mRNA_H-elongata_contig154414.3579.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 124 bits (310), Expect = 4.650e-31 Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTE--EATKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFV 492
+ECIS RL+K R+ I C VTFVV Y PTE T G K + AL++ + + +R+++ +L + GG ++KVLGAYG+D++N NG+ L + DN+ +L NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+V+ + V SDHN V
Sbjct: 72 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLV 243
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.240e-30 Identity = 72/176 (40.91%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTEEA--TKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFVYA 498
+ECIS RL+K R+ I C VTFVV Y PTE A T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L+NTYF TPK +T QS+N GK + R+D+I+++Q DRRLVR+ + + V SDHN V+
Sbjct: 72 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVRNASVKRVDF--KDSDHNLVHT 245
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.250e-30 Identity = 72/176 (40.91%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTEEA--TKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFVYA 498
+ECIS RL+K R+ I C VTFVV Y PTE A T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L+NTYF TPK +T QS+N GK + R+D+I+++Q DRRLVR+ + + V SDHN V+
Sbjct: 184 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVRNASVKRVDF--KDSDHNLVHT 357
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE) HSP 1 Score: 125 bits (314), Expect = 2.590e-30 Identity = 71/176 (40.34%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTEEA--TKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFVYA 498
+ECIS RL+K R+ I C VTFVV Y PTE A T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L+NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+V+ + V +DHN V+
Sbjct: 12 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKSVAF--KDADHNLVHT 185
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 8.060e-30 Identity = 71/176 (40.34%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTEEA--TKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFVYA 498
+ECIS RL+K R+ I C VTFVV Y PTE A T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L+NTYF TPK +T QS+N GK + R+D+I+++Q DRRL R+ + + V SDHN V+
Sbjct: 305 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLERNASVKRVDF--KDSDHNLVHT 478
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 122 bits (307), Expect = 8.160e-30 Identity = 71/174 (40.80%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTE--EATKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFV 492
+ECIS RL+K R+ I C VTFV+ Y PTE T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L NTYF TPK A +T QS+N GK + R+D+I+++Q DRR VR V+ + V SDHN V
Sbjct: 72 VECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKEKYRLDFILMRQTDRRFVRDVSVKRVDF--KDSDHNLV 243
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.940e-29 Identity = 71/174 (40.80%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTE--EATKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFV 492
+ECIS RL+K R+ I C VTFVV Y PTE T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+V+ + V SDHN V
Sbjct: 72 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDF--KDSDHNLV 243
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5K358_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K358_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.620e-29 Identity = 69/174 (39.66%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTEEATK------GEKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFV 492
+ECIS RL+K R+ I C VTFVV Y PTE K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+V+ + V SDHN V
Sbjct: 167 VECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTACGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLV 338
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.720e-29 Identity = 71/174 (40.80%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTE--EATKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHNFV 492
+ECIS RL+K R+ I C VTFVV Y PTE T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+V+ + V SDHN V
Sbjct: 751 VECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLV 922
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Match: A0A6H5JQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ12_9PHAE) HSP 1 Score: 118 bits (295), Expect = 4.930e-29 Identity = 67/172 (38.95%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 16 IECISARLLKARISIKSKC-VTFVVAYTPTE--EATKG----EKAKYIAALNSTVSSLPTREYVFIL--------GKGGGDAESKVLGAYGQDVLNQNGKLLLSFSEDNKLALLNTYFSTPKNDASYTSQSANHGKGQGRMDYIIIKQVDRRLVRSVNFRPVPLGGPKSDHN 486
+ECIS R++K R+ I C V FVV Y PTE T G K + AL++ + + +R+++ +L + G ++K++GAYG+D++N NG+ LL + DN+L+L NTYF TPK +T QS+N GK + R+D+I+++Q DRR VR+++ + V SDHN
Sbjct: 12 VECISPRMMKVRLQIGRTCGVNFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNISVKRVDF--KDSDHN 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154414.3579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154414.3579.1 >prot_H-elongata_contig154414.3579.1 ID=prot_H-elongata_contig154414.3579.1|Name=mRNA_H-elongata_contig154414.3579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp KDDIAIECISARLLKARISIKSKCVTFVVAYTPTEEATKGEKAKYIAALNback to top mRNA from alignment at H-elongata_contig154414:228..728+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154414.3579.1 ID=mRNA_H-elongata_contig154414.3579.1|Name=mRNA_H-elongata_contig154414.3579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig154414:228..728+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154414:228..728+ >mRNA_H-elongata_contig154414.3579.1 ID=mRNA_H-elongata_contig154414.3579.1|Name=mRNA_H-elongata_contig154414.3579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig154414:228..728+ (Himanthalia elongata Himel1 dioecious)back to top |