mRNA_H-elongata_contig154177.3571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154177.3571.1
Unique NamemRNA_H-elongata_contig154177.3571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154177.3571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154177contigH-elongata_contig154177:427..794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.0051544-UTR-H-elongata_contig154177:426..4371622929911.0051544-UTR-H-elongata_contig154177:426..437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154177 427..437 +
1691679205.245468-UTR-H-elongata_contig154177:426..4371691679205.245468-UTR-H-elongata_contig154177:426..437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154177 427..437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.021823-CDS-H-elongata_contig154177:437..7941622929911.021823-CDS-H-elongata_contig154177:437..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154177 438..794 +
1691679205.2544718-CDS-H-elongata_contig154177:437..7941691679205.2544718-CDS-H-elongata_contig154177:437..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154177 438..794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154177.3571.1prot_H-elongata_contig154177.3571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154177 438..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154177.3571.1

>prot_H-elongata_contig154177.3571.1 ID=prot_H-elongata_contig154177.3571.1|Name=mRNA_H-elongata_contig154177.3571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MSELGAAGATMEGVGIKGGGTSFTNAAAFREGSEGIEARVNAATVSNATA
LVTAVAMMAVPQATRFHQTIGNRTEASTELGTEGGPEYQPVKSSLILSYR
APMVYVLVVAKLSKIGEN*
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mRNA from alignment at H-elongata_contig154177:427..794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154177.3571.1 ID=mRNA_H-elongata_contig154177.3571.1|Name=mRNA_H-elongata_contig154177.3571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=368bp|location=Sequence derived from alignment at H-elongata_contig154177:427..794+ (Himanthalia elongata Himel1 dioecious)
CAGTGACGACGATGTCGGAGCTGGGGGCCGCTGGCGCGACAATGGAGGGT
GTAGGAATTAAGGGGGGGGGTACGTCGTTCACCAACGCCGCAGCGTTTAG
GGAGGGTTCAGAAGGGATCGAGGCGCGAGTAAACGCCGCCACAGTGTCGA
ATGCGACGGCGCTGGTAACGGCAGTAGCGATGATGGCCGTCCCGCAAGCG
ACGAGATTCCACCAGACGATCGGAAACAGGACAGAGGCCTCAACCGAGCT
GGGGACAGAGGGCGGTCCAGAATACCAGCCTGTAAAATCGTCACTAATAC
TAAGCTACCGCGCCCCTATGGTTTACGTATTAGTAGTAGCTAAGCTTTCG
AAGATCGGTGAAAACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig154177:427..794+

>mRNA_H-elongata_contig154177.3571.1 ID=mRNA_H-elongata_contig154177.3571.1|Name=mRNA_H-elongata_contig154177.3571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig154177:427..794+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGCTGGGGGCCGCTGGCGCGACAATGGAGGGTGTAGGAATTAA
GGGGGGGGGTACGTCGTTCACCAACGCCGCAGCGTTTAGGGAGGGTTCAG
AAGGGATCGAGGCGCGAGTAAACGCCGCCACAGTGTCGAATGCGACGGCG
CTGGTAACGGCAGTAGCGATGATGGCCGTCCCGCAAGCGACGAGATTCCA
CCAGACGATCGGAAACAGGACAGAGGCCTCAACCGAGCTGGGGACAGAGG
GCGGTCCAGAATACCAGCCTGTAAAATCGTCACTAATACTAAGCTACCGC
GCCCCTATGGTTTACGTATTAGTAGTAGCTAAGCTTTCGAAGATCGGTGA
AAACTGAATGTCGGAGCTGGGGGCCGCTGGCGCGACAATGGAGGGTGTAG
GAATTAAGGGGGGGGGTACGTCGTTCACCAACGCCGCAGCGTTTAGGGAG
GGTTCAGAAGGGATCGAGGCGCGAGTAAACGCCGCCACAGTGTCGAATGC
GACGGCGCTGGTAACGGCAGTAGCGATGATGGCCGTCCCGCAAGCGACGA
GATTCCACCAGACGATCGGAAACAGGACAGAGGCCTCAACCGAGCTGGGG
ACAGAGGGCGGTCCAGAATACCAGCCTGTAAAATCGTCACTAATACTAAG
CTACCGCGCCCCTATGGTTTACGTATTAGTAGTAGCTAAGCTTTCGAAGA
TCGGTGAAAACTGA
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