mRNA_H-elongata_contig154035.3562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154035.3562.1
Unique NamemRNA_H-elongata_contig154035.3562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.760e-12
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:   13 MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAMTVLWARSSATTRRHDKGYYRQL--NINDPSDATSSSAQEGGYEESKSSY 303
            MG LDGLCD  DGEAE SW  FW ++N+C++TTLGAVV  LVA ++ VAM V +  SS+       GY  +L  ++ND           GG EE+K S+
Sbjct:    1 MGFLDGLCDSPDGEAEFSWHDFWLLDNVCSLTTLGAVVAGLVALMSFVAMLVQYGCSSSGGGCRATGYANKLWNSVNDG----------GGREETKGSH 89
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BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.110e-12
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   13 MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAMTVLWARSSA 189
            MG LDGLCD  DGEA+ SW  FWR++N+C++TTLGAVV  LVA L+ VAM V +  SS+
Sbjct:    1 MGFLDGLCDSPDGEAKFSWHDFWRLDNVCSLTTLGAVVAGLVALLSFVAMLVHYGCSSS 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ25_9PHAE1.760e-1246.46ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0B6_ECTSI6.110e-1261.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154035contigH-elongata_contig154035:532..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7G0B6
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size422
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.2640228-UTR-H-elongata_contig154035:531..5431622929910.2640228-UTR-H-elongata_contig154035:531..543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154035 532..543 +
1691679205.055612-UTR-H-elongata_contig154035:531..5431691679205.055612-UTR-H-elongata_contig154035:531..543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154035 532..543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.281187-CDS-H-elongata_contig154035:543..9511622929910.281187-CDS-H-elongata_contig154035:543..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154035 544..951 +
1691679205.0654645-CDS-H-elongata_contig154035:543..9511691679205.0654645-CDS-H-elongata_contig154035:543..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154035 544..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154035.3562.1prot_H-elongata_contig154035.3562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154035 544..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154035.3562.1

>prot_H-elongata_contig154035.3562.1 ID=prot_H-elongata_contig154035.3562.1|Name=mRNA_H-elongata_contig154035.3562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAM
TVLWARSSATTRRHDKGYYRQLNINDPSDATSSSAQEGGYEESKSSYSHQ
DGNGFAANASEPLLGNRRTSSNGGFVNSTDLPMETG
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mRNA from alignment at H-elongata_contig154035:532..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154035.3562.1 ID=mRNA_H-elongata_contig154035.3562.1|Name=mRNA_H-elongata_contig154035.3562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig154035:532..951+ (Himanthalia elongata Himel1 dioecious)
GCGAGAAAGGCGATGGGAATTCTGGACGGCCTCTGCGACTACGACGATGG
CGAGGCCGAAGTTTCGTGGACCTCCTTCTGGAGGATCGAAAACCTTTGTG
CCGTGACCACGCTCGGCGCCGTGGTGCCCCTCCTCGTGGCCGGCTTAACG
TGCGTAGCCATGACCGTTCTTTGGGCACGTTCCTCAGCAACCACAAGACG
CCACGATAAGGGCTACTACCGACAGCTCAACATCAACGACCCTTCAGACG
CCACGTCGTCTTCCGCCCAAGAAGGTGGATACGAAGAGTCGAAATCTTCA
TATTCCCACCAGGATGGCAACGGCTTCGCGGCGAACGCATCCGAGCCACT
GCTTGGCAATCGCCGCACCTCATCCAACGGAGGCTTCGTAAATTCAACTG
ATTTACCAATGGAGACGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig154035:532..951+

>mRNA_H-elongata_contig154035.3562.1 ID=mRNA_H-elongata_contig154035.3562.1|Name=mRNA_H-elongata_contig154035.3562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig154035:532..951+ (Himanthalia elongata Himel1 dioecious)
ATGGGAATTCTGGACGGCCTCTGCGACTACGACGATGGCGAGGCCGAAGT
TTCGTGGACCTCCTTCTGGAGGATCGAAAACCTTTGTGCCGTGACCACGC
TCGGCGCCGTGGTGCCCCTCCTCGTGGCCGGCTTAACGTGCGTAGCCATG
ACCGTTCTTTGGGCACGTTCCTCAGCAACCACAAGACGCCACGATAAGGG
CTACTACCGACAGCTCAACATCAACGACCCTTCAGACGCCACGTCGTCTT
CCGCCCAAGAAGGTGGATACGAAGAGTCGAAATCTTCATATTCCCACCAG
GATGGCAACGGCTTCGCGGCGAACGCATCCGAGCCACTGCTTGGCAATCG
CCGCACCTCATCCAACGGAGGCTTCGTAAATTCAACTGATTTACCAATGG
AGACGGGGATGGGAATTCTGGACGGCCTCTGCGACTACGACGATGGCGAG
GCCGAAGTTTCGTGGACCTCCTTCTGGAGGATCGAAAACCTTTGTGCCGT
GACCACGCTCGGCGCCGTGGTGCCCCTCCTCGTGGCCGGCTTAACGTGCG
TAGCCATGACCGTTCTTTGGGCACGTTCCTCAGCAACCACAAGACGCCAC
GATAAGGGCTACTACCGACAGCTCAACATCAACGACCCTTCAGACGCCAC
GTCGTCTTCCGCCCAAGAAGGTGGATACGAAGAGTCGAAATCTTCATATT
CCCACCAGGATGGCAACGGCTTCGCGGCGAACGCATCCGAGCCACTGCTT
GGCAATCGCCGCACCTCATCCAACGGAGGCTTCGTAAATTCAACTGATTT
ACCAATGGAGACGGGG
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