prot_H-elongata_contig15471.3594.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15471.3594.1
Unique Nameprot_H-elongata_contig15471.3594.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.300e-29
Identity = 69/187 (36.90%), Postives = 100/187 (53.48%), Query Frame = 0
Query:    6 KVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRN 177
            K  ++GKV+K+K  LVA+GF Q+ NV +  + SP P                  L+H++VKQ +    +D+E+++ I   Y   S  + Q  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    MV+V +VDDIL    D    +   A L +KF  K+ G+  ++ GC I R+
Sbjct:   10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRD 195          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 119 bits (299), Expect = 5.630e-28
Identity = 69/192 (35.94%), Postives = 109/192 (56.77%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNR 178
            ++K K   DG +EKYK RLVA+GF QVE + YT+T++P                 D ++   +VK  FL  D+D+EIY+     +   +G+V +L K++YGL  A   W  K   +   +GFE++ AD  +F KV +G   +++  +VDD+L    D  TID F + L ++F++ D+G AR+ +G  I R+R
Sbjct: 1038 VFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDR 1228          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 119 bits (297), Expect = 1.040e-27
Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR 181
            ++K K   DG++EKYK RLVA+GF QVE+V Y ET++PT                D E+H  +VK  FL  D+D+EIY+A    +      V +L KA+YGL  A   W  K   +  ++GF+++ AD  VF K VDG   +V + +VDD+L  A   + ID   A L +KF + D+G+A + +   I R+R  R
Sbjct:  998 VFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACPPGFEDRPDIVWRLRKALYGLKQASRQWYKKIRAEFESLGFKRSDADHGVFYKEVDGSLVIVAL-YVDDMLIFADKVSAIDSVKASLKEKFDMTDLGEAHWVLNMEIIRDRPNR 1191          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 117 bits (294), Expect = 2.650e-27
Identity = 70/195 (35.90%), Postives = 110/195 (56.41%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR 181
            ++K K   DG++EKYK RLVA+GF QVE + + ET++P                 D E+H  +VK  FL  D+D+EIY+ +   + R +  V +LNKA+YGL  AG  W  K   +  A+GF +  +D  VF K  DG   ++ + +VDD+L  + +   +     +L  +F++ D+G+AR+ +G  ITR+R  R
Sbjct:  975 VFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDGILLIIAI-YVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRR 1168          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A2P6SKU2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SKU2_ROSCH)

HSP 1 Score: 117 bits (293), Expect = 3.450e-27
Identity = 74/193 (38.34%), Postives = 105/193 (54.40%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRK 179
            ++K K + DGKVE+YK RLVA+G+ Q E + Y ET+SP                 D ELH  +VK  FL  D+ +EIY+   E +      V +L K+IYGL  A   W  KF   +T  GF + K D C++ K   G   ++++ +VDDIL  + +   +    A L  +F +KDMG+A Y +G  ITRNRK
Sbjct:  551 VFKTKKDADGKVERYKARLVAKGYNQKEGIDYNETFSPVSTKDAFRVVMALVAHFDLELHQMDVKTAFLNGDLHEEIYMLQPEGFAEDESKVCKLKKSIYGLKQASRQWYLKFDKVITQFGFLENKLDECIYLKT-SGSNFILLILYVDDILLASSNICLLKETKAFLLSQFDMKDMGEAHYVLGIEITRNRK 742          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 116 bits (291), Expect = 6.650e-27
Identity = 67/195 (34.36%), Postives = 108/195 (55.38%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR 181
            ++K K   DG+VEKYK RLVAQGF QVE + Y ET++P                 D E+H  +VK  FL  ++++EIY+ +   +   + AV +L KA+YGL  A   W  K   ++  +GF + +AD CVF K +D    ++ V +VDD +  +     + +  ++LG +F + D+G+  + +   +TRNR+ R
Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQER 1237          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 115 bits (289), Expect = 1.200e-26
Identity = 66/187 (35.29%), Postives = 105/187 (56.15%), Query Frame = 0
Query:   10 DGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR 181
            DG++EKYK RLVA+GF QVE + + ET++P                 D E+H  +VK  FL  D+D+EIY+ +   + R +  + +LNKA+YGL  AG  W  K   +  A+GF +  +D  VF K  DG   ++ + +VDD+L  + +   +     +L  +F++ D+G+AR+ +G  I R+R  R
Sbjct:  660 DGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDGILLIIAI-YVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRR 845          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A446P7W8_TRITD (Uncharacterized protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446P7W8_TRITD)

HSP 1 Score: 115 bits (287), Expect = 2.270e-26
Identity = 72/197 (36.55%), Postives = 111/197 (56.35%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLS--GAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR 181
            ++K+K+   G+V+KYK RLVA+GF Q+E V + ET+SP                 D ELH  +VK  FL   +++EIY+   E ++     G V +LNK+IYGL  A   W   F + +T+ GF   + D C++ K++ G   +++  +VDDIL  + D +T+      L  KF +KDMG+A Y +G  I R+R+ R
Sbjct:  892 IFKRKLNATGQVDKYKARLVAKGFTQMEGVDFVETFSPVAKFTSIRIISALTAYYDLELHQMDVKTSFLNGMLEEEIYMNKPEGFVERGNEGKVCKLNKSIYGLKQASRQWYILFDNAITSYGFSMTEGDHCIYFKIM-GNKFVLLSLYVDDILIASNDKSTLMEVKTWLSSKFDMKDMGEASYVLGVEIRRDRRKR 1087          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A2P6QXG4_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QXG4_ROSCH)

HSP 1 Score: 115 bits (287), Expect = 2.360e-26
Identity = 69/194 (35.57%), Postives = 111/194 (57.22%), Query Frame = 0
Query:    2 LYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLS-GAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRK 179
            +YK K   DG +E+YK RLVA+G+ QVE V Y ET+SPT                +  LH  +V+  FL  D+ +E+Y+     + R     V +LNK++YGL  A   W +KF + +   G+ Q+KAD  +F +VV G +   V+ +VDDI+    D   I+   A L ++F++KD+G+ +Y++G  ++R++K
Sbjct: 1238 VYKIKYNSDGTIERYKARLVAKGYTQVEGVDYCETFSPTAKLTTFRCLLAIAASRNWSLHQMDVQNAFLHGDLHEEVYMLPPPGFSRQGENLVCRLNKSLYGLKQASRNWFSKFSNAIQKAGYRQSKADYSLFTRVV-GNSFTAVLIYVDDIVITGNDPKAIELLKAFLHKEFRIKDLGNLKYFLGIEVSRSKK 1430          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.180e-26
Identity = 66/190 (34.74%), Postives = 103/190 (54.21%), Query Frame = 0
Query:    6 KVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKA 180
            K  ++GK++ +K RLVA+GF Q+ NV Y  + SP P                  L+H++VKQ +    +D+E+++ +       S  + +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    M++V +VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +A
Sbjct:  791 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEA 979          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIS9_9PHAE6.300e-2936.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU5.630e-2835.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y9XTU1_9APHY1.040e-2738.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A401G4V0_9APHY2.650e-2735.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6SKU2_ROSCH3.450e-2738.34Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A0C2WN23_AMAMK6.650e-2734.36Integrase catalytic domain-containing protein (Fra... [more]
A0A401H123_9APHY1.200e-2635.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A446P7W8_TRITD2.270e-2636.55Uncharacterized protein n=3 Tax=Triticum turgidum ... [more]
A0A2P6QXG4_ROSCH2.360e-2635.57Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A6H5KSG8_9PHAE4.180e-2634.74Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..176
e-value: 5.3E-29
score: 101.6
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15471contigH-elongata_contig15471:1363..1953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15471.3594.1mRNA_H-elongata_contig15471.3594.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15471 619..1968 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15471.3594.1 ID=prot_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDEELHHFNV
KQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFC
DDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRF
AAELGQKFKLKDMGDARYYMGCHITRNRKAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2