mRNA_H-elongata_contig154537.3587.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154537.3587.1
Unique NamemRNA_H-elongata_contig154537.3587.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.410e-40
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVTR 264
            +K WFG+ D+FP +RLYTRKAGS+ +SYVAPATKRYLLDDPAGSR+QMVH GVKVFERNS AR  IEFR+CQEGL VVLP MTKRVTR
Sbjct:  740 IKTWFGMRDDFPVDRLYTRKAGSRTISYVAPATKRYLLDDPAGSRLQMVHTGVKVFERNSQARCAIEFRVCQEGLGVVLPYMTKRVTR 827          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.480e-40
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVTR 264
            +K WFG+ D+FP +RLYTRKAGS+ +SYVAPATKRYLLDDPAGSR+QM+H GVKVFERNS AR  IEFR+CQEGL VVLP MTKRVTR
Sbjct:  530 IKTWFGMRDDFPVDRLYTRKAGSRTISYVAPATKRYLLDDPAGSRLQMIHTGVKVFERNSQARCAIEFRVCQEGLGVVLPYMTKRVTR 617          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D8LYS4_BLAHO (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYS4_BLAHO)

HSP 1 Score: 70.1 bits (170), Expect = 4.450e-12
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRV 258
            ++ ++GI D F ++ +Y+R A   ++ YV P      L   +  R+++V+ G+K+FE NS  +    +RICQEGL V+ P MTKRV
Sbjct:  544 LRAFYGISDAFDWDLIYSRSANHHILLYVDPVVNALCLRSRSAKRLKVVNTGLKLFEYNSR-KCECAYRICQEGLPVLRPFMTKRV 628          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: W2QBX4_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QBX4_PHYPN)

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-10
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
            +K ++GI D FP+E LY+R  G+  V  V P+ +  +L   AG    ++  G++VF R   A   + FR+ +EGLD +LP +TKR
Sbjct:  518 IKEFYGIADSFPHENLYSRSVGTSSVCLVNPSIREAIL---AGEHPHILDTGLRVFARVQAAGKRLWFRLTEEGLDQMLPFITKR 599          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A8K1C4V8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4V8_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-10
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
            +K  FG+  EF   +L TR   +K V++V  +    LL++    ++++V+ G+K+FERN     +  +R+CQ GL + LP +TKR
Sbjct:  542 IKNCFGLTPEFSSAQLITRSDEAKAVTFVTKSITMELLEEMKAKKLKVVYTGIKMFERNDLPDGSKTYRLCQMGLSMALPFVTKR 626          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A7S4PHY5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PHY5_GUITH)

HSP 1 Score: 63.2 bits (152), Expect = 8.550e-10
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   10 WFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRV 258
            ++GI ++FP ++L++       V +V+   K+ L  D  G ++  VHAGVK+FERNS   +  E+R+ QEG+  ++P M+KRV
Sbjct:   70 FYGIKEDFPADQLFSSSETGNKVYFVSAEVKQMLGADIRG-QLHTVHAGVKMFERNSAKGNIFEYRLRQEGVPFLMPYMSKRV 151          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A0P1AJD8_PLAHL (Trna (Cytosine-5-)-methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJD8_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 2.310e-9
Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTK 252
            V+ ++ I   F  E+L TR   +K V++V  +    LL++    ++Q+V+AG+K+FERN        +R+CQ GL  +LP M K
Sbjct:  519 VRDYYDITTTFSAEQLITRSEDAKSVTFVTESITMALLEEMKRKKMQVVYAGLKMFERNETTEGGKVYRVCQAGLPHILPFMNK 602          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: D0NVM2_PHYIT (tRNA (Cytosine-5-)-methyltransferase NSUN2-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NVM2_PHYIT)

HSP 1 Score: 62.0 bits (149), Expect = 3.090e-9
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
            +K ++GI D+FPYE LY+R  G+  V  V+ + +  +L   AG +  ++  G++VF R       + FR+ ++GL+ +LP +TKR
Sbjct:  474 IKEFYGIADDFPYENLYSRSEGTSSVCVVSSSIRGAIL---AGEQPHILDTGLRVFARVQAVGKRLWFRLTEDGLEQMLPYITKR 555          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A6A3MPZ1_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MPZ1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.880e-9
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVT 261
            +K ++GI D FP+E LY+R  G+  V  V P+ +  +L   AG    ++  G++VF R   A   + FR  +EGL+ +LP +TKR T
Sbjct:  492 IKEFYGISDRFPHENLYSRSEGTASVCLVNPSIREAIL---AGEHANILDTGLRVFAR-VQAAGKLVFRPTEEGLERLLPFITKRKT 574          
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Match: A0A1W0A149_9STRA (tRNA (Cytosine-5-)-methyltransferase NSUN2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A149_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.470e-8
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVHAGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKR 255
            ++ ++G+  EF +ERL+ R  G+  +SYV+ A ++  L   AG+ + +V+ GVKVF + +   S   FR  QEGL++++P MTKR
Sbjct:  514 IQEFYGLTPEFRHERLFARSKGAATLSYVSHAVQQACL---AGNALNLVNTGVKVFVKVTTG-SHKGFRPSQEGLELLVPHMTKR 594          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154537.3587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5LDC1_9PHAE1.410e-4079.55SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
D8LLJ3_ECTSI1.480e-4078.41SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
D8LYS4_BLAHO4.450e-1238.37SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
W2QBX4_PHYPN1.000e-1038.82SAM_MT_RSMB_NOP domain-containing protein n=11 Tax... [more]
A0A8K1C4V8_PYTOL1.880e-1035.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4PHY5_GUITH8.550e-1038.55Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A0P1AJD8_PLAHL2.310e-935.71Trna (Cytosine-5-)-methyltransferase n=1 Tax=Plasm... [more]
D0NVM2_PHYIT3.090e-935.29tRNA (Cytosine-5-)-methyltransferase NSUN2-like pr... [more]
A0A6A3MPZ1_9STRA7.880e-937.93SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=... [more]
A0A1W0A149_9STRA1.470e-838.82tRNA (Cytosine-5-)-methyltransferase NSUN2 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154537contigH-elongata_contig154537:917..1526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D8LLJ3
KEGG koko:K15334,ko:K15335
EggNOG free text desc.tRNA (cytosine-5-)-methyltransferase activity
EggNOG OGsCOG0144@1,KOG2198@2759
EC2.1.1.202,2.1.1.203
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.684709-CDS-H-elongata_contig154537:916..10421622929912.684709-CDS-H-elongata_contig154537:916..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154537 917..1042 -
1691679205.8178635-CDS-H-elongata_contig154537:916..10421691679205.8178635-CDS-H-elongata_contig154537:916..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154537 917..1042 -
1622929912.7018964-CDS-H-elongata_contig154537:1385..15261622929912.7018964-CDS-H-elongata_contig154537:1385..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154537 1386..1526 -
1691679205.8282409-CDS-H-elongata_contig154537:1385..15261691679205.8282409-CDS-H-elongata_contig154537:1385..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154537 1386..1526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154537.3587.1prot_H-elongata_contig154537.3587.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154537 917..1526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154537.3587.1

>prot_H-elongata_contig154537.3587.1 ID=prot_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
VKGWFGIGDEFPYERLYTRKAGSKVVSYVAPATKRYLLDDPAGSRIQMVH
AGVKVFERNSNARSTIEFRICQEGLDVVLPCMTKRVTR*
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mRNA from alignment at H-elongata_contig154537:917..1526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154537.3587.1 ID=mRNA_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig154537:917..1526- (Himanthalia elongata Himel1 dioecious)
GTGAAGGGTTGGTTTGGTATCGGCGACGAGTTTCCCTACGAGAGACTGTA CACGAGGAAAGCGGGTTCGAAGGTTGTTTCCTACGTGGCGCCGGCCACGA AGCGGTACCTTCTGGACGACCCGGCCGGGTCGCGCATCCAGGTGACAAGG GGGTCGAGGAGTAAATTATTTAGTGTAGCATTTCTCCTAGTTGTTGCCGA TTGCGCGCGATGAGCGGTGGTCAGATTCAATACGGGCTTGATCAGGCCTT TGAACCCAGTTGAGATCATGTAACCCGGGTGACCTTTGTGCTCTTCAATG TATGGCGATTGGCGATGCTATGTGACAAAACGTCGGCCACTGATGGCCCA GAGCTAACTCCAGACCTCGATCTTGTTTGTGGTTTCGAGGGTGCCTTTGT ACGGTATCATCACCCGTTGAAAGACAAAGCCGATCACCGCCCCCTTTTAG TACCACGTCTGACTACTTGCTCTCACGTCGCCAGATGGTGCACGCTGGGG TCAAGGTCTTCGAAAGGAATAGTAACGCCCGGAGCACCATAGAGTTCCGG ATTTGCCAGGAGGGGCTCGACGTCGTGCTGCCCTGCATGACCAAGCGCGT CACGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig154537:917..1526-

>mRNA_H-elongata_contig154537.3587.1 ID=mRNA_H-elongata_contig154537.3587.1|Name=mRNA_H-elongata_contig154537.3587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig154537:917..1526- (Himanthalia elongata Himel1 dioecious)
GTGAAGGGTTGGTTTGGTATCGGCGACGAGTTTCCCTACGAGAGACTGTA
CACGAGGAAAGCGGGTTCGAAGGTTGTTTCCTACGTGGCGCCGGCCACGA
AGCGGTACCTTCTGGACGACCCGGCCGGGTCGCGCATCCAGGTGAAGGGT
TGGTTTGGTATCGGCGACGAGTTTCCCTACGAGAGACTGTACACGAGGAA
AGCGGGTTCGAAGGTTGTTTCCTACGTGGCGCCGGCCACGAAGCGGTACC
TTCTGGACGACCCGGCCGGGTCGCGCATCCAGATGGTGCACGCTGGGGTC
AAGGTCTTCGAAAGGAATAGTAACGCCCGGAGCACCATAGAGTTCCGGAT
TTGCCAGGAGGGGCTCGACGTCGTGCTGCCCTGCATGACCAAGCGCGTCA
CGAGGTAGATGGTGCACGCTGGGGTCAAGGTCTTCGAAAGGAATAGTAAC
GCCCGGAGCACCATAGAGTTCCGGATTTGCCAGGAGGGGCTCGACGTCGT
GCTGCCCTGCATGACCAAGCGCGTCACGAGGTAG
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