mRNA_H-elongata_contig154752.3598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154752.3598.1
Unique NamemRNA_H-elongata_contig154752.3598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A0U1WNP6_SARFS (NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxID=3009 RepID=A0A0U1WNP6_SARFS)

HSP 1 Score: 444 bits (1141), Expect = 4.840e-152
Identity = 213/253 (84.19%), Postives = 234/253 (92.49%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLWSFEERE LMEFYERVSGARMHASY RPGGVS D+ +G++D IYAFVGQFGQRLDEMEEMLT NRIWQERLVDIG+VTA++A+NWGF GVMLRGSGVRWDLR+NE YE+YS+L FKGVVG TGDCY RYLAR+EEMRQSLSIIHQC+NNMP+GS+KVDD K+ PPSR E+KQ+ ESLIHHFKLYTEGVSV  GETY+ATEAPKGEFGV LVSDGSNRPY RCKIKAPGFSHLQGLNFM+KSHMLADVVT+I
Sbjct:  135 FLWSFEEREKLMEFYERVSGARMHASYFRPGGVSLDMGLGLLDDIYAFVGQFGQRLDEMEEMLTDNRIWQERLVDIGVVTAEDAVNWGFSGVMLRGSGVRWDLRKNEPYEIYSDLRFKGVVGKTGDCYDRYLARIEEMRQSLSIIHQCINNMPRGSVKVDDTKICPPSRCEMKQNMESLIHHFKLYTEGVSVPFGETYTATEAPKGEFGVYLVSDGSNRPY-RCKIKAPGFSHLQGLNFMAKSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit n=72 Tax=Phaeophyceae TaxID=2870 RepID=NDUS2_PYLLI)

HSP 1 Score: 437 bits (1124), Expect = 1.840e-149
Identity = 212/253 (83.79%), Postives = 236/253 (93.28%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW+FEERE LMEFYERVSGARMHASY RPGGVS+DISVG++D I+AFV QFGQRLDE+EEMLT NRIWQERLVDIG+V+AQEAI+WGF GVMLRGSG+RWDLR+NE YE+YS+L+F+GVVG TGDCY RYLARVEEMRQSLSII+QCLN MP+GS+K+DDAK+SPPSRSEVKQS ESLIHHFKLYTEGV V AGETY+ATEAPKGEFGV LVS GS+RPY RCKIKAPGFSHLQGLNFM+ SHMLADVVT+I
Sbjct:  135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNKMPRGSVKIDDAKISPPSRSEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPY-RCKIKAPGFSHLQGLNFMACSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A8F0K0U0_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0U0_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 3.250e-145
Identity = 209/253 (82.61%), Postives = 229/253 (90.51%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW FEERE LMEFYERVSGARMHASY RPGGVS+DIS+G+I+ IYAF  QFGQRLDEMEEMLT NRIWQERLVDIG VTAQ+AINWGF GVMLRGSGV WDLR+NE YE YSEL+F+  VG TGDCY RYL R+EEMRQSLS+I+QCLNNMP+GSIK +DAK+SPPSR+EVKQ+ ESLIHHFKLYTEGV V AGETY+ATEAPKGEFGV LVSDGS RPY RCKIKAPGF+HLQGLNFM+KSHMLADVVT+I
Sbjct:  135 FLWGFEEREKLMEFYERVSGARMHASYFRPGGVSQDISLGLIEDIYAFGAQFGQRLDEMEEMLTDNRIWQERLVDIGRVTAQQAINWGFSGVMLRGSGVLWDLRKNEPYETYSELNFQAAVGKTGDCYDRYLVRIEEMRQSLSLIYQCLNNMPRGSIKSEDAKISPPSRTEVKQNMESLIHHFKLYTEGVVVPAGETYTATEAPKGEFGVYLVSDGSPRPY-RCKIKAPGFAHLQGLNFMTKSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A4D6E538_9PHAE (NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E538_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 2.640e-144
Identity = 203/253 (80.24%), Postives = 232/253 (91.70%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLWSFEERE LMEFYERVSGARMHASY RPGGVS+DI++G+I+ I++F  QFGQRLDE+EEMLT NRIWQERLVDIG+V++QEAI+WGF GVMLRGSGVRWDLR+NE Y+ YSEL F+GVVG  GDCY RYL R++EMRQSLSII+QCLN +P+GSIKVDD+K++PPSR++VKQS ESLIHHFKLYTEGV+V +GETY+ATEAPKGEFGV LVSDGSNRPY RCKIKAPGFSHLQ LNFMS SHMLADVVT+I
Sbjct:  135 FLWSFEEREKLMEFYERVSGARMHASYFRPGGVSQDITIGLIEDIFSFSAQFGQRLDEVEEMLTDNRIWQERLVDIGVVSSQEAIDWGFSGVMLRGSGVRWDLRKNEPYDAYSELSFQGVVGKMGDCYDRYLVRIDEMRQSLSIIYQCLNKIPEGSIKVDDSKITPPSRADVKQSMESLIHHFKLYTEGVTVPSGETYTATEAPKGEFGVYLVSDGSNRPY-RCKIKAPGFSHLQALNFMSNSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A7S6UA25_9STRA (Nad7 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA25_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 2.660e-134
Identity = 190/253 (75.10%), Postives = 222/253 (87.75%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW FEERE LMEFYERVSGARMHA+YIRPGG+S+DIS+G++D IY F  QF  RLDEMEEMLT NRIW++RLVDIG V+A EA++WGF GVMLRGSG+ WDLR+++ YEVY +LDF   +G  GDCY RYL RVEEMRQSL II+QCLN MP+GS+K+DDAK+SPP+RS++KQS ESLIHHFKLY+EGV V AGETY+ATEAPKGEFGV L+S+GSNRPY RCKIKAPGF HLQ L+FMSKSHM+ADVVT+I
Sbjct:  135 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGLSQDISLGLLDDIYLFANQFATRLDEMEEMLTANRIWKQRLVDIGRVSAAEALDWGFSGVMLRGSGISWDLRKHQPYEVYEKLDFHIPIGTNGDCYDRYLLRVEEMRQSLGIIYQCLNQMPKGSVKIDDAKISPPTRSQMKQSMESLIHHFKLYSEGVLVPAGETYTATEAPKGEFGVYLISNGSNRPY-RCKIKAPGFGHLQALDFMSKSHMVADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A4Y5T7J7_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7J7_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 4.980e-132
Identity = 187/253 (73.91%), Postives = 220/253 (86.96%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLWSFEERE LMEFYERVSGARMHASY RPGGVS+D+S+G+++ I++F  QFGQRLDE+EEMLT N IW+ RLVDIG+VTA++A++WGF GVMLRGSG+ WDLR+N+ YE+Y  + F   VG  GDC+ RY  RV+EMRQSLSI+HQCLNN+P GSIKVDDAK+SPPSR++VKQS E+LIHHFKLYTEG  V  GETY+ATEAPKGEFGV L+S+G+NRPY RCKIKAPGF HLQ LNFMS SHMLADVVT+I
Sbjct:  135 FLWSFEEREKLMEFYERVSGARMHASYFRPGGVSQDLSLGLLNDIHSFCDQFGQRLDEVEEMLTSNPIWKLRLVDIGVVTAKQAVDWGFSGVMLRGSGILWDLRKNQPYEIYPGIKFDVPVGIHGDCFDRYTVRVQEMRQSLSIVHQCLNNIPVGSIKVDDAKISPPSRADVKQSMEALIHHFKLYTEGTLVPVGETYTATEAPKGEFGVYLISNGTNRPY-RCKIKAPGFGHLQALNFMSNSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: Q2TU97_DICDH (NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU97_DICDH)

HSP 1 Score: 388 bits (997), Expect = 3.270e-130
Identity = 186/253 (73.52%), Postives = 218/253 (86.17%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW+FEERE LMEFYERVSGARMHASY RPGGVS+D+S+GI++ IY+F  QFG RLDE+EEMLT N IW+ RLVDIG+VTA+EA++WGF GVMLRGSG+ WDLR+N+ YEVY E+ F   VG  GDC+ RY  R++EMRQSL+I++QCLN MPQGS+KVDD K+SPPSR E+KQ+ E+LIHHFKLYTEGV V  GETY ATEAPKGEFGV L+S+G+NRPY RCKIKAPGFSHLQ LN MS SHMLADVVT+I
Sbjct:  135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDLSLGILNDIYSFCNQFGHRLDEIEEMLTSNPIWKLRLVDIGVVTAREAVDWGFSGVMLRGSGLIWDLRKNQPYEVYPEIKFDIPVGVNGDCFDRYTIRIQEMRQSLNILYQCLNKMPQGSVKVDDYKISPPSRVELKQNMEALIHHFKLYTEGVLVPVGETYIATEAPKGEFGVYLISNGTNRPY-RCKIKAPGFSHLQALNLMSSSHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: F1DPM6_COCSC (NADH dehydrogenase subunit 7 n=4 Tax=Trebouxiophyceae TaxID=75966 RepID=F1DPM6_COCSC)

HSP 1 Score: 383 bits (983), Expect = 4.310e-128
Identity = 180/253 (71.15%), Postives = 218/253 (86.17%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW FEERE LMEFYERVSGARMHA+YIRPGGV++D+ +G+ + IY F  QF  R+DEMEEMLT NRIW++RLVD+G+VTA +A++WGF GVMLRGSG+ WDLR+ + Y+VYS++DF+  VG  GDCY RYL RVEEMRQSL +I QCL  MPQG IK DD K++PPSRS++KQS ESLIHHFKLYTEG +V AGETY+A EAPKGEFGV LVS+G+NRPY RCKI+APGF+HLQGL+FM+++HMLADVVT+I
Sbjct:  135 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGVAQDLPIGLSEDIYRFARQFASRIDEMEEMLTNNRIWKQRLVDVGVVTADQALDWGFSGVMLRGSGIGWDLRKTQPYDVYSKMDFQVPVGSRGDCYDRYLIRVEEMRQSLRMIMQCLQEMPQGLIKSDDRKITPPSRSQMKQSMESLIHHFKLYTEGFAVPAGETYTAVEAPKGEFGVFLVSNGTNRPY-RCKIRAPGFAHLQGLDFMARNHMLADVVTII 386          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Reclinomonas americana TaxID=48483 RepID=NDUS2_RECAM)

HSP 1 Score: 380 bits (977), Expect = 3.260e-127
Identity = 182/253 (71.94%), Postives = 214/253 (84.58%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW FEERE LMEFYERVSGARMHA+YIRPGGVS+D+ +G+ + IY F  QFG R+DE+E++L+ NRIW++RLVDIG V+A+EA++WGF GVMLRGSG+ WDLR+ + Y+VY EL+F   VG  GDCY RYL RVEEMRQSL +I QCLN MP G IKVDD K+SPPSR ++K S E+LIHHFKLYTEG SV  GETY+A EAPKGEFGV LVSDGS++PY RCKIKAPGFSHLQGLNFMSK HM+ADVVT+I
Sbjct:  133 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPMGLSEDIYKFAKQFGSRIDEIEDVLSSNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLRKTQPYDVYDELEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNKMPTGVIKVDDKKISPPSRVDMKDSMEALIHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPY-RCKIKAPGFSHLQGLNFMSKGHMIADVVTII 384          
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Match: A0A1S5R1X0_9CHLO (NADH dehydrogenase subunit 7 n=1 Tax=Cymbomonas tetramitiformis TaxID=36881 RepID=A0A1S5R1X0_9CHLO)

HSP 1 Score: 380 bits (977), Expect = 3.490e-127
Identity = 183/253 (72.33%), Postives = 214/253 (84.58%), Query Frame = 2
Query:  374 FLWSFEERENLMEFYERVSGARMHASYIRPGGVSRDISVGIIDYIYAFVGQFGQRLDEMEEMLTYNRIWQERLVDIGIVTAQEAINWGF*GVMLRGSGVRWDLRENEHYEVYSELDFKGVVG*TGDCYYRYLARVEEMRQSLSIIHQCLNNMPQGSIKVDDAKVSPPSRSEVKQSKESLIHHFKLYTEGVSVGAGETYSATEAPKGEFGVCLVSDGSNRPYVRCKIKAPGFSHLQGLNFMSKSHMLADVVTVI 1132
            FLW+FEERE LMEFYERVSGARMHA+YIRPGGVS+DI VG++  IY F  QF  R+DE+EEMLT NRIW++RLV+IGIV+ +EA+NWGF GVMLRGSG+ WDLR ++ YEVY +++F   VG  GDCY RYL RVEEMRQSL II QCLNNMP+G IK DD KV+PPSR+++K S ESLIHHFK Y+EG SV  GETYSA EAPKGEFGV LVS+G+NRPY RCKI+APGF HLQ L+FMSK+HMLADVVT+I
Sbjct:  135 FLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSQDIPVGLLKDIYTFTEQFASRIDELEEMLTNNRIWKQRLVNIGIVSGEEALNWGFSGVMLRGSGISWDLRRSQPYEVYDQMNFDIPVGLRGDCYDRYLCRVEEMRQSLRIISQCLNNMPEGLIKTDDRKVTPPSRTQMKTSMESLIHHFKYYSEGFSVPIGETYSAIEAPKGEFGVYLVSNGTNRPY-RCKIRAPGFVHLQALDFMSKNHMLADVVTII 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154752.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1WNP6_SARFS4.840e-15284.19NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxI... [more]
NDUS2_PYLLI1.840e-14983.79NADH-ubiquinone oxidoreductase 49 kDa subunit n=72... [more]
A0A8F0K0U0_9PHAE3.250e-14582.61NADH dehydrogenase subunit 7 n=1 Tax=Analipus japo... [more]
A0A4D6E538_9PHAE2.640e-14480.24NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae... [more]
A0A7S6UA25_9STRA2.660e-13475.10Nad7 n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
A0A4Y5T7J7_9PHAE4.980e-13273.91NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris ... [more]
Q2TU97_DICDH3.270e-13073.52NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dich... [more]
F1DPM6_COCSC4.310e-12871.15NADH dehydrogenase subunit 7 n=4 Tax=Trebouxiophyc... [more]
NDUS2_RECAM3.260e-12771.94NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 ... [more]
A0A1S5R1X0_9CHLO3.490e-12772.33NADH dehydrogenase subunit 7 n=1 Tax=Cymbomonas te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154752contigH-elongata_contig154752:2..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue8.8e-16
Seed eggNOG ortholog3055.EDP00001
KEGG rclassRC00061
KEGG koko:K03935
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
EggNOG free text desc.Belongs to the complex I 49 kDa subunit family
EggNOG OGs34JA3@3041,37S7T@33090,COG0649@1,KOG2870@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size1170
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154752.3598.1prot_H-elongata_contig154752.3598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154752 203..391 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.5602522-UTR-H-elongata_contig154752:1..2021622929913.5602522-UTR-H-elongata_contig154752:1..202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154752 2..202 +
1691679206.159755-UTR-H-elongata_contig154752:1..2021691679206.159755-UTR-H-elongata_contig154752:1..202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154752 2..202 +
1622929913.5827055-UTR-H-elongata_contig154752:391..11711622929913.5827055-UTR-H-elongata_contig154752:391..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154752 392..1171 +
1691679206.1803133-UTR-H-elongata_contig154752:391..11711691679206.1803133-UTR-H-elongata_contig154752:391..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154752 392..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.5729582-CDS-H-elongata_contig154752:202..3911622929913.5729582-CDS-H-elongata_contig154752:202..391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154752 203..391 +
1691679206.1725514-CDS-H-elongata_contig154752:202..3911691679206.1725514-CDS-H-elongata_contig154752:202..391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154752 203..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154752.3598.1

>prot_H-elongata_contig154752.3598.1 ID=prot_H-elongata_contig154752.3598.1|Name=mRNA_H-elongata_contig154752.3598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MMCEEHTTYVLAVETLLQISIPRRSQYIRGLFAEITRILNHLLAVGCHAM
DVGAMTPFFMVF*
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mRNA from alignment at H-elongata_contig154752:2..1171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154752.3598.1 ID=mRNA_H-elongata_contig154752.3598.1|Name=mRNA_H-elongata_contig154752.3598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig154752:2..1171+ (Himanthalia elongata Himel1 dioecious)
CTTCAGCATTTTACAATAAATTTTGGACCTCAACACCCAGCAGCACGTGG GGTTCTTCGTCTTATTCTTGAATTAAATGGTGAGGTAGTTCAACGGGCAG ATCCACATATTGGTCTTCTTCATAGAGGTACTGAAAAATTGATTGAGTCT CAAACGTATGTTCAGGCGCTGCCTTATTTTGATCGTTTAGATTATGTCTC AATGATGTGCGAAGAACACACTACTTATGTTTTAGCTGTGGAAACATTAT TGCAAATATCTATCCCAAGACGGTCACAATATATTAGAGGTCTTTTTGCC GAAATTACTAGAATTTTAAATCACTTATTGGCTGTGGGTTGTCATGCAAT GGATGTAGGAGCTATGACTCCTTTTTTTATGGTCTTTTGAAGAAAGGGAA AATCTTATGGAGTTTTACGAAAGAGTTAGTGGTGCTCGGATGCATGCTAG TTATATTAGGCCTGGTGGTGTTAGTCGGGATATAAGTGTAGGTATTATAG ATTATATTTATGCTTTTGTTGGTCAATTTGGTCAACGGTTAGATGAAATG GAAGAAATGTTAACATATAATCGAATCTGGCAAGAAAGATTAGTAGATAT TGGAATAGTAACTGCGCAAGAGGCTATTAACTGGGGATTTTAAGGCGTTA TGCTAAGAGGGTCAGGGGTAAGATGGGATTTAAGGGAAAATGAACACTAT GAAGTATATTCTGAATTAGATTTCAAAGGTGTTGTTGGTTAAACAGGTGA TTGTTATTACCGGTATTTGGCAAGAGTGGAAGAAATGCGACAATCTTTAA GTATTATACACCAGTGTTTAAATAATATGCCACAAGGAAGCATCAAGGTA GATGATGCTAAAGTAAGTCCACCATCGCGTAGTGAGGTTAAACAAAGCAA GGAATCTTTAATTCACCACTTTAAATTGTATACGGAAGGTGTCTCAGTAG GTGCTGGTGAAACTTATAGTGCTACTGAGGCACCTAAAGGAGAATTCGGT GTTTGTTTAGTATCCGATGGTAGTAATCGCCCATATGTCAGGTGTAAAAT TAAAGCTCCTGGGTTTTCTCATTTACAAGGTCTTAATTTTATGTCTAAAT CTCATATGTTAGCTGATGTAGTAACAGTTATTTGGCGCAAGATATAGTTT TCGGTGAGGTTGATCGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig154752:2..1171+

>mRNA_H-elongata_contig154752.3598.1 ID=mRNA_H-elongata_contig154752.3598.1|Name=mRNA_H-elongata_contig154752.3598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig154752:2..1171+ (Himanthalia elongata Himel1 dioecious)
ATGATGTGCGAAGAACACACTACTTATGTTTTAGCTGTGGAAACATTATT
GCAAATATCTATCCCAAGACGGTCACAATATATTAGAGGTCTTTTTGCCG
AAATTACTAGAATTTTAAATCACTTATTGGCTGTGGGTTGTCATGCAATG
GATGTAGGAGCTATGACTCCTTTTTTTATGGTCTTTTGAATGATGTGCGA
AGAACACACTACTTATGTTTTAGCTGTGGAAACATTATTGCAAATATCTA
TCCCAAGACGGTCACAATATATTAGAGGTCTTTTTGCCGAAATTACTAGA
ATTTTAAATCACTTATTGGCTGTGGGTTGTCATGCAATGGATGTAGGAGC
TATGACTCCTTTTTTTATGGTCTTTTGA
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