mRNA_H-elongata_contig15471.3594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15471.3594.1
Unique NamemRNA_H-elongata_contig15471.3594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 2.920e-71
Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V +K  +  K  ++GK++ +K RLVA+GF Q+ NV Y  + SP P                  L+H++VKQ +    +D+E+++ +       S  + +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    M++V +VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +A  L+I Q  +++SM+E F++K +S+IPAT G        GP   +E+ G  ++P REA+G +M  +T  +PD++ AVRAVA             + KI+ Y    +D GI Y  +G GL +  Y D ++    D R SVSG+   +    +S  S+ Q + +  ++EAEYIA  E VK  +F R +  F+       ++ V ++N+G I L  N  ++ +TKHI+V++H ++ +  + ++ V +V + +QHADL TK L
Sbjct:  782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 4.740e-71
Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V +K  +  K  ++GK++ +K RLVA+GF Q+ NV Y  + SP P                  L+H++VKQ +    +D+E+++ +       S  + +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    M++V +VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +A  L+I Q  +++SM+E F++K +S+IPAT G        GP   +E+ G  ++P REA+G +M  +T  +PD++ AVRAVA             + KI+ Y    +D GI Y  +G GL +  Y D ++    D R SVSG+   +    +S  S+ Q + +  ++EAEYIA  E VK  +F R +  F+       ++ V ++N+G I L  N  ++ +TKHI+V++H ++ +  + ++ V +V + +QHADL TK L
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 4.810e-71
Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V +K  +  K  ++GK++ +K RLVA+GF Q+ NV Y  + SP P                  L+H++VKQ +    +D+E+++ +       S  + +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    M++V +VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +A  L+I Q  +++SM+E F++K +S+IPAT G        GP   +E+ G  ++P REA+G +M  +T  +PD++ AVRAVA             + KI+ Y    +D GI Y  +G GL +  Y D ++    D R SVSG+   +    +S  S+ Q + +  ++EAEYIA  E VK  +F R +  F+       ++ V ++N+G I L  N  ++ +TKHI+V++H ++ +  + ++ V +V + +QHADL TK L
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 4.880e-71
Identity = 156/458 (34.06%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V +K  +  K  ++GK++ +K RLVA+GF Q+ NV Y  + SP P                  L+H++VKQ +    +D+E+++ +       S  + +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+VD    M++V +VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +A  L+I Q  +++SM+E F++K +S+IPAT G        GP   +E+ G  ++P REA+G +M  +T  +PD++ AVRAVA             + KI+ Y    +D GI Y  +G GL +  Y D ++    D R SVSG+   +    +S  S+ Q + +  ++EAEYIA  E VK  +F R +  F+       ++ V ++N+G I L  N  ++ +TKHI+V++H ++ +  + ++ V +V + +QHADL TK L
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 4.060e-70
Identity = 137/396 (34.60%), Postives = 221/396 (55.81%), Query Frame = 1
Query:  148 LHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVAV-------------MKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            L HF++KQ F++ D+D+++++ + E   RLSG + +LNK++YGL  A   W++     +  +GF Q  AD CVFR + +G   + +V HVDDI +  ++    D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  + E +   F ++   +IP   G+  LS+ D      + E +  +P+RE +G LM  AT  +PDIA+AVRAVA              + I+ Y     D GI +  G   GL +E + D ++      R SVSG ++M   G IS +SR Q+     T+EAEY++L++ +K V+F R +  FM     +  + VF++N+G I+L  N  +N  +KHI+V+HH ++++   + + + +V S  QHAD  TK L
Sbjct:   35 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 4.190e-69
Identity = 139/397 (35.01%), Postives = 220/397 (55.42%), Query Frame = 1
Query:  145 ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            +L HF+V+Q F++ ++++++Y+ + +    LSG + +L K++YGL  A   W+      + A+GFEQ  AD CVFR + DG   +++V HVDDI A   +    D+F A+L +   +K++G+ R+Y GC   RN++   L I Q  F + +   + +     +P +SGV  LS  D        E   +FP+RE VG LM  AT  +PDIA+AVRAVA              M I+ Y      +GI +  G   G  ++ Y D +F      R SVSG ++    GA+S +SR Q+     T+EAEY+AL + VK ++F R I  FM   + +  + VF++N+G I+L  N  +N  +KHI+V+HH ++++ + + + V +V S  Q AD  TK L
Sbjct:   58 DLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.340e-68
Identity = 149/458 (32.53%), Postives = 242/458 (52.84%), Query Frame = 1
Query:    4 VGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V +K  +  K  +DGK+EK+K RLVA+GF Q+ NV Y  + SP P                 +L+H++VKQ F    +D+++++ +       S  V +  +AIYGL  +G  W     D +   GFEQ KAD CVFRK+ D           D IL    D        A L + F  KD+G+  ++ GC + R+ +A  L+I Q  +++S++  F+++ +S IPA+ GV       GP   +E  G  ++P REA+G +M  +T  +PDI+ AVRAVA             ++KI+ Y    +D GI Y  +G GL +  Y D ++    D R SVSG+   +    IS  S+ Q + +  ++EAEYIA  E VK  +F R +  F+       ++ V ++N+G + L  N  ++ ++KHI+V++H ++ +  + ++ + +V + +QHAD+ TK L
Sbjct:   45 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDD-DCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDI-----GPKRDDESGG--EWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAEDRR-SVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKAL 492          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 2.500e-68
Identity = 137/396 (34.60%), Postives = 221/396 (55.81%), Query Frame = 1
Query:  148 LHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVAV-------------MKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            L HF++KQ F++ D+D+++++ + E   RLSG + +LNK++YGL  A   W++     +  +GF Q  AD CVFR + +G   + +V HVDDI +  ++    D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  + E +   F ++   +IP   G+  LS+ D      + E +  +P+RE +G LM  AT  +PDIA+AVRAVA              + I+ Y     D GI +  G   GL +E + D ++      R SVSG ++M   G IS +SR Q+     T+EAEY++L++ +K V+F R +  FM     +  + VF++N+G I+L  N  +N  +KHI+V+HH ++++   + + + +V S  QHAD  TK L
Sbjct:  209 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.100e-65
Identity = 146/460 (31.74%), Postives = 248/460 (53.91%), Query Frame = 1
Query:    1 VVGTKMLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDE---------------ELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAAELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYG-GQGCGLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            V+  + ++K K ++ GK+ K K RLVA+GF Q   V Y ET+SPT +                EL H++++Q F++ ++D E+++ +      +SG V +LNK++YGL  A   +  +   ++  IGFEQ+ +D CV R ++  E   +V  HVDDIL +A   +  +   A LG     K++G+ R+++GC   R+R+A  +++ Q  ++ S+LE FN+ ++S IPA+      S         E EG    P+RE VG LM  A   +PDI++AVRAVA               KI+ Y        + +            Y D +F    + R SVSG ++++    +   S+ Q+  +  TSEAEY+A+ + VK  +F   + +F+  S +   ++V ++N+G I L  N  ++ ++KHI+V+HH ++++++   + V +V SE+QHAD+ TK L
Sbjct:  492 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVM-------EDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943          
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.430e-65
Identity = 146/454 (32.16%), Postives = 241/454 (53.08%), Query Frame = 1
Query:   31 KVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTP---------------DEELHHFNVKQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFCDDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRFAA----ELGQKFKLKDMGDARYYMGCHITRNRKAR*LKIDQHLFVESMLETFNIKKSSKIPATSGVPTLSKADGPWNPEEKEGMRKFPYREAVGVLMGTATMMQPDIASAVRAVA-------------VMKIMEYFFHMKDWGIIYGGQGC-GLCIEAYTD*NFGFCLDTR*SVSGMMLMLVKGAIS*YSRMQQMTASGTSEAEYIALSEAVK*VIFFRHIQEFMELSMRVGAVNVFDENKGTIKLTTNKHANCKTKHINVKHHIVKDVSDAQNVRVAYVRSEDQHADLFTKPL 1293
            +V   GK+ K K RLVA+GF Q   V Y ET+SPT                D E  HF+++Q F++ ++D E+++ +      ++G V +L+K++YGL  A   ++ +   D+  IGFEQ+ +D CV   ++  E   ++  HVDDIL     +A I+R A      LG     K++G+ R+++GC   R+R+A  +++ Q  ++ S+LE FN+ ++S IPA+      S         E EG    P+R+ VG LM  A   +PDI++AVRAVA               KI+ Y        + Y       +    Y D +F      R S SG ++++    ++  SR Q+     T+EAEY+A+ + VK  +F + + EF+  S R+G + V ++N+G I L  N  ++C +KHI+V+HH+ +++++   + + +V SE QHAD+ TK L
Sbjct:  203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDIL-----YAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVI-------EDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKAL 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15471.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE2.920e-7134.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.740e-7134.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.810e-7134.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.880e-7134.06Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JLN0_9PHAE4.060e-7034.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE4.190e-6935.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE1.340e-6832.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.500e-6834.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.100e-6531.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KN43_9PHAE1.430e-6532.16Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15471contigH-elongata_contig15471:619..1968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.8
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog3827.XP_004516035.1
EggNOG free text desc.DNA RNA polymerases superfamily protein
EggNOG OGs388SY@33090,3GND2@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1305
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15471.3594.1prot_H-elongata_contig15471.3594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15471 1363..1953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.2261617-UTR-H-elongata_contig15471:618..13621622929913.2261617-UTR-H-elongata_contig15471:618..1362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15471 619..1362 -
1691679205.994344-UTR-H-elongata_contig15471:618..13621691679205.994344-UTR-H-elongata_contig15471:618..1362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15471 619..1362 -
1622929913.2656345-UTR-H-elongata_contig15471:1953..19681622929913.2656345-UTR-H-elongata_contig15471:1953..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15471 1954..1968 -
1691679206.0244315-UTR-H-elongata_contig15471:1953..19681691679206.0244315-UTR-H-elongata_contig15471:1953..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15471 1954..1968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.2421083-CDS-H-elongata_contig15471:1362..17851622929913.2421083-CDS-H-elongata_contig15471:1362..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15471 1363..1785 -
1691679206.005672-CDS-H-elongata_contig15471:1362..17851691679206.005672-CDS-H-elongata_contig15471:1362..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15471 1363..1785 -
1622929913.25363-CDS-H-elongata_contig15471:1830..19531622929913.25363-CDS-H-elongata_contig15471:1830..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15471 1831..1953 -
1691679206.015664-CDS-H-elongata_contig15471:1830..19531691679206.015664-CDS-H-elongata_contig15471:1830..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15471 1831..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15471.3594.1

>prot_H-elongata_contig15471.3594.1 ID=prot_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MLYKKKVEQDGKVEKYKYRLVAQGFWQVENVHYTETYSPTPDEELHHFNV
KQVFLKVDIDDEIYIAISEEYLRLSGAVEQLNKAIYGLVLAGGCWNNKFC
DDMTAIGFEQAKADICVFRKVVDGEAEMVVVGHVDDILAHAKDHATIDRF
AAELGQKFKLKDMGDARYYMGCHITRNRKAR*
back to top

mRNA from alignment at H-elongata_contig15471:619..1968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15471.3594.1 ID=mRNA_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig15471:619..1968- (Himanthalia elongata Himel1 dioecious)
GTGGTCGGCACAAAAATGCTCTACAAGAAAAAGGTCGAACAGGACGGCAA GGTCGAGAAGTACAAGTACCGACTTGTCGCTCAAGGGTTCTGGCAGGTGG AAAATGTGCACTACACGGAAACGTACTCGCCCACGCCAGTGATCGCCTCA ATACGGATGATTTTGGCGACAGCAGTGGTCAAGGACGAAGAGCTGCACCA TTTCAACGTGAAGCAGGTATTCTTGAAGGTGGACATCGACGATGAAATAT ACATTGCGATCTCCGAGGAGTACCTGAGGCTTTCGGGGGCAGTGGAACAG CTGAACAAGGCCATTTACGGACTCGTACTGGCGGGGGGATGCTGGAACAA CAAGTTCTGTGATGACATGACGGCGATTGGATTCGAGCAGGCAAAGGCGG ATATATGCGTGTTCCGTAAGGTTGTTGACGGCGAGGCGGAAATGGTGGTG GTCGGACACGTGGACGACATTCTTGCCCACGCCAAAGACCACGCGACGAT TGATAGATTCGCGGCTGAGCTTGGGCAGAAGTTCAAATTGAAGGACATGG GCGACGCCAGGTACTACATGGGCTGTCACATCACGAGAAACCGCAAGGCG CGCTAGTTGAAGATCGATCAACACTTGTTCGTGGAGTCGATGTTGGAAAC TTTCAACATCAAGAAGTCAAGCAAAATACCTGCTACATCGGGGGTGCCAA CACTCTCAAAGGCAGACGGACCGTGGAATCCGGAGGAGAAGGAAGGAATG AGGAAGTTTCCTTACCGAGAGGCAGTGGGGGTGCTTATGGGGACCGCAAC AATGATGCAGCCGGACATTGCGAGCGCAGTGCGCGCTGTGGCAGTGATGA AGATAATGGAGTATTTCTTTCACATGAAGGATTGGGGGATTATATATGGT GGACAAGGCTGTGGACTCTGCATAGAGGCATACACGGACTAGAATTTTGG ATTCTGCCTGGATACGAGATGATCGGTGTCGGGTATGATGTTGATGCTGG TAAAGGGGGCGATCAGCTAGTACTCAAGGATGCAACAAATGACAGCATCG GGTACTTCGGAGGCAGAGTATATTGCTTTATCAGAAGCGGTAAAATAGGT TATATTTTTTAGACATATTCAGGAGTTCATGGAACTGTCAATGAGGGTCG GTGCAGTAAATGTTTTCGATGAAAATAAGGGGACCATCAAGCTGACCACC AACAAGCATGCTAATTGTAAGACAAAACACATTAATGTAAAACACCATAT AGTGAAGGATGTGTCTGATGCGCAAAACGTTAGAGTAGCGTATGTGAGGT CGGAAGATCAGCACGCGGACTTGTTCACCAAGCCACTAGACACGCAGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15471:619..1968-

>mRNA_H-elongata_contig15471.3594.1 ID=mRNA_H-elongata_contig15471.3594.1|Name=mRNA_H-elongata_contig15471.3594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig15471:619..1968- (Himanthalia elongata Himel1 dioecious)
ATGCTCTACAAGAAAAAGGTCGAACAGGACGGCAAGGTCGAGAAGTACAA
GTACCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAAATGTGCACTACA
CGGAAACGTACTCGCCCACGCCAATGCTCTACAAGAAAAAGGTCGAACAG
GACGGCAAGGTCGAGAAGTACAAGTACCGACTTGTCGCTCAAGGGTTCTG
GCAGGTGGAAAATGTGCACTACACGGAAACGTACTCGCCCACGCCAGACG
AAGAGCTGCACCATTTCAACGTGAAGCAGGTATTCTTGAAGGTGGACATC
GACGATGAAATATACATTGCGATCTCCGAGGAGTACCTGAGGCTTTCGGG
GGCAGTGGAACAGCTGAACAAGGCCATTTACGGACTCGTACTGGCGGGGG
GATGCTGGAACAACAAGTTCTGTGATGACATGACGGCGATTGGATTCGAG
CAGGCAAAGGCGGATATATGCGTGTTCCGTAAGGTTGTTGACGGCGAGGC
GGAAATGGTGGTGGTCGGACACGTGGACGACATTCTTGCCCACGCCAAAG
ACCACGCGACGATTGATAGATTCGCGGCTGAGCTTGGGCAGAAGTTCAAA
TTGAAGGACATGGGCGACGCCAGGTACTACATGGGCTGTCACATCACGAG
AAACCGCAAGGCGCGCTAGGACGAAGAGCTGCACCATTTCAACGTGAAGC
AGGTATTCTTGAAGGTGGACATCGACGATGAAATATACATTGCGATCTCC
GAGGAGTACCTGAGGCTTTCGGGGGCAGTGGAACAGCTGAACAAGGCCAT
TTACGGACTCGTACTGGCGGGGGGATGCTGGAACAACAAGTTCTGTGATG
ACATGACGGCGATTGGATTCGAGCAGGCAAAGGCGGATATATGCGTGTTC
CGTAAGGTTGTTGACGGCGAGGCGGAAATGGTGGTGGTCGGACACGTGGA
CGACATTCTTGCCCACGCCAAAGACCACGCGACGATTGATAGATTCGCGG
CTGAGCTTGGGCAGAAGTTCAAATTGAAGGACATGGGCGACGCCAGGTAC
TACATGGGCTGTCACATCACGAGAAACCGCAAGGCGCGCTAG
back to top