mRNA_H-elongata_contig153685.3542.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153685.3542.1
Unique NamemRNA_H-elongata_contig153685.3542.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: D8LJ53_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ53_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.150e-26
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA 174
            VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA
Sbjct:   24 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYA 73
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4V9X7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9X7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.970e-19
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   51 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGPSY 99
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A835YM50_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM50_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-19
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   22 QVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDA 168
            +VVGNEQT++RLKVIA+EGN+PN+II GPPGTGKTTS+HALA TML DA
Sbjct:   23 EVVGNEQTIERLKVIAQEGNLPNIIISGPPGTGKTTSIHALARTMLKDA 71
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A448YVS4_9STRA (AAA domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YVS4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-18
Identity = 37/49 (75.51%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE+TL RL+ IA++GN+PN+I+CGPPGTGKTTSVHALAH +LGD+Y
Sbjct:   34 VVGNEETLVRLQAIAKDGNLPNLILCGPPGTGKTTSVHALAHELLGDSY 82
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4QJD3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJD3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.200e-18
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   51 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGPSY 99
[Close]
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: B8LC61_THAPS (Replication factor C 37 KD subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC61_THAPS)

HSP 1 Score: 84.0 bits (206), Expect = 7.790e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG AY
Sbjct:   32 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 80
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: K0T3D3_THAOC (AAA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3D3_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 7.930e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG AY
Sbjct:   28 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 76
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BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S4MNB7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNB7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   45 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSSY 93
[Close]
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S2I8X7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8X7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.250e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE+TL RL+ IAE+GNMPN+I+CGPPGTGKTTSVHALA  +LG +Y
Sbjct:   43 VVGNEETLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSSY 91
[Close]
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Match: A0A7S2KT17_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KT17_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 VVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 171
            VVGNE TL RL+ IAE+GNMPN+I+CGPPGTGKT+SVHALA  +LG AY
Sbjct:   26 VVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTSSVHALARQLLGSAY 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153685.3542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ53_ECTSI8.150e-26100.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4V9X7_9STRA2.970e-1975.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835YM50_9STRA8.150e-1979.59P-loop containing nucleoside triphosphate hydrolas... [more]
A0A448YVS4_9STRA1.590e-1875.51AAA domain-containing protein n=2 Tax=Pseudo-nitzs... [more]
A0A7S4QJD3_9STRA7.200e-1875.51Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
B8LC61_THAPS7.790e-1877.55Replication factor C 37 KD subunit n=1 Tax=Thalass... [more]
K0T3D3_THAOC7.930e-1877.55AAA domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S4MNB7_9STRA1.200e-1775.51Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2I8X7_9STRA1.250e-1775.51Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2KT17_9STRA2.770e-1775.51Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153685contigH-elongata_contig153685:89..262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog2880.D8LJ53
Preferred nameRFC2
KEGG rclassRC00004,RC00064
KEGG koko:K00620,ko:K10755
KEGG ReactionR00259,R02282
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,ko03030,ko03420,ko03430,map00220,map01100,map01110,map01130,map01210,map01230,map03030,map03420,map03430
KEGG ModuleM00028,M00289,M00295
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030554,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0097367,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0991@2759
EC2.3.1.1,2.3.1.35
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.6531086-CDS-H-elongata_contig153685:88..2621622929908.6531086-CDS-H-elongata_contig153685:88..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153685 89..262 -
1691679204.1311388-CDS-H-elongata_contig153685:88..2621691679204.1311388-CDS-H-elongata_contig153685:88..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153685 89..262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153685.3542.1prot_H-elongata_contig153685.3542.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153685 89..262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153685.3542.1

>prot_H-elongata_contig153685.3542.1 ID=prot_H-elongata_contig153685.3542.1|Name=mRNA_H-elongata_contig153685.3542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
LIVSDACQVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAH
TMLGDAYA
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mRNA from alignment at H-elongata_contig153685:89..262-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153685.3542.1 ID=mRNA_H-elongata_contig153685.3542.1|Name=mRNA_H-elongata_contig153685.3542.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig153685:89..262- (Himanthalia elongata Himel1 dioecious)
CTTATCGTATCGGACGCATGCCAGGTGGTGGGTAACGAGCAGACACTGGA
CCGTCTGAAAGTGATCGCCGAAGAAGGAAACATGCCAAACGTCATCATCT
GCGGCCCGCCGGGCACGGGCAAGACTACCAGCGTGCACGCCCTCGCGCAC
ACAATGCTCGGGGACGCCTACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig153685:89..262-

>mRNA_H-elongata_contig153685.3542.1 ID=mRNA_H-elongata_contig153685.3542.1|Name=mRNA_H-elongata_contig153685.3542.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig153685:89..262- (Himanthalia elongata Himel1 dioecious)
CTTATCGTATCGGACGCATGCCAGGTGGTGGGTAACGAGCAGACACTGGA
CCGTCTGAAAGTGATCGCCGAAGAAGGAAACATGCCAAACGTCATCATCT
GCGGCCCGCCGGGCACGGGCAAGACTACCAGCGTGCACGCCCTCGCGCAC
ACAATGCTCGGGGACGCCTACGCGCTTATCGTATCGGACGCATGCCAGGT
GGTGGGTAACGAGCAGACACTGGACCGTCTGAAAGTGATCGCCGAAGAAG
GAAACATGCCAAACGTCATCATCTGCGGCCCGCCGGGCACGGGCAAGACT
ACCAGCGTGCACGCCCTCGCGCACACAATGCTCGGGGACGCCTACGCG
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