mRNA_H-elongata_contig15443.3581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15443.3581.1
Unique NamemRNA_H-elongata_contig15443.3581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Match: D7FI85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI85_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.530e-54
Identity = 112/204 (54.90%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 MTHSRIVDTSLIYEGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQCTLDVARFALERRGAPLPQVARTKRNSRR------------SASRR----------TRDTKDEQNSSALLVHRLPRGTTAQQLLRVMQKKTRTAAVNAQPVVFNGTTGKSLVIYESIAQADKAFNTISSTAVEDASGRLQKKIFTSNDRKKHISV 546
            MTH R+VDTS ++EG D KFSTPSLKDVVK  LG+ IQ GSHDSVTDA+ TL+VAR+ALE+ GAPLP + RTK+ SRR               RR           R  K E+   +L+VHRLP GTT +QL+RVMQKKT+  A  A+ + F GTTGK+ V+Y +   AD AFN IS+ A ED SGRLQK+I+TS D KK+I+V
Sbjct:  712 MTHDRVVDTSFLFEGSDEKFSTPSLKDVVKVALGRHIQDGSHDSVTDAKSTLEVARYALEKVGAPLPPIDRTKKASRRWNGEGSSDDAGGRKKRRGLENGEDDADARAAKAEKERRSLMVHRLPAGTTPEQLMRVMQKKTKVIAQEAEGIEFTGTTGKTHVVYATKELADVAFNGISTAAKEDTSGRLQKRIYTSEDGKKYIAV 915
[Close]
BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Match: A0A836CAS9_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAS9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.570e-13
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 MTHSRIVDTSLIY--EGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQCTLDVARFALERRGAPLPQVARTKRNSR-RSASRRTRDTKDEQNSSALLVHRLPRGTTAQQLLRVMQKKTR 357
            M H R+VDTS ++  EGE    +TPSL+D+ K  L K+IQSGSH SVTDA   L+VA+FAL+R    LP + R     + ++A  R +          LLVHR+P G  A  L     K  R
Sbjct:  128 MVHERVVDTSFLFALEGEGPS-ATPSLRDLAKAVLDKEIQSGSHSSVTDAVTALEVAQFALDRGAEALPLIKRGCGGGKPKNAGMRAQ----------LLVHRIPLGIKAAHLTTAFTKLVR 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI85_ECTSI3.530e-5454.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAS9_9STRA1.570e-1342.62Ribonuclease H-like domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15443contigH-elongata_contig15443:4009..5629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D7FI85
KEGG koko:K14570
KEGG Pathwayko03008,map03008
EggNOG free text desc.exonuclease activity
EggNOG OGsCOG0847@1,KOG2248@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall RNA degrading nuclease
Ec32 orthologEc-23_003780.1
Exons3
Model size558
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15443.3581.1prot_H-elongata_contig15443.3581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15443 4009..5629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.9035375-CDS-H-elongata_contig15443:4008..41551622929911.9035375-CDS-H-elongata_contig15443:4008..4155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 4009..4155 +
1691679205.5690491-CDS-H-elongata_contig15443:4008..41551691679205.5690491-CDS-H-elongata_contig15443:4008..4155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 4009..4155 +
1622929911.9468358-CDS-H-elongata_contig15443:4879..51461622929911.9468358-CDS-H-elongata_contig15443:4879..5146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 4880..5146 +
1691679205.5776134-CDS-H-elongata_contig15443:4879..51461691679205.5776134-CDS-H-elongata_contig15443:4879..5146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 4880..5146 +
1622929911.976282-CDS-H-elongata_contig15443:5485..56291622929911.976282-CDS-H-elongata_contig15443:5485..5629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 5486..5629 +
1691679205.5850077-CDS-H-elongata_contig15443:5485..56291691679205.5850077-CDS-H-elongata_contig15443:5485..5629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15443 5486..5629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15443.3581.1

>prot_H-elongata_contig15443.3581.1 ID=prot_H-elongata_contig15443.3581.1|Name=mRNA_H-elongata_contig15443.3581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MTHSRIVDTSLIYEGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQC
TLDVARFALERRGAPLPQVARTKRNSRRSASRRTRDTKDEQNSSALLVHR
LPRGTTAQQLLRVMQKKTRTAAVNAQPVVFNGTTGKSLVIYESIAQADKA
FNTISSTAVEDASGRLQKKIFTSNDRKKHISVTTR*
back to top

mRNA from alignment at H-elongata_contig15443:4009..5629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15443.3581.1 ID=mRNA_H-elongata_contig15443.3581.1|Name=mRNA_H-elongata_contig15443.3581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1621bp|location=Sequence derived from alignment at H-elongata_contig15443:4009..5629+ (Himanthalia elongata Himel1 dioecious)
ATGACGCACTCCAGAATCGTGGATACGTCGCTGATCTACGAGGGTGAGGA
TATGAAGTTTAGCACACCCAGCCTCAAAGACGTCGTCAAGACCACCCTCG
GGAAAGACATCCAAAGTGGCTCGCACGACTCCGTCACTGATGCGCAGGTG
AAATACGCCGCCGTTGAACGCGGAAACCTGAGGACTCCAGGGGGGGGAGG
AAGTGTAGATGGGGGGATCTTTAGTCTAGATTAAACTCGACATACACGTC
ATCGTTGCTATAATTTTTGCCTTAGGAGCATTGTGATCATGTCATATCCA
AGAGCTCGGAAAGAAATCGACTCATCGACTTCGGCTTCACTCGTTGCGTC
TTTTTTTCCCTTCAGGCCATCCCGTGGCTCCAAGTGTTGATTGATTAAGG
AGGCATTTGTCTGTGGATTTTGTCGAAGCTGTTTGTGAGCTTAATATCAA
AATGAATTTTTCGGTGTCTACTAAAAGTCTCACAAGCAGGCGGCGGAATC
TAGTAAATAGTGTCATTTTTTCCCCGTCTGCGTGATCCAACCGCGTCAAA
CGCCGAATAATGCCGAAGGCCTCTGGCCTAGCTCAGCATATCGAACGATA
TGGACCTTCACTCAGTTGCAAGCTTGTGGGTCTCAAGAATACCGAAAGGT
GTTTGAGGTTCAACCTGCGGTAAAAATGCTGCCCTTGCCCTCGTACTTAC
GCATTACCCTACTCTCTCTTTTATTTTTCGCTCCTCTCCCGGCGTGGCAT
TTTATTGTCTTCAATTCCAGCGGTCCTTTTGACCACAAGTTCCTCCTCCC
CCCTCGCTGTTCCTCGTCCCCTGCCCCCGTTTCCCCTTTTTCATACCGGT
ACGTTGCAAACATTCTGCCAGTGTACCCTGGACGTGGCCAGGTTTGCCCT
GGAGAGGCGCGGGGCTCCGCTTCCGCAAGTGGCTCGCACGAAGAGGAACT
CCCGTCGAAGCGCATCGCGAAGGACGCGGGACACAAAGGACGAGCAGAAT
TCGAGTGCGCTACTGGTGCATCGCCTGCCAAGGGGTACAACCGCGCAACA
GCTGCTGCGAGTGATGCAGAAGAAGACGCGCACCGCGGCCGTCAATGCAC
AGCCGGTCGTGTTCAATGGCACGACCGGAAAGAGCCTTGTGAGGGAGTGA
GATGTTTTCATGTCTACTGCAATGTCGAATATCTGAAGCAGAGATTGCGC
GAAGGCGCGCTCCACCCATCCACCCGCGCCCGCGCGTTTTGCAGCCACCA
AACACCACAACGTCTGAGAAGAGGCGTAAGACTCGCGTTCTTAAAAGATG
CATGTGTGGGTGTGGAGGACGGTGGAGATATTCCGACCCTCTCCTGCCCC
CTATCGCCTCTGAACAATATGTTTCGAACCCCCCATCCGGTCGGTTGTTA
TGAGGCGGCTCTCGGTTGTCACCACCCGGAACGCTTTTCCTCCTTGCGGT
GTTCCGCGTGCCGTCGATTAACTGCAGGTGATCTACGAGTCCATAGCCCA
GGCGGATAAGGCGTTTAACACCATCTCTAGCACCGCTGTAGAAGACGCAT
CCGGGCGCTTGCAAAAGAAGATCTTCACGTCCAACGACCGCAAGAAGCAC
ATCTCGGTGACCACACGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15443:4009..5629+

>mRNA_H-elongata_contig15443.3581.1 ID=mRNA_H-elongata_contig15443.3581.1|Name=mRNA_H-elongata_contig15443.3581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig15443:4009..5629+ (Himanthalia elongata Himel1 dioecious)
ATGACGCACTCCAGAATCGTGGATACGTCGCTGATCTACGAGGGTGAGGA
TATGAAGTTTAGCACACCCAGCCTCAAAGACGTCGTCAAGACCACCCTCG
GGAAAGACATCCAAAGTGGCTCGCACGACTCCGTCACTGATGCGCAGATG
ACGCACTCCAGAATCGTGGATACGTCGCTGATCTACGAGGGTGAGGATAT
GAAGTTTAGCACACCCAGCCTCAAAGACGTCGTCAAGACCACCCTCGGGA
AAGACATCCAAAGTGGCTCGCACGACTCCGTCACTGATGCGCAGTGTACC
CTGGACGTGGCCAGGTTTGCCCTGGAGAGGCGCGGGGCTCCGCTTCCGCA
AGTGGCTCGCACGAAGAGGAACTCCCGTCGAAGCGCATCGCGAAGGACGC
GGGACACAAAGGACGAGCAGAATTCGAGTGCGCTACTGGTGCATCGCCTG
CCAAGGGGTACAACCGCGCAACAGCTGCTGCGAGTGATGCAGAAGAAGAC
GCGCACCGCGGCCGTCAATGCACAGCCGGTCGTGTTCAATGGCACGACCG
GAAAGAGCCTTTGTACCCTGGACGTGGCCAGGTTTGCCCTGGAGAGGCGC
GGGGCTCCGCTTCCGCAAGTGGCTCGCACGAAGAGGAACTCCCGTCGAAG
CGCATCGCGAAGGACGCGGGACACAAAGGACGAGCAGAATTCGAGTGCGC
TACTGGTGCATCGCCTGCCAAGGGGTACAACCGCGCAACAGCTGCTGCGA
GTGATGCAGAAGAAGACGCGCACCGCGGCCGTCAATGCACAGCCGGTCGT
GTTCAATGGCACGACCGGAAAGAGCCTTGTGATCTACGAGTCCATAGCCC
AGGCGGATAAGGCGTTTAACACCATCTCTAGCACCGCTGTAGAAGACGCA
TCCGGGCGCTTGCAAAAGAAGATCTTCACGTCCAACGACCGCAAGAAGCA
CATCTCGGTGACCACACGTTGAGTGATCTACGAGTCCATAGCCCAGGCGG
ATAAGGCGTTTAACACCATCTCTAGCACCGCTGTAGAAGACGCATCCGGG
CGCTTGCAAAAGAAGATCTTCACGTCCAACGACCGCAAGAAGCACATCTC
GGTGACCACACGTTGA
back to top