mRNA_H-elongata_contig154465.3583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154465.3583.1
Unique NamemRNA_H-elongata_contig154465.3583.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: D8LGJ4_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.070e-26
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQQLS 189
            DTPAQARSSNM  DLGQVEYVFSDKTGTLTQN+MKFKRCSVGG IYG++ Q +KDLMTPQQL+
Sbjct:  415 DTPAQARSSNMGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYGELDQKSKDLMTPQQLT 477
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A6H5JDV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.830e-22
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   31 MAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQQLS 189
            M  DLGQVEYVFSDKTGTLTQN+MKFKRCSVGG IYG++ Q +KDLMTPQQLS
Sbjct:    1 MGADLGQVEYVFSDKTGTLTQNLMKFKRCSVGGVIYGELDQQSKDLMTPQQLS 53
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A836CHZ9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.990e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQQLS 189
            DTPA AR+SNM  DLGQV+Y+FSDKTGTLTQNVM FKRC+VG +IYG+I +  +  +TP QL+
Sbjct:  524 DTPALARTSNMNADLGQVQYIFSDKTGTLTQNVMTFKRCAVGDTIYGEITEEERSKLTPMQLA 586
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A7S2SIW9_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIW9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 6.590e-18
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQQLSVRKG 201
            DTPA AR+SN  GDLGQ+EYVFSDKTGTLT N MKF+RCSVGG IYG+I  G  D     ++   +G
Sbjct:  235 DTPALARTSNQNGDLGQIEYVFSDKTGTLTCNEMKFRRCSVGGEIYGNIDGGGGDAQDGDEVDQEQG 301
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A7S2G4K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4K0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.670e-17
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGD 144
            DTPA AR+SN  GD+GQ+EY+FSDKTGTLTQN M+F+R SVGG+IYGD
Sbjct:  107 DTPALARTSNQNGDIGQIEYIFSDKTGTLTQNEMRFRRSSVGGNIYGD 154
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: UPI00087091A9 (phospholipid-transporting ATPase IA-like n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00087091A9)

HSP 1 Score: 82.4 bits (202), Expect = 2.780e-16
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQQL 186
            DTPA+AR+SN+  +LG V YVFSDKTGTLT NVMKFKRCS+GG I+GDI  G    M P+++
Sbjct:  308 DTPAKARTSNLNEELGAVRYVFSDKTGTLTCNVMKFKRCSIGGQIFGDIETG----MDPKEI 365
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A183N0M6_9TREM (Uncharacterized protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183N0M6_9TREM)

HSP 1 Score: 77.0 bits (188), Expect = 4.660e-16
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGD 144
            DTPA AR+SN+  +LGQV Y+FSDKTGTLT+NVM+FKRCS+GG +YG+
Sbjct:    7 DTPAMARTSNLNEELGQVRYLFSDKTGTLTRNVMEFKRCSIGGIMYGN 54
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A6J3QYH1_TURTR (Phospholipid-transporting ATPase n=2 Tax=Delphinidae TaxID=9726 RepID=A0A6J3QYH1_TURTR)

HSP 1 Score: 81.3 bits (199), Expect = 7.080e-16
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 TPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQ--GAKDLMTPQQLSV 192
            TPAQAR++ +  +LGQ+EYVFSDKTGTLT+N+M FKRCS+ G IYG++H   G K  MT ++ +V
Sbjct:  370 TPAQARTTTLNEELGQIEYVFSDKTGTLTENIMTFKRCSINGRIYGEVHDVLGQKTDMTKKKEAV 434
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A6J3QZD2_TURTR (Phospholipid-transporting ATPase n=21 Tax=Delphinidae TaxID=9726 RepID=A0A6J3QZD2_TURTR)

HSP 1 Score: 81.3 bits (199), Expect = 7.120e-16
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 TPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQ--GAKDLMTPQQLSV 192
            TPAQAR++ +  +LGQ+EYVFSDKTGTLT+N+M FKRCS+ G IYG++H   G K  MT ++ +V
Sbjct:  370 TPAQARTTTLNEELGQIEYVFSDKTGTLTENIMTFKRCSINGRIYGEVHDVLGQKTDMTKKKEAV 434
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BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Match: A0A0V0IGG0_SOLCH (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IGG0_SOLCH)

HSP 1 Score: 80.9 bits (198), Expect = 9.020e-16
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 DTPAQARSSNMAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYG----DIHQGAKDLMTPQQLSVRKGVRRRLENLSRSSRKMGF 252
            +TPAQAR+SN+  +LGQVEY+FSDKTGTLT+N+M+F +CS+GG IYG    +I  G          + R G R  ++N S  +R+ GF
Sbjct:  381 NTPAQARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGSGITEIEMGT---------AQRSGTRVEVQNSSNEAREKGF 459
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154465.3583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGJ4_ECTSI2.070e-2684.13Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A6H5JDV8_9PHAE4.830e-2283.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHZ9_9STRA2.990e-1966.67Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A7S2SIW9_9STRA6.590e-1862.69Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A7S2G4K0_9STRA2.670e-1775.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI00087091A92.780e-1664.52phospholipid-transporting ATPase IA-like n=1 Tax=G... [more]
A0A183N0M6_9TREM4.660e-1670.83Uncharacterized protein n=2 Tax=Schistosoma TaxID=... [more]
A0A6J3QYH1_TURTR7.080e-1658.46Phospholipid-transporting ATPase n=2 Tax=Delphinid... [more]
A0A6J3QZD2_TURTR7.120e-1658.46Phospholipid-transporting ATPase n=21 Tax=Delphini... [more]
A0A0V0IGG0_SOLCH9.020e-1648.86Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154465contigH-elongata_contig154465:526..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size258
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.0890248-UTR-H-elongata_contig154465:525..5551622929912.0890248-UTR-H-elongata_contig154465:525..555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154465 526..555 +
1691679205.6226304-UTR-H-elongata_contig154465:525..5551691679205.6226304-UTR-H-elongata_contig154465:525..555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154465 526..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.1071126-CDS-H-elongata_contig154465:555..8131622929912.1071126-CDS-H-elongata_contig154465:555..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154465 556..813 +
1691679205.636255-CDS-H-elongata_contig154465:555..8131691679205.636255-CDS-H-elongata_contig154465:555..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154465 556..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154465.3583.1prot_H-elongata_contig154465.3583.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154465 556..813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154465.3583.1

>prot_H-elongata_contig154465.3583.1 ID=prot_H-elongata_contig154465.3583.1|Name=mRNA_H-elongata_contig154465.3583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MAGDLGQVEYVFSDKTGTLTQNVMKFKRCSVGGSIYGDIHQGAKDLMTPQ
QLSVRKGVRRRLENLSRSSRKMGFRDKIAWRSSCT*
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mRNA from alignment at H-elongata_contig154465:526..813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154465.3583.1 ID=mRNA_H-elongata_contig154465.3583.1|Name=mRNA_H-elongata_contig154465.3583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig154465:526..813+ (Himanthalia elongata Himel1 dioecious)
GACACGCCTGCTCAAGCGCGATCGTCCAACATGGCTGGGGACCTCGGGCA
GGTGGAGTACGTGTTCAGCGACAAGACGGGCACCCTAACCCAAAACGTCA
TGAAGTTCAAGCGGTGCAGCGTCGGGGGCTCGATCTATGGAGATATTCAT
CAGGGTGCCAAAGACCTCATGACCCCGCAGCAGCTTTCGGTGAGGAAGGG
AGTGAGGAGAAGGCTCGAGAACCTCTCGAGATCCTCTCGCAAAATGGGTT
TCAGAGATAAAATAGCATGGAGATCAAGCTGTACTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig154465:526..813+

>mRNA_H-elongata_contig154465.3583.1 ID=mRNA_H-elongata_contig154465.3583.1|Name=mRNA_H-elongata_contig154465.3583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig154465:526..813+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGGGACCTCGGGCAGGTGGAGTACGTGTTCAGCGACAAGACGGG
CACCCTAACCCAAAACGTCATGAAGTTCAAGCGGTGCAGCGTCGGGGGCT
CGATCTATGGAGATATTCATCAGGGTGCCAAAGACCTCATGACCCCGCAG
CAGCTTTCGGTGAGGAAGGGAGTGAGGAGAAGGCTCGAGAACCTCTCGAG
ATCCTCTCGCAAAATGGGTTTCAGAGATAAAATAGCATGGAGATCAAGCT
GTACTTAAATGGCTGGGGACCTCGGGCAGGTGGAGTACGTGTTCAGCGAC
AAGACGGGCACCCTAACCCAAAACGTCATGAAGTTCAAGCGGTGCAGCGT
CGGGGGCTCGATCTATGGAGATATTCATCAGGGTGCCAAAGACCTCATGA
CCCCGCAGCAGCTTTCGGTGAGGAAGGGAGTGAGGAGAAGGCTCGAGAAC
CTCTCGAGATCCTCTCGCAAAATGGGTTTCAGAGATAAAATAGCATGGAG
ATCAAGCTGTACTTAA
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