prot_H-elongata_contig153685.3542.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig153685.3542.1
Unique Nameprot_H-elongata_contig153685.3542.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: D8LJ53_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ53_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.150e-26
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA 58
            VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA
Sbjct:   24 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA 73          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4V9X7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9X7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.970e-19
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   51 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGPSY 99          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A835YM50_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM50_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-19
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    8 QVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDA 56
            +VVGNEQT++RLKVIA+EGN+PN+II GPPGTGKTTS+HALA TML DA
Sbjct:   23 EVVGNEQTIERLKVIAQEGNLPNIIISGPPGTGKTTSIHALARTMLKDA 71          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A448YVS4_9STRA (AAA domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YVS4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-18
Identity = 37/49 (75.51%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE+TL RL+ IA++GN+PN+I+CGPPGTGKTTSVHALAH +LGD+Y
Sbjct:   34 VVGNEETLVRLQAIAKDGNLPNLILCGPPGTGKTTSVHALAHELLGDSY 82          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4QJD3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJD3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.200e-18
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   51 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGPSY 99          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: B8LC61_THAPS (Replication factor C 37 KD subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC61_THAPS)

HSP 1 Score: 84.0 bits (206), Expect = 7.790e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG AY
Sbjct:   32 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 80          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: K0T3D3_THAOC (AAA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3D3_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 7.930e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG AY
Sbjct:   28 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 76          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4MNB7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNB7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   45 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSSY 93          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S2I8X7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8X7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.250e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   43 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSSY 91          
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S2KT17_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KT17_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    9 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 57
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKT+SVHALA  +LG AY
Sbjct:   26 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTSSVHALARQLLGSAY 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ53_ECTSI8.150e-26100.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4V9X7_9STRA2.970e-1975.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835YM50_9STRA8.150e-1979.59P-loop containing nucleoside triphosphate hydrolas... [more]
A0A448YVS4_9STRA1.590e-1875.51AAA domain-containing protein n=2 Tax=Pseudo-nitzs... [more]
A0A7S4QJD3_9STRA7.200e-1875.51Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
B8LC61_THAPS7.790e-1877.55Replication factor C 37 KD subunit n=1 Tax=Thalass... [more]
K0T3D3_THAOC7.930e-1877.55AAA domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S4MNB7_9STRA1.200e-1775.51Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2I8X7_9STRA1.250e-1775.51Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2KT17_9STRA2.770e-1775.51Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 31..52
e-value: 6.1E-5
score: 23.5
NoneNo IPR availableGENE3D3.40.50.300coord: 4..58
e-value: 4.7E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR11669:SF5REPLICATION FACTOR C SUBUNIT 2coord: 8..57
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 8..57
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153685contigH-elongata_contig153685:89..262 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153685.3542.1mRNA_H-elongata_contig153685.3542.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig153685 89..262 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig153685.3542.1 ID=prot_H-elongata_contig153685.3542.1|Name=mRNA_H-elongata_contig153685.3542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
LIVSDACQVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAH
TMLGDAYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase