prot_H-elongata_contig154837.3600.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig154837.3600.1
Unique Nameprot_H-elongata_contig154837.3600.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.640e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 0 
Query:    1 MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGE 56
            M TGI+ L +QAFGA+NNRLVGV FARGTLLTA +F +PV  LW+YM+ +++  G+
Sbjct:   99 MGTGIELLCAQAFGAKNNRLVGVAFARGTLLTAFLF-IPVAFLWFYMENIMLAFGQ 153
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: UPI0002C37858 (MATE efflux family protein LAL5-like isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C37858)

HSP 1 Score: 51.2 bits (121), Expect = 1.000e-5
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:    1 MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSDTTATVFY 67
            +ATG+D +ASQAFGA+N  L+     R T+++ LIF +P+ +LW+Y + V++  G+  S T+  + Y
Sbjct:  127 LATGMDGIASQAFGARNGCLLSHTLQR-TIISLLIFSMPIALLWFYFEPVLIFSGQNSSITSTAITY 192
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: C5DEA2_LACTC (KLTH0C07524p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) TaxID=559295 RepID=C5DEA2_LACTC)

HSP 1 Score: 48.5 bits (114), Expect = 8.910e-5
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    1 MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSD 60
            +AT +DTL  QAFGA+  +LVG+ F RG L  +L+F  P+ +LW+Y +++   LG  V D
Sbjct:   89 LATCLDTLCPQAFGAKQYQLVGLYFQRG-LAISLVFACPIALLWWYSELM---LGAMVDD 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ37_9PHAE1.640e-1260.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0002C378581.000e-540.30MATE efflux family protein LAL5-like isoform X1 n=... [more]
C5DEA2_LACTC8.910e-545.00KLTH0C07524p n=1 Tax=Lachancea thermotolerans (str... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002528Multi antimicrobial extrusion proteinPFAMPF01554MatEcoord: 1..51
e-value: 1.1E-5
score: 25.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..46
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154837contigH-elongata_contig154837:1013..1228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154837.3600.1mRNA_H-elongata_contig154837.3600.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig154837 1001..1228 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig154837.3600.1 ID=prot_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIV
VVTLGETVSDTTATVFYTVCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002528MATE_fam