DTCKEDEDEVG-LTAQQWGRVKSWMARARDSLGPQAWECLGSGAAFRRAQDRI-REVL----------NPRSIIEDDAEGVFRSVVPDQGGNMSERAAMTGEHRNGVASFKSRVKRKI-RTRADES-GTRVG--AKYRGRA--DQLAANLTLAIEAIIWALASEKEKSNTCAAVARERSRLVNRCSVRADGSGEDLGEGYTPELW-----------------------AASTELGISLPRARKFIKACRLIDGVHVLEPDVDLGFKRWEAKARLGGLNVTVAPS-----------------DTNNVSKSCFSLPKRPRLCQAIGCSEVAQYGDIQPMATARVCRVHKHDGMVDVAGRRCERPNCGRFVVGVGGHMGTSSAALXXXXXXXXXXXVEGMVTVLFELANARFNRAR 1536
+K + RA GI+RRSPLIDALHP++ARQR FQ + +R+ + D A T +A + P +T +A A +T+T R R P A P + + R+ + AG + L ++ S D+ +D G LT +Q RV+ W+ARA SLGP+ W CLGSG AFRR RI R ++ + R + E+ SV P GG R M E R ++R R I R R +E+ G R G A+ R+ + L+ L EA+IW +A+E+E+ CAA+A R+ N R E P W AA+TEL ISL AR+FIK RL DGVHV++ DVDL FKRWE RL GL+ +P+ + + ++P ++C+A+GCS+ A+YGDI P A AR+CR H+H+GMVDV RRC+RP+CGR VG H + +L VEGM VL L+ AR R R
Sbjct: 1316 KKDTNSGRAPGIVRRSPLIDALHPEVARQREFQGKRRHARQRDAAVPASEKTIHPADVEAGTTASAIAAAGPGXXXXXXXXXXXXXXXXXXXXXXXXXRAATGNAKSTKKPRDATTAAVVAGNSTDTAGASRSRRRRPRSLWAETAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAAFSEGASIPRNVDSPTDDASRAGRLTPKQSERVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGGTGHTEDRRDLTENRERPPGGSVKPAPGGPGRSRM-MAREGRKEAPHKQARKGRAIDRDREEENDGGREGGGARVDDRSWDEDLSERTALVTEAVIWTIATERERKTACAAIAEARNDNENGNDARERWDEEGKRTDRHPTAWGKGGGSPGRHTMDIVHDSSAATSAATTELRISLSTARRFIKRSRLTDGVHVIDADVDLAFKRWEEVERLAGLDQQCSPTAAVACGEEDKSGRVVSREVGSGLADAVAVPIPQKVCEAVGCSDPARYGDIGPKAKARLCRKHRHNGMVDVGSRRCDRPDCGRLAVGA--HTTAKATSLCTLHARSDRVDVEGMAFVLLMLSKARHTRRR 1917 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15492.3603.1 >prot_H-elongata_contig15492.3603.1 ID=prot_H-elongata_contig15492.3603.1|Name=mRNA_H-elongata_contig15492.3603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=513bp KVSVNFVWPRPDRVCITKCLRPSDGSIQKTGSWARATGIMRRSPLIDALHback to top mRNA from alignment at H-elongata_contig15492:1952..4074+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15492.3603.1 ID=mRNA_H-elongata_contig15492.3603.1|Name=mRNA_H-elongata_contig15492.3603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2123bp|location=Sequence derived from alignment at H-elongata_contig15492:1952..4074+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15492:1952..4074+ >mRNA_H-elongata_contig15492.3603.1 ID=mRNA_H-elongata_contig15492.3603.1|Name=mRNA_H-elongata_contig15492.3603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3078bp|location=Sequence derived from alignment at H-elongata_contig15492:1952..4074+ (Himanthalia elongata Himel1 dioecious)back to top |