mRNA_H-elongata_contig154800.3599.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL) HSP 1 Score: 53.5 bits (127), Expect = 3.590e-6 Identity = 26/83 (31.33%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
W DSG T H+ H S ++ +T+ + N +P+ G G+IE++V T + + + DV Y P + +LLS AV+
Sbjct: 229 WTIDSGCTRHVTHESQWFSTISASNGSITVGVK--NQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA) HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5 Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKA 243
W D+G T H+ TR Y+ + +I+ A L G G IE + +++++DV YVPGISRNL S L A
Sbjct: 296 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA) HSP 1 Score: 52.0 bits (123), Expect = 1.380e-5 Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKA 243
W D+G T H+ TR Y+ + +I+ A L G G IE + +++++DV YVPGISRNL S L A
Sbjct: 269 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A2P4XU07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU07_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 4.090e-5 Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
W D G T H+ H S A+ G +I + N +P+ G GR+E++V T + + + V Y P + +LLS AV+
Sbjct: 153 WTIDPGCTRHVTHESQWFSDI--AASGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQNLILHGVLYAPQLQFSLLSVPAAVK 233
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 6.210e-5 Identity = 25/83 (30.12%), Postives = 42/83 (50.60%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVE 249
W DSG T H+ H + + G +I + N +P+ G GR+E++V T +++ + V Y P + +LLS AV+
Sbjct: 205 WTIDSGCTRHVSHESQWFTDI--TTSGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVK 285
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A6A3YSJ5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YSJ5_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 7.070e-5 Identity = 24/76 (31.58%), Postives = 39/76 (51.32%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLL 228
W DSG T H+ H S ++ G +I + N +P+ G GR+E++V K++ + DV Y P + +LL
Sbjct: 129 WTIDSGCTRHVTHEAQWFSNI--SASGGSITVGGKNQIPIEGIGRVELEVIDSKRNMKKLILHDVLYAPQLHFSLL 202
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Match: A0A6A4DDX6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DDX6_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 7.480e-5 Identity = 29/95 (30.53%), Postives = 48/95 (50.53%), Query Frame = 1
Query: 1 WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVDQPSHTTKRVKMDDVAYVPGISRNLLSTLKAVEQWEKPLIYDREK 285
W DSG T H+ H S ++ G +I + N +P+ G GR+E++V K++ + V Y P + +LLS AV+ + +DR+K
Sbjct: 138 WTIDSGCTRHVTHEAQWFSNI--SASGGSITVGGKNQIPIEGIGRVELEVIDYKGNMKKLILHGVLYAPQLHFSLLSLSAAVKH-DFRFSFDRKK 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154800.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154800.3599.1 >prot_H-elongata_contig154800.3599.1 ID=prot_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp WESDSGVTFHILHTRAGMSAYKKASPGMTIEIADGNTLPVNGFGRIEMDVback to top mRNA from alignment at H-elongata_contig154800:1219..1506- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154800.3599.1 ID=mRNA_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig154800:1219..1506- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154800:1219..1506- >mRNA_H-elongata_contig154800.3599.1 ID=mRNA_H-elongata_contig154800.3599.1|Name=mRNA_H-elongata_contig154800.3599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig154800:1219..1506- (Himanthalia elongata Himel1 dioecious)back to top |