mRNA_H-elongata_contig154630.3590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154630.3590.1
Unique NamemRNA_H-elongata_contig154630.3590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.670e-45
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 REELLNCATTRAVAANLFFSFGTVDDRGQVTLQPYDLRRMLQSMGVVVSEDKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSGQRGFL 315
            REEL+  AT RAVAANLFFSFGTV + G+VTLQP+DL RMLQSMGVVVSEDKL++MV RADK++TG ISEDDFLEAFDWLM QGQDERDYMAIFNML   Q G++
Sbjct:   85 REELMMSATERAVAANLFFSFGTVGEDGEVTLQPHDLSRMLQSMGVVVSEDKLSQMVSRADKDATGCISEDDFLEAFDWLMSQGQDERDYMAIFNMLDKDQNGYV 189
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BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Match: A0A7S2E2N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2N9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.970e-5
Identity = 24/86 (27.91%), Postives = 41/86 (47.67%), Query Frame = 1 
Query:   58 SFGTVDDRGQVTLQPYDLRRMLQSMGVVVSEDKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSGQRGFL 315
            +F   D  G  T+ P +L+  +QS+G       + RM+   DK+STG I  D+FL+     M     + D   +F++      G++
Sbjct:    3 AFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYRMIEDIDKDSTGEIDFDEFLDIMTARMSDKDSKEDIQKVFSLFDDDNTGYI 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Y4_ECTSI1.670e-4578.10N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECT... [more]
A0A7S2E2N9_9STRA5.970e-527.91Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154630contigH-elongata_contig154630:188..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.6e-38
Seed eggNOG ortholog2880.D7G1Y4
KEGG rclassRC00002,RC00003,RC00060,RC00181,RC00496
KEGG koko:K00939,ko:K02183,ko:K11423,ko:K13800
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R03875,R03938,R04866,R04867,R11319,R11891,R11892
KEGG Pathwayko00230,ko00240,ko00310,ko00730,ko00983,ko01100,ko01110,ko01130,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00230,map00240,map00310,map00730,map00983,map01100,map01110,map01130,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00049,M00052
EggNOG free text desc.cytidylate kinase activity
EggNOG OGsCOG0563@1,COG5126@1,KOG0027@2759,KOG3079@2759
EC2.1.1.43,2.7.4.14,2.7.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylate kinase/UMP-CMP kinase
Ec32 orthologEc-07_003680.1
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.9490862-CDS-H-elongata_contig154630:187..3641622929912.9490862-CDS-H-elongata_contig154630:187..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154630 188..364 -
1691679205.9269335-CDS-H-elongata_contig154630:187..3641691679205.9269335-CDS-H-elongata_contig154630:187..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154630 188..364 -
1622929912.9703956-CDS-H-elongata_contig154630:1257..13951622929912.9703956-CDS-H-elongata_contig154630:1257..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154630 1258..1395 -
1691679205.940306-CDS-H-elongata_contig154630:1257..13951691679205.940306-CDS-H-elongata_contig154630:1257..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154630 1258..1395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154630.3590.1prot_H-elongata_contig154630.3590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154630 188..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154630.3590.1

>prot_H-elongata_contig154630.3590.1 ID=prot_H-elongata_contig154630.3590.1|Name=mRNA_H-elongata_contig154630.3590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
REELLNCATTRAVAANLFFSFGTVDDRGQVTLQPYDLRRMLQSMGVVVSE
DKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSG
QRGFL
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mRNA from alignment at H-elongata_contig154630:188..1395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154630.3590.1 ID=mRNA_H-elongata_contig154630.3590.1|Name=mRNA_H-elongata_contig154630.3590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1208bp|location=Sequence derived from alignment at H-elongata_contig154630:188..1395- (Himanthalia elongata Himel1 dioecious)
AGGGAAGAGCTTTTGAACTGCGCGACGACTCGAGCGGTAGCCGCGAACCT
CTTCTTCAGCTTCGGTACGGTGGACGATCGAGGACAGGTCACCCTACAGC
CGTACGATCTCCGGAGAATGCTGCAGTCTATGGGGGTGGTGAGTGCTCGA
GGTTGTTGTATTTTTCGTCGTGACGTGAAGTGAAGTGAAATAAAATGAGC
CTGTGTGTGTGTATTTATTAAATTTGACATAACCGCGCAATCCGGCGGCT
CTGTCGTGCTAGCTCTTCTAGGCTACTCTCGCATTGATCCTCCCAATGAG
AGATTCAATCATATTTGCTGCATGTTTGTGTTCGGGCGAGGGGGTGTATT
GTTACACGCATGTCGGGATGGAACGATATGCCGGGTTTTCGCCGACCAGG
TTGCGTGTTTCACAAGAAGATATTATGCCAGCTGTTAGTCGCCATCCTCG
CGTTTGCTACGCAAAACTGGACATGTCATGGGCTAATTAATATCCCGGGT
AACCAACCGTTGCAAATTCAGCGGGCGCGACCATGCTCCGAGTATTGCAG
AGCGGCTTTGATCTACACTCGAACGCATAAGTGCTGCGCGTACACAGCAT
GCTCAAACGGTATATGCTGTATACACTCAAGACTACGATATTTGGGTCCC
CTGGGCTGCACCTCTCACGGTGCTAAGAAAGCGTGGATGCTCAAAGGGCT
TGAATTGAGTTTTATAGAGTGTATGGTTGATTTATTGCTTTCCAAATATC
GTTTTTTTTCAGGAGGCACCCTTTCGATTGTGGTATGTATGATTCACCCC
TTACGGAAGAGACACGACTGACTCTTCGAGCGAGACTTCTGAGTTCATAA
GGCGCACACATACTCCATGAAGTAACTAACTCTCGAAGGTCCTGACGAAG
AGAATACAATCACAGAATTTATCGTATCGAAAGGGTGATTGGGGAGGGTG
TGATCTCGTCTTGTCCCGCTCCACGCATTGTGCGTGCCCCGAACCCTCGC
GGCTTGAAATCCCCCCCCCCCTCCCCCCCAGGTGGTGTCCGAGGATAAGT
TGAACCGGATGGTTGTCCGGGCGGACAAGAACTCGACGGGATATATCTCG
GAAGACGATTTCCTGGAAGCTTTCGACTGGCTCATGCTGCAGGGCCAAGA
CGAGCGAGACTACATGGCGATCTTCAATATGCTGGTGAGCGGACAGCGAG
GATTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig154630:188..1395-

>mRNA_H-elongata_contig154630.3590.1 ID=mRNA_H-elongata_contig154630.3590.1|Name=mRNA_H-elongata_contig154630.3590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig154630:188..1395- (Himanthalia elongata Himel1 dioecious)
AGGGAAGAGCTTTTGAACTGCGCGACGACTCGAGCGGTAGCCGCGAACCT
CTTCTTCAGCTTCGGTACGGTGGACGATCGAGGACAGGTCACCCTACAGC
CGTACGATCTCCGGAGAATGCTGCAGTCTATGGGGGTGAGGGAAGAGCTT
TTGAACTGCGCGACGACTCGAGCGGTAGCCGCGAACCTCTTCTTCAGCTT
CGGTACGGTGGACGATCGAGGACAGGTCACCCTACAGCCGTACGATCTCC
GGAGAATGCTGCAGTCTATGGGGGTGGTGGTGTCCGAGGATAAGTTGAAC
CGGATGGTTGTCCGGGCGGACAAGAACTCGACGGGATATATCTCGGAAGA
CGATTTCCTGGAAGCTTTCGACTGGCTCATGCTGCAGGGCCAAGACGAGC
GAGACTACATGGCGATCTTCAATATGCTGGTGAGCGGACAGCGAGGATTC
CTCGTGGTGTCCGAGGATAAGTTGAACCGGATGGTTGTCCGGGCGGACAA
GAACTCGACGGGATATATCTCGGAAGACGATTTCCTGGAAGCTTTCGACT
GGCTCATGCTGCAGGGCCAAGACGAGCGAGACTACATGGCGATCTTCAAT
ATGCTGGTGAGCGGACAGCGAGGATTCCTC
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